Non-Coding RNA Search

Ss1.1-Pig4-TMW8030C24.3

Sequence:


               
               ACAAGAGCATGCCAAACCTGGGAGCCGGCCATCAGCTGCAGATGTGCTACCAGATCAGCA
GGGGCAATAGCGACGGGTACATCCTCCCCATCAACAAGGAAGGGTGCATCCCCGAAGGAG
ACGTCAGAGAAGGGCAGATGCAGCTGGTGACAAGTCTTTAACAGCAGCGCAGCTGAGGAA
GGCCGGGGACCACACGCAGGGGTCGGTAAACAAAGACAGGCTTCGCCGACCCACCACAGC
TCCCTCCGCCTCCACTTGACGAGATGCCTCTGTTGACCTGTGGTTCTCCCGTGTACAAAA
GATGACTGAACCTTGCCGTTCTGTGAATTTTTATAAACCATGCAAAAACTTTGTACATAC
ACAGAGTATACTAAGATGAATTATTTGTTACAAAGAAAAGAGATGCCAACCAGGTATTTT
AGGATTCTGCTGCTGTTTAGAGAAAATTGTGAACCAAGCAAAACGAAACTTTCCAGCCAT
TTTACTGCAGCAGTTTGTGAACTCGATTTGTAAATATGGCTGCACCATTTTTGTAGGCCT
GCATTGTATTATATACAAGACGTAGGCTTTAAAATCCTGTGGGACAAATTTACTGTACCT
TACTGTTCCTGACAAGACTTGGAAAAGCAGGAGAGATATTCTGCATCCGTTTGCAGTTTA
CTGCAAACCTTTTACATTAAGGCAAAGATTGAAAACATGTAACCACTAGCAATCAAGCCA
CAGGCCTTATTTCATATGTTTCCTCAACTGTACAATGAACTATTCAAAAATGGCTAAAGA
AATTATATTTTGTTCTATTGCTAGGGTAAAATAAATACATTTGTGTCCAACTGAAATATA
ATTGTCATTAAAATAATTTTAAAGAGTTTGAAGAAAATATTGTGAAAAGCTCTTGGTTGC
ACATATGTTATGAAATGTTTTTTCTTACACTTTGTCATGGTAAGTTCTACCCATTTTCAC
TTATTTTCCACTGTATGCAGTGTTCTGCTTTGACAAGTTAGTCCTTATTCTTACATTTAA
ATTTCTTATTGCCAAAAGAACGTGTTTTATGGGGAAAAAACTCTTTGAAGCCAGTTACGC
CATGCCTTGCACAAATGTGGTGAAATCTAGAAACGATTGGGTGTGACCTTCTGTTTGTTC
TTGAACAGGGGGCCAAGAGGGCACTGGGCACTTCTCACAAACTTTCTCGTGAACAAAAGG
TGCCTATTCTTTTTTAAAAAATAAAATAAAACATAAATATTACTCCTCCATATTCCTTCT
GCCTATATTTAGTAATTAATTTATTTTATGATAAAGTTCTAATGAAGTGTAAATTGTTTC
AGCAAAGTTCTGCTTTTCTCTTCATCCCTTTGTGTAAACCTGTTAATAATGAGCCCATCA
CTAATATTCAGTGTAAAGTTTAACACGGTTTGACAGTAAATAAATGTGAATTTTTTCAAG
TAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAAGAGCATGCCAAACCTGGGAGCCGGCCATCAGCTGCAGATGTGCTACCAGATCAGCA
GGGGCAATAGCGACGGGTACATCCTCCCCATCAACAAGGAAGGGTGCATCCCCGAAGGAG
ACGTCAGAGAAGGGCAGATGCAGCTGGTGACAAGTCTTTAACAGCAGCGCAGCTGAGGAA
GGCCGGGGACCACACGCAGGGGTCGGTAAACAAAGACAGGCTTCGCCGACCCACCACAGC
TCCCTCCGCCTCCACTTGACGAGATGCCTCTGTTGACCTGTGGTTCTCCCGTGTACAAAA
GATGACTGAACCTTGCCGTTCTGTGAATTTTTATAAACCATGCAAAAACTTTGTACATAC
ACAGAGTATACTAAGATGAATTATTTGTTACAAAGAAAAGAGATGCCAACCAGGTATTTT
AGGATTCTGCTGCTGTTTAGAGAAAATTGTGAACCAAGCAAAACGAAACTTTCCAGCCAT
TTTACTGCAGCAGTTTGTGAACTCGATTTGTAAATATGGCTGCACCATTTTTGTAGGCCT
GCATTGTATTATATACAAGACGTAGGCTTTAAAATCCTGTGGGACAAATTTACTGTACCT
TACTGTTCCTGACAAGACTTGGAAAAGCAGGAGAGATATTCTGCATCCGTTTGCAGTTTA
CTGCAAACCTTTTACATTAAGGCAAAGATTGAAAACATGTAACCACTAGCAATCAAGCCA
CAGGCCTTATTTCATATGTTTCCTCAACTGTACAATGAACTATTCAAAAATGGCTAAAGA
AATTATATTTTGTTCTATTGCTAGGGTAAAATAAATACATTTGTGTCCAACTGAAATATA
ATTGTCATTAAAATAATTTTAAAGAGTTTGAAGAAAATATTGTGAAAAGCTCTTGGTTGC
ACATATGTTATGAAATGTTTTTTCTTACACTTTGTCATGGTAAGTTCTACCCATTTTCAC
TTATTTTCCACTGTATGCAGTGTTCTGCTTTGACAAGTTAGTCCTTATTCTTACATTTAA
ATTTCTTATTGCCAAAAGAACGTGTTTTATGGGGAAAAAACTCTTTGAAGCCAGTTACGC
CATGCCTTGCACAAATGTGGTGAAATCTAGAAACGATTGGGTGTGACCTTCTGTTTGTTC
TTGAACAGGGGGCCAAGAGGGCACTGGGCACTTCTCACAAACTTTCTCGTGAACAAAAGG
TGCCTATTCTTTTTTAAAAAATAAAATAAAACATAAATATTACTCCTCCATATTCCTTCT
GCCTATATTTAGTAATTAATTTATTTTATGATAAAGTTCTAATGAAGTGTAAATTGTTTC
AGCAAAGTTCTGCTTTTCTCTTCATCCCTTTGTGTAAACCTGTTAATAATGAGCCCATCA
CTAATATTCAGTGTAAAGTTTAACACGGTTTGACAGTAAATAAATGTGAATTTTTTCAAG
TAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               469-760, - strand, RNAz p=0.98772
               

