Non-Coding RNA Search

Ss1.1-Pig4-TMW8030E12.5

Sequence:


               
               TATAAAATTTTTTAAAAATCTAAAATTAAAAAAAAAAAAAGGTGGGGGTGGGGGTGGGTA
TGCCAGCAGAAGAGCATTGAAGGGCACCATGTTCCTATTTACTCTGAGGTATTTTTCACA
GAATGATTGAATAAAAAACGACTTGCATTTTCATTGTGGGTGCTTAGTGAAGTTATACAA
AATTAAACTGTGAAGGTTTATGCTTCACTGATTACCACCATCTGTTTTCATTTCTGACCA
TCCATCATTTCCTTATGGGTGAGAAAAAAATTTTCTATATCAAGGAGAATTAAAGGGTTA
ATGATAGAATACCACATGAAGTCTAAGAATCCGGGTCAGTGAAGCATACAGTTTTGGGTT
TTGCATATTTTCTTGGGTCACCTTGAGAGAGGTTTCTAAGTTTTTCCTTCATGTCTCTGA
GGCAAATGGCAGCAGATAGTCTGTGTTTCACTCTCCTCCTGTGTGAGCCTGGAAAACTTT
GGAATCTTCCGTTACTAGTCCTGTGCCCTGAACTCACACACTGCTCCCCAGACATGCCTG
CTCCCGAGGAGACAAGCAGTGTTGACAAGTGGGAAGGCTCAGAAATACCCACCATCCCAA
GAACACCAAGCCACCCAGTGCTGGTCAGGATTCCGTGAAATTGGCAGCGCCTGTAAACAT
AATTGTTTGAGCCAGAAGTACCATCAGGTTCTTTCTGGTTTAACCTTTGAAAAGCAAACA
AGCAGAAGATGAAGCGTTACTTACCCTTCCGTTGTCAATGCGTTGATGTGTTCTGTATGG
GTTCCGAAATCAGCTTCTCTCTTCAAGTAAGGGTTGGATTTAGAACTTGAAACAGAGACC
TGAAAGTGTAGAAAATAGCATTTTATATTCCCTAATCTATATAGCGTCAAAAGGGACATA
TTTTCTTAGCTGGATATGAATACCTCTCGAACAGAAATTAGTTCCTCCCGTGTAAAGTAT
CTTATTTTCCCGATCCAGTTCAGGAAAGAGGTTCAGCTGCCTTTAAAGCAGAAATCTTAT
TTTTATCCCTTTTATTTGAATGAGAGAGATTTGAAAATTGAATTATGTAAATATTTCAAT
GCATCTGCTATTATTTTGTGGAGTTTATTAAACTACTTTAAAAAATTGTATAGTCTATTT
ATTGTATGTATGTACATACAGTCTGATAACTTAAAATTTAAAGTGGATTCCGTAAAACCT
GACTCAGTCTTGTTTAGACTCTTGAATATTGTTTTAGCCTTGTGCACTGGACTCTACCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATAAAATTTTTTAAAAATCTAAAATTAAAAAAAAAAAAAGGTGGGGGTGGGGGTGGGTA
TGCCAGCAGAAGAGCATTGAAGGGCACCATGTTCCTATTTACTCTGAGGTATTTTTCACA
GAATGATTGAATAAAAAACGACTTGCATTTTCATTGTGGGTGCTTAGTGAAGTTATACAA
AATTAAACTGTGAAGGTTTATGCTTCACTGATTACCACCATCTGTTTTCATTTCTGACCA
TCCATCATTTCCTTATGGGTGAGAAAAAAATTTTCTATATCAAGGAGAATTAAAGGGTTA
ATGATAGAATACCACATGAAGTCTAAGAATCCGGGTCAGTGAAGCATACAGTTTTGGGTT
TTGCATATTTTCTTGGGTCACCTTGAGAGAGGTTTCTAAGTTTTTCCTTCATGTCTCTGA
GGCAAATGGCAGCAGATAGTCTGTGTTTCACTCTCCTCCTGTGTGAGCCTGGAAAACTTT
GGAATCTTCCGTTACTAGTCCTGTGCCCTGAACTCACACACTGCTCCCCAGACATGCCTG
CTCCCGAGGAGACAAGCAGTGTTGACAAGTGGGAAGGCTCAGAAATACCCACCATCCCAA
GAACACCAAGCCACCCAGTGCTGGTCAGGATTCCGTGAAATTGGCAGCGCCTGTAAACAT
AATTGTTTGAGCCAGAAGTACCATCAGGTTCTTTCTGGTTTAACCTTTGAAAAGCAAACA
AGCAGAAGATGAAGCGTTACTTACCCTTCCGTTGTCAATGCGTTGATGTGTTCTGTATGG
GTTCCGAAATCAGCTTCTCTCTTCAAGTAAGGGTTGGATTTAGAACTTGAAACAGAGACC
TGAAAGTGTAGAAAATAGCATTTTATATTCCCTAATCTATATAGCGTCAAAAGGGACATA
TTTTCTTAGCTGGATATGAATACCTCTCGAACAGAAATTAGTTCCTCCCGTGTAAAGTAT
CTTATTTTCCCGATCCAGTTCAGGAAAGAGGTTCAGCTGCCTTTAAAGCAGAAATCTTAT
TTTTATCCCTTTTATTTGAATGAGAGAGATTTGAAAATTGAATTATGTAAATATTTCAAT
GCATCTGCTATTATTTTGTGGAGTTTATTAAACTACTTTAAAAAATTGTATAGTCTATTT
ATTGTATGTATGTACATACAGTCTGATAACTTAAAATTTAAAGTGGATTCCGTAAAACCT
GACTCAGTCTTGTTTAGACTCTTGAATATTGTTTTAGCCTTGTGCACTGGACTCTACCTC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               921-1040, - strand, RNAz p=0.628632
               

