Ss1.1-Pig4-TMW8030D03.5
|
GAGAAGCCAAAGGTCAGGGGTTGTAGAGCCGTCATGGCGGCGCTGTGTAGGACCCGTGCT
GTGACCGCAAAGAGTCATTTTCTGCGAGTGTTTTTCTTCTCTCGGCCCTGTAGAGGCACA
GGCACTGAAAGTGGCTCCGGAAGCGAAAGTTCTGAGTCCACGGAGCCTAAACAGCGCCCA
GGCGGCTTCGCGAGCGCTTTGGAGCGGCACTCCGAGTTGCAGCAGAAGGCGGAGTTCGGG
CGGATGAGAGGCTCTCCGAAAAATGTGGAGTCCTTCGCATCTATGCTGAGACATTCCCCT
CTTACACAGATGGGACCTGCCAAGAATAAACTAGTCATTGGACAAATCTTTCATATTGTG
GAGGATGATCTTTATATAGATTTTGGCGGCAAGTTTCACTGTGTGTGTAAAAGACCAGAA
GTGGACGGAGAGAAATACCAGAAAGGAACCAGAGTCCGACTGCGACTATTAGATCTTGAA
CTCACATCTAGGTTCCTGGGAGCAACAACAGATACAACTATCCTAGAAGCTGATGCAGTT
CTGTTAGGACTCCAGGAGAGTAAAGACTCAAAATCAAAAGAGGAACGTCATGAAAAATAA
AAGAACTTTGCTTAGTGCATTCCCTCCTTTTTTGTTGAACCCAGGTATTATTCATCAAGA
ATGCAATTAGACAATTATGAGTAAATGATTGAAAGGCATAATAAATGGAAGCTATAATTA
TAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GAGAAGCCAAAGGTCAGGGGTTGTAGAGCCGTCATGGCGGCGCTGTGTAGGACCCGTGCT
GTGACCGCAAAGAGTCATTTTCTGCGAGTGTTTTTCTTCTCTCGGCCCTGTAGAGGCACA
GGCACTGAAAGTGGCTCCGGAAGCGAAAGTTCTGAGTCCACGGAGCCTAAACAGCGCCCA
GGCGGCTTCGCGAGCGCTTTGGAGCGGCACTCCGAGTTGCAGCAGAAGGCGGAGTTCGGG
CGGATGAGAGGCTCTCCGAAAAATGTGGAGTCCTTCGCATCTATGCTGAGACATTCCCCT
CTTACACAGATGGGACCTGCCAAGAATAAACTAGTCATTGGACAAATCTTTCATATTGTG
GAGGATGATCTTTATATAGATTTTGGCGGCAAGTTTCACTGTGTGTGTAAAAGACCAGAA
GTGGACGGAGAGAAATACCAGAAAGGAACCAGAGTCCGACTGCGACTATTAGATCTTGAA
CTCACATCTAGGTTCCTGGGAGCAACAACAGATACAACTATCCTAGAAGCTGATGCAGTT
CTGTTAGGACTCCAGGAGAGTAAAGACTCAAAATCAAAAGAGGAACGTCATGAAAAATAA
AAGAACTTTGCTTAGTGCATTCCCTCCTTTTTTGTTGAACCCAGGTATTATTCATCAAGA
ATGCAATTAGACAATTATGAGTAAATGATTGAAAGGCATAATAAATGGAAGCTATAATTA
TAAAAAAAAAAA
|
|
gi|61875928|ref|XP_615333.1| |
Protein identifier
|
gi|61875928|ref|XP_615333.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
1-248, gnl|bosTau2|chr14 (24487154-24486907) |
|
1-248, gnl|Hg17|chr8 (81105071-81104806) |
|
1-248, gnl|Mm7|chr3 (8930258-8929980) |
| |
|
250-435, gnl|bosTau2|chr14 (24471966-24471781) |
|
250-435, gnl|canFam2|chr29 (30393998-30394192) |
|
250-435, gnl|danRer3|chr22 (29058933-29059114) |
|
250-435, gnl|dasNov1|scaffold_106500 (4761-4567) |
|
250-435, gnl|echTel1|scaffold_165003 (3079-3264) |
|
250-435, gnl|fr1|chrUn (270382668-270382482) |
|
250-435, gnl|galGal2|chr2 (120231483-120231673) |
|
250-435, gnl|hg17|chr8 (81077778-81077972) |
|
250-435, gnl|Hg17|chr8 (81077970-81077785) |
|
250-435, gnl|loxAfr1|scaffold_8286 (12255-12449) |
