Non-Coding RNA Search

Ss1.1-Pig4-TMW8030E21.5

Sequence:


               
               GCATTACCTTCAGAGAGTCCACATTAACGTCCTCAGAGAGTGCTGGAAAACTGTAATGTT
CAATTGGTAACTGGTATTTTACCTCTCAACATTTCCCTTCACTCTGACTATTATTGTTGG
AAATGTATACATTTATTTACAGAGTGTGTTGTGAGCATGAACTTTATAGTAGTTCATAAG
GAACACACTTTGGAAAAGATTTGTTTTGACATTTTCAACAATTGGAAAAATTATCAATTT
GTATGTTTTGTTCTTATTGAATTGCCACCCGCGAAAAATAGGAAAATTATTTGAAATGAT
GGATTGGGTTAAGCATTTAAAGCTACTAATATTAAATAATAAAAAACCTAACTTTATAGC
ACATCCTGGTTAACTGAAGGAGTTAAATATCTTTGACAAAGTGTCATAATTTATAGATGG
GAATTTTCTTTTATAAGTTCCCATGTCCTACATTTTGCATAGAAGTAATAAATTGTGTTA
TATATGATAATTTACATAAAACCACTAATTGTTCCATTAAGCTTTACAGAAAATAGAACC
CCTACTACAACACATTTATATAACAACTTGCTATGCTAAATACAGCAAAAAAATCTACTT
ATGAGCAATATATATAACACAATATGTGCTTTTTTTAATGTGTTCAGTGTTAGCCCAATT
CTAAAGTTGGATTTGACTAAAGCAATACATAAGACCATTTGCTAAACCGTTCATCTTTAC
TAAACAGTGGACAAAATTATAATTTCTAACTTACATTGTACTCTCTTAAATGCCAATTAC
AGTCCCTTACTGGAATCTTTAACTGTAGCTGCTTTGCAGTCAAACTGCTTTTATTGGGCA
GTTAATATTTTATTATTGGAATTCAGACACTATTATACTCACCATGTTTGTTTTTAATCA
AGTATTACCTAAAAATGTACAAATTAGTGAAATGGTTAAACTTCTGCACTTTCTTAATTA
TCAGTCTTCATACCAAGTGTTGATATATAAATTTGTATTGGGTGCAGGTTACAATGTTGA
AGCCATATGAGTTTATATTGATTTTTTTTCATTTAAAAATCCACTAATGGTGTAAAAAAA
GACCAATAGATTTTTCAATGGGAAATGTATTTAGCAAGCTGGTTCTTGCTTATGTATAGT
GATAAACTTTGTAGCTGCCTCTTTAACAAGAATTTGTAAACACAGAACTCTAACAAATGT
GAGTTTTTAAGAATTGTTATTTACTACTTGGAGTTGTAATTAGAACAATGCAAATCTTAC
AAAATTTTGTAAATATTTTTGATTTTTCATAAAAATGTAAATTTTACATGAAAAGTTGTG
CCCTTAATAAACATGTAATATATAATTTAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCATTACCTTCAGAGAGTCCACATTAACGTCCTCAGAGAGTGCTGGAAAACTGTAATGTT
CAATTGGTAACTGGTATTTTACCTCTCAACATTTCCCTTCACTCTGACTATTATTGTTGG
AAATGTATACATTTATTTACAGAGTGTGTTGTGAGCATGAACTTTATAGTAGTTCATAAG
GAACACACTTTGGAAAAGATTTGTTTTGACATTTTCAACAATTGGAAAAATTATCAATTT
GTATGTTTTGTTCTTATTGAATTGCCACCCGCGAAAAATAGGAAAATTATTTGAAATGAT
GGATTGGGTTAAGCATTTAAAGCTACTAATATTAAATAATAAAAAACCTAACTTTATAGC
ACATCCTGGTTAACTGAAGGAGTTAAATATCTTTGACAAAGTGTCATAATTTATAGATGG
GAATTTTCTTTTATAAGTTCCCATGTCCTACATTTTGCATAGAAGTAATAAATTGTGTTA
TATATGATAATTTACATAAAACCACTAATTGTTCCATTAAGCTTTACAGAAAATAGAACC
CCTACTACAACACATTTATATAACAACTTGCTATGCTAAATACAGCAAAAAAATCTACTT
ATGAGCAATATATATAACACAATATGTGCTTTTTTTAATGTGTTCAGTGTTAGCCCAATT
CTAAAGTTGGATTTGACTAAAGCAATACATAAGACCATTTGCTAAACCGTTCATCTTTAC
TAAACAGTGGACAAAATTATAATTTCTAACTTACATTGTACTCTCTTAAATGCCAATTAC
AGTCCCTTACTGGAATCTTTAACTGTAGCTGCTTTGCAGTCAAACTGCTTTTATTGGGCA
GTTAATATTTTATTATTGGAATTCAGACACTATTATACTCACCATGTTTGTTTTTAATCA
AGTATTACCTAAAAATGTACAAATTAGTGAAATGGTTAAACTTCTGCACTTTCTTAATTA
TCAGTCTTCATACCAAGTGTTGATATATAAATTTGTATTGGGTGCAGGTTACAATGTTGA
AGCCATATGAGTTTATATTGATTTTTTTTCATTTAAAAATCCACTAATGGTGTAAAAAAA
GACCAATAGATTTTTCAATGGGAAATGTATTTAGCAAGCTGGTTCTTGCTTATGTATAGT
GATAAACTTTGTAGCTGCCTCTTTAACAAGAATTTGTAAACACAGAACTCTAACAAATGT
GAGTTTTTAAGAATTGTTATTTACTACTTGGAGTTGTAATTAGAACAATGCAAATCTTAC
AAAATTTTGTAAATATTTTTGATTTTTCATAAAAATGTAAATTTTACATGAAAAGTTGTG
CCCTTAATAAACATGTAATATATAATTTAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1030-1133, - strand, RNAz p=0.986071

