Ss1.1-Pig4-TMW8030F03.3
|
CCTTCTGGCTTCTCACAGGACGTGGAGCAGCCTTCAGAGGTGCTGGTCCAACCAGATGTT
CCTGCCGCCGCTGGCACