Non-Coding RNA Search

Ss1.1-Pig4-TMW8030E12.3

Sequence:


               
               AAAACACAAAAACCAGAAAACAAAAACCCACCCCGACTACAGCCAGTACAGTACCTATTG
ATAAATGATCGTATGTAACTTGTTTTGCAAGGTGACTCGTGCCCTACAATTAAAGCGGGA
TGCTCTTTAGGAATACATCGTCTTAGTGTAGTTTTTGAATAGACCGTTTTCATCATTCAC
GGAGGATGAAGAAAATCACACAACTTGTTGGCTTTTTACATTAGACTTAACAACAGATAA
AGTCATTGGGAGAATAACTATCCCCAATGAATTTTTCTTTTTGGTTTGCTTTCCTTTTTT
TTTTTAACTGGGAGAAGGGAAAGAAGTCAGGGATTTAAAACCAAACTGGAGGGCGAGGTG
GGAGATCCTGCCAAGAGTCCAGATGGGCCCTGTGCCTTAACGTGCGGTGAGGCCGTCGTC
TGGCCCCCGCGTGGTCTTCGGCAGGGCCGTCAGCATCTTGGGCTTTGCCTTGGGTCTGGG
GGCTTTGATCCTCCGCTGAGCTGCAGAGCAGGAGTTTGGAAGTGAGTGATTTTGATCCTT
TCCGGCTGCTTTGGTAACTTCTCACGGGGGCCATATTTTACAGCTTTGAGTTTTTTAAAC
AACAAAATATACTTCCTGGTTCATTGTAGGTACCTATAAGTGTTCAATAAATAAATCCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAACACAAAAACCAGAAAACAAAAACCCACCCCGACTACAGCCAGTACAGTACCTATTG
ATAAATGATCGTATGTAACTTGTTTTGCAAGGTGACTCGTGCCCTACAATTAAAGCGGGA
TGCTCTTTAGGAATACATCGTCTTAGTGTAGTTTTTGAATAGACCGTTTTCATCATTCAC
GGAGGATGAAGAAAATCACACAACTTGTTGGCTTTTTACATTAGACTTAACAACAGATAA
AGTCATTGGGAGAATAACTATCCCCAATGAATTTTTCTTTTTGGTTTGCTTTCCTTTTTT
TTTTTAACTGGGAGAAGGGAAAGAAGTCAGGGATTTAAAACCAAACTGGAGGGCGAGGTG
GGAGATCCTGCCAAGAGTCCAGATGGGCCCTGTGCCTTAACGTGCGGTGAGGCCGTCGTC
TGGCCCCCGCGTGGTCTTCGGCAGGGCCGTCAGCATCTTGGGCTTTGCCTTGGGTCTGGG
GGCTTTGATCCTCCGCTGAGCTGCAGAGCAGGAGTTTGGAAGTGAGTGATTTTGATCCTT
TCCGGCTGCTTTGGTAACTTCTCACGGGGGCCATATTTTACAGCTTTGAGTTTTTTAAAC
AACAAAATATACTTCCTGGTTCATTGTAGGTACCTATAAGTGTTCAATAAATAAATCCAT

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               17-427, gnl|bosTau2|chr13 (9067308-9067706)
               

               
               17-427, gnl|Hg17|chr10 (35900625-35901043)
               

               
               17-427, gnl|Mm7|chr18 (9517814-9517447)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               17-427, gnl|bosTau2|chr13 (9067308-9067706)
               

               
               17-427, gnl|Hg17|chr10 (35900625-35901043)
               

               
               17-427, gnl|Mm7|chr18 (9517814-9517447)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               fce (0.271592)
               

               
               fcc (0.197785)
               

               
               cki (0.165235)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               fcc (0.197785)
               

               
               cki (0.165235)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)

	17-427, gnl\|bosTau2\|chr13 (9067308-9067706)
	17-427, gnl\|Hg17\|chr10 (35900625-35901043)
	17-427, gnl\|Mm7\|chr18 (9517814-9517447)

	fce (0.271592)
	fcc (0.197785)
	cki (0.165235)
	hyp (0.142837)
	pla (0.133672)