|
250-435, gnl|mm7|chr3 (8906410-8906604) |
|
250-435, gnl|Mm7|chr3 (8906602-8906417) |
|
250-435, gnl|monDom2|scaffold_4 (78037165-78036968) |
|
250-435, gnl|oryCun1|scaffold_215258 (116875-116681) |
|
250-435, gnl|panTro1|chr7 (83205153-83205347) |
|
250-435, gnl|rheMac2|chr8 (82432928-82433122) |
|
250-435, gnl|rn3|chr2 (94867524-94867330) |
|
250-435, gnl|xenTro1|scaffold_205 (967932-968124) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-248, gnl|bosTau2|chr14 (24487154-24486907) |
|
1-248, gnl|Hg17|chr8 (81105071-81104806) |
|
1-248, gnl|Mm7|chr3 (8930258-8929980) |
| |
|
250-435, gnl|bosTau2|chr14 (24471966-24471781) |
|
250-435, gnl|canFam2|chr29 (30393998-30394192) |
|
250-435, gnl|danRer3|chr22 (29058933-29059114) |
|
250-435, gnl|dasNov1|scaffold_106500 (4761-4567) |
|
250-435, gnl|echTel1|scaffold_165003 (3079-3264) |
|
250-435, gnl|fr1|chrUn (270382668-270382482) |
|
250-435, gnl|galGal2|chr2 (120231483-120231673) |
|
250-435, gnl|hg17|chr8 (81077778-81077972) |
|
250-435, gnl|Hg17|chr8 (81077970-81077785) |
|
250-435, gnl|loxAfr1|scaffold_8286 (12255-12449) |
|
250-435, gnl|mm7|chr3 (8906410-8906604) |
|
250-435, gnl|Mm7|chr3 (8906602-8906417) |
|
250-435, gnl|monDom2|scaffold_4 (78037165-78036968) |
|
250-435, gnl|oryCun1|scaffold_215258 (116875-116681) |
|
250-435, gnl|panTro1|chr7 (83205153-83205347) |
|
250-435, gnl|rheMac2|chr8 (82432928-82433122) |
|
250-435, gnl|rn3|chr2 (94867524-94867330) |
|
250-435, gnl|xenTro1|scaffold_205 (967932-968124) |
|
hea (1.22699) |
|
pro (0.512033) |
|
ste (0.405625) |
|
isp (0.300752) |
|
thg (0.253582) |
|
cbe (0.239234) |
|
sin (0.174948) |
|
rec (0.17307) |
|
cje (0.165235) |
|
cki (0.165235) |
|
cag (0.151194) |
|
bfe (0.149858) |
|
spl (0.143184) |
|
hlv (0.139256) |
|
nca (0.136874) |
|
che (0.136314) |
|
ssp (0.13552) |
|
lyg (0.133103) |
|
kid (0.129735) |
|
pgl (0.118483) |
|
jej (0.0989218) |
|
ldo (0.0970026) |
|
hea (1.22699) |
|
pro (0.512033) |
|
ste (0.405625) |
|
isp (0.300752) |
|
thg (0.253582) |
|
cbe (0.239234) |
|
sin (0.174948) |
|
rec (0.17307) |
|
cje (0.165235) |
|
cki (0.165235) |
|
cag (0.151194) |
|
bfe (0.149858) |
|
spl (0.143184) |
|
hlv (0.139256) |
|
nca (0.136874) |
|
che (0.136314) |
|
ssp (0.13552) |
|
lyg (0.133103) |
|
kid (0.129735) |
|
pgl (0.118483) |
|
jej (0.0989218) |
|
ldo (0.0970026) |
