Ss1.1-Pig4-TMW8030D09.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGAAGGAATGTTTACCCTTGCGGAAGTTGCTTCACTTAATGACATTCAGCCAACGTACCG AATCCTGAAGCCATGGTGGGACGTGTTCATGGATTACCTGGCTGTCGTGATGCTGATGGT GGCCATCTTTGCAGGAACCATGCAACTCACCAAAGATCAGGTGGTCTGCTTGCCAGTGTT ACCATCTCCTGTGAGTTCAAAGGCGCACACGTCACCCGGGAACACCGACGTCACCACCAG CGTCCCGCCGATGGAACCCACCACAGACCAAGACCAAGACGTGCAGACGACACACGAGAT TTCCTTCGGCACGTCCGCTGTGACACCTGACATACCTCTCAGATCCACACCCCCTCACAC AGACTCCCCGGGTCCGGGCCAGGAGGCCAAGAAAGAGAAGAAAGACCCAACAGGCCGGAA AACAAACTTGGATTTCCAGCAGTATGTATTTATCAACCAGATGTGCTACCACCTGGCCCT GCCGTGGTACTCCAAGTACTTCCCATACCTGGCCCTCATACACACCATCATTCTCATGGT CAGCAGCAACTTCTGGTTCAAGTATCCCAAGACGTGCTCGAAGGTGGAACACTTTGTTTC CATCTTAGGGAAGTGCTTCGAGTCTCCCTGGACGACCAAGGCGCTGTCCGAGACGGCGTG CGAGGACTCGGAGGAGAACAAGCAGAGGATGACGGGCGCCCAGGCGCTGCCGAAGCACGT GTCCACCAGCAGCGACGAGGGCAGCCCCAGCGCCAGCACCCCGATGATCAACAAGACCGG CTTCAAGTTCTCGGCCGAGAAGCCCGTGATCGAAGTCCCCAGCATGACCATCCTGGACAA AAAGGACGGGGAACAGGCCAAAGCCCTGTTTGAGAAAGTGAGGAAGTTCCGGGCGCACGT GGAGGACAGCGACCTGATCTACAAACTCTACGTGGTCCAGACGGTCATCAAGACGGCCAA GTTCATCTTCATCCTCTGCTACACGGCCAACTTCGTCAACGCCATCAGCTTCGAGCACGT GTGCAAGCCCAAGGTGGAGCACCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGAAGGAATGTTTACCCTTGCGGAAGTTGCTTCACTTAATGACATTCAGCCAACGTACCG AATCCTGAAGCCATGGTGGGACGTGTTCATGGATTACCTGGCTGTCGTGATGCTGATGGT GGCCATCTTTGCAGGAACCATGCAACTCACCAAAGATCAGGTGGTCTGCTTGCCAGTGTT ACCATCTCCTGTGAGTTCAAAGGCGCACACGTCACCCGGGAACACCGACGTCACCACCAG CGTCCCGCCGATGGAACCCACCACAGACCAAGACCAAGACGTGCAGACGACACACGAGAT TTCCTTCGGCACGTCCGCTGTGACACCTGACATACCTCTCAGATCCACACCCCCTCACAC AGACTCCCCGGGTCCGGGCCAGGAGGCCAAGAAAGAGAAGAAAGACCCAACAGGCCGGAA AACAAACTTGGATTTCCAGCAGTATGTATTTATCAACCAGATGTGCTACCACCTGGCCCT GCCGTGGTACTCCAAGTACTTCCCATACCTGGCCCTCATACACACCATCATTCTCATGGT CAGCAGCAACTTCTGGTTCAAGTATCCCAAGACGTGCTCGAAGGTGGAACACTTTGTTTC CATCTTAGGGAAGTGCTTCGAGTCTCCCTGGACGACCAAGGCGCTGTCCGAGACGGCGTG CGAGGACTCGGAGGAGAACAAGCAGAGGATGACGGGCGCCCAGGCGCTGCCGAAGCACGT GTCCACCAGCAGCGACGAGGGCAGCCCCAGCGCCAGCACCCCGATGATCAACAAGACCGG CTTCAAGTTCTCGGCCGAGAAGCCCGTGATCGAAGTCCCCAGCATGACCATCCTGGACAA AAAGGACGGGGAACAGGCCAAAGCCCTGTTTGAGAAAGTGAGGAAGTTCCGGGCGCACGT GGAGGACAGCGACCTGATCTACAAACTCTACGTGGTCCAGACGGTCATCAAGACGGCCAA GTTCATCTTCATCCTCTGCTACACGGCCAACTTCGTCAACGCCATCAGCTTCGAGCACGT GTGCAAGCCCAAGGTGGAGCACCT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 203-319, - strand, RNAz p=0.767711 | |
| 400-559, - strand, RNAz p=0.730954 | |
| 597-716, - strand, RNAz p=0.815725 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 203-319, - strand, RNAz p=0.767711 | |
| 400-559, - strand, RNAz p=0.730954 | |
| 597-716, - strand, RNAz p=0.815725 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 4-1044, gnl|bosTau2|chr3 (40815191-40814151) | |