               
               1081-1236, - strand, RNAz p=0.844539

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               921-1040, - strand, RNAz p=0.628632
               

               
               1081-1236, - strand, RNAz p=0.844539

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-1260, gnl|bosTau2|chr13 (9065841-9067085)
               

               
               4-1260, gnl|Hg17|chr10 (35899138-35900393)
               

               
               4-1260, gnl|Mm7|chr18 (9519181-9518006)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-1260, gnl|bosTau2|chr13 (9065841-9067085)
               

               
               4-1260, gnl|Hg17|chr10 (35899138-35900393)
               

               
               4-1260, gnl|Mm7|chr18 (9519181-9518006)

Expressed library(ies): 22 entry(ies)

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Expressed library(ies): 22 entry(ies)

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               fhi (0.508733)
               

               
               eje (0.197668)
               

               
               sag (0.182715)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               cje (0.165235)
               

               
               cki (0.165235)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               eli (0.151814)
               

               
               lun (0.150489)
               

               
               ski (0.146735)
               

               
               cst (0.140036)
               

               
               ste (0.135208)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

Expressed library(ies): 22 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.508733)
               

               
               eje (0.197668)
               

               
               sag (0.182715)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               cje (0.165235)
               

               
               cki (0.165235)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               eli (0.151814)
               

               
               lun (0.150489)
               

               
               ski (0.146735)
               

               
               cst (0.140036)
               

               
               ste (0.135208)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

	921-1040, - strand, RNAz p=0.628632
	1081-1236, - strand, RNAz p=0.844539

	4-1260, gnl\|bosTau2\|chr13 (9065841-9067085)
	4-1260, gnl\|Hg17\|chr10 (35899138-35900393)
	4-1260, gnl\|Mm7\|chr18 (9519181-9518006)

	fhi (0.508733)
	eje (0.197668)
	sag (0.182715)
	fty (0.17584)
	ill (0.175593)
	ton (0.1755)
	fbs (0.175346)
	cje (0.165235)
	cki (0.165235)
	fco (0.157208)
	tbr (0.154178)
	eli (0.151814)
	lun (0.150489)
	ski (0.146735)
	cst (0.140036)
	ste (0.135208)
	ova (0.129132)
	ese (0.126502)
	spc (0.113366)
	cty (0.10408)
	jej (0.0989218)
	ldo (0.0970026)