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1030-1133, - strand, RNAz p=0.986071

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-1349, gnl|bosTau2|chr20 (5478935-5480279)
               

               
               3-1349, gnl|Hg17|chr5 (72420716-72422105)
               

               
               3-1349, gnl|Mm7|chr13 (95794530-95793203)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-1349, gnl|bosTau2|chr20 (5478935-5480279)
               

               
               3-1349, gnl|Hg17|chr5 (72420716-72422105)
               

               
               3-1349, gnl|Mm7|chr13 (95794530-95793203)

Expressed library(ies): 20 entry(ies)

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Expressed library(ies): 20 entry(ies)

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               lin (0.582411)
               

               
               cbl (0.573987)
               

               
               liv (0.438853)
               

               
               ret (0.3862)
               

               
               ebs (0.236602)
               

               
               mgp (0.230681)
               

               
               ton (0.1755)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               nje (0.16592)
               

               
               csp (0.161186)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               eli (0.151814)
               

               
               ski (0.146735)
               

               
               ste (0.135208)
               

               
               kid (0.129735)
               

               
               tra (0.123092)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

Expressed library(ies): 20 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.582411)
               

               
               cbl (0.573987)
               

               
               liv (0.438853)
               

               
               ret (0.3862)
               

               
               ebs (0.236602)
               

               
               mgp (0.230681)
               

               
               ton (0.1755)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               nje (0.16592)
               

               
               csp (0.161186)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               eli (0.151814)
               

               
               ski (0.146735)
               

               
               ste (0.135208)
               

               
               kid (0.129735)
               

               
               tra (0.123092)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

	3-1349, gnl\|bosTau2\|chr20 (5478935-5480279)
	3-1349, gnl\|Hg17\|chr5 (72420716-72422105)
	3-1349, gnl\|Mm7\|chr13 (95794530-95793203)

	lin (0.582411)
	cbl (0.573987)
	liv (0.438853)
	ret (0.3862)
	ebs (0.236602)
	mgp (0.230681)
	ton (0.1755)
	rec (0.17307)
	duo (0.172801)
	nje (0.16592)
	csp (0.161186)
	mga (0.160205)
	fco (0.157208)
	eli (0.151814)
	ski (0.146735)
	ste (0.135208)
	kid (0.129735)
	tra (0.123092)
	eje (0.0988338)
	ldo (0.0970026)