| 4-1044, gnl|Hg17|chr1 (90110645-90111685) | |
| 4-1044, gnl|Mm7|chr5 (104988736-104989779) | |
| 41-174, gnl|bosTau2|chr11 (78733955-78734088) | |
| 41-174, gnl|canFam2|chr9 (58086237-58086087) | |
| 41-174, gnl|danRer3|chr21 (907417-907267) | |
| 41-174, gnl|dasNov1|scaffold_74159 (3271-3120) | |
| 41-174, gnl|echTel1|scaffold_291436 (69351-69201) | |
| 41-174, gnl|fr1|chrUn (59175844-59175694) | |
| 41-174, gnl|galGal2|chr17 (5447801-5447651) | |
| 41-174, gnl|hg17|chr9 (128748996-128749146) | |
| 41-174, gnl|Hg17|chr9 (128749031-128749164) | |
| 41-174, gnl|loxAfr1|scaffold_31705 (20606-20756) | |
| 41-174, gnl|mm7|chr2 (30262485-30262635) | |
| 41-174, gnl|Mm7|chr2 (30262520-30262653) | |
| 41-174, gnl|monDom2|scaffold_51 (3487473-3487623) | |
| 41-174, gnl|oryCun1|scaffold_175208 (7118-6970) | |
| 41-174, gnl|panTro1|chr11 (113590262-113590412) | |
| 41-174, gnl|rheMac2|chr15 (9951163-9951013) | |
| 41-174, gnl|rn3|chr3 (9298985-9299135) | |
| 41-174, gnl|tetNig1|chr4 (4178569-4178419) | |
| 41-174, gnl|xenTro1|scaffold_82 (485666-485516) | |
| 478-1014, gnl|bosTau2|chr11 (78734272-78734796) | |
| 478-1014, gnl|Hg17|chr9 (128749348-128749872) | |
| 478-1014, gnl|Mm7|chr2 (30262837-30263361) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 4-1044, gnl|bosTau2|chr3 (40815191-40814151) | |
| 4-1044, gnl|Hg17|chr1 (90110645-90111685) | |
| 4-1044, gnl|Mm7|chr5 (104988736-104989779) | |
| 41-174, gnl|bosTau2|chr11 (78733955-78734088) | |
| 41-174, gnl|canFam2|chr9 (58086237-58086087) | |
| 41-174, gnl|danRer3|chr21 (907417-907267) | |
| 41-174, gnl|dasNov1|scaffold_74159 (3271-3120) | |
| 41-174, gnl|echTel1|scaffold_291436 (69351-69201) | |
| 41-174, gnl|fr1|chrUn (59175844-59175694) | |
| 41-174, gnl|galGal2|chr17 (5447801-5447651) | |
| 41-174, gnl|hg17|chr9 (128748996-128749146) | |
| 41-174, gnl|Hg17|chr9 (128749031-128749164) | |
| 41-174, gnl|loxAfr1|scaffold_31705 (20606-20756) | |
| 41-174, gnl|mm7|chr2 (30262485-30262635) | |
| 41-174, gnl|Mm7|chr2 (30262520-30262653) | |
| 41-174, gnl|monDom2|scaffold_51 (3487473-3487623) | |
| 41-174, gnl|oryCun1|scaffold_175208 (7118-6970) | |
| 41-174, gnl|panTro1|chr11 (113590262-113590412) | |
| 41-174, gnl|rheMac2|chr15 (9951163-9951013) | |
| 41-174, gnl|rn3|chr3 (9298985-9299135) | |
| 41-174, gnl|tetNig1|chr4 (4178569-4178419) | |
| 41-174, gnl|xenTro1|scaffold_82 (485666-485516) | |
| 478-1014, gnl|bosTau2|chr11 (78734272-78734796) | |
| 478-1014, gnl|Hg17|chr9 (128749348-128749872) | |
| 478-1014, gnl|Mm7|chr2 (30262837-30263361) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| csp (0.161186) | |
| cty (0.10408) |