               
               1105-1252, + strand, RNAz p=0.985341

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               469-760, - strand, RNAz p=0.98772
               

               
               1105-1252, + strand, RNAz p=0.985341

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AF104938, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AF104938, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-1442, gnl|bosTau2|chr3 (47546826-47545383)
               

               
               3-1442, gnl|Hg17|chr1 (82168692-82170128)
               

               
               3-1442, gnl|Mm7|chr3 (148717616-148716139)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-1442, gnl|bosTau2|chr3 (47546826-47545383)
               

               
               3-1442, gnl|Hg17|chr1 (82168692-82170128)
               

               
               3-1442, gnl|Mm7|chr3 (148717616-148716139)

Expressed library(ies): 22 entry(ies)

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Expressed library(ies): 22 entry(ies)

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               liv (0.731422)
               

               
               ret (0.643666)
               

               
               sag (0.548145)
               

               
               aor (0.390549)
               

               
               cmu (0.372787)
               

               
               gul (0.355177)
               

               
               fco (0.314416)
               

               
               kid (0.259471)
               

               
               hea (0.204499)
               

               
               ldo (0.194005)
               

               
               sin (0.174948)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               lyg (0.133103)
               

               
               cov (0.132153)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)

Expressed library(ies): 22 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.731422)
               

               
               ret (0.643666)
               

               
               sag (0.548145)
               

               
               aor (0.390549)
               

               
               cmu (0.372787)
               

               
               gul (0.355177)
               

               
               fco (0.314416)
               

               
               kid (0.259471)
               

               
               hea (0.204499)
               

               
               ldo (0.194005)
               

               
               sin (0.174948)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               lyg (0.133103)
               

               
               cov (0.132153)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)

	469-760, - strand, RNAz p=0.98772
	1105-1252, + strand, RNAz p=0.985341

	3-1442, gnl\|bosTau2\|chr3 (47546826-47545383)
	3-1442, gnl\|Hg17\|chr1 (82168692-82170128)
	3-1442, gnl\|Mm7\|chr3 (148717616-148716139)

	liv (0.731422)
	ret (0.643666)
	sag (0.548145)
	aor (0.390549)
	cmu (0.372787)
	gul (0.355177)
	fco (0.314416)
	kid (0.259471)
	hea (0.204499)
	ldo (0.194005)
	sin (0.174948)
	ski (0.146735)
	lin (0.145603)
	spl (0.143184)
	lyg (0.133103)
	cov (0.132153)
	sug (0.127291)
	tra (0.123092)
	eru (0.120048)
	ecc (0.115035)
	spc (0.113366)
	jej (0.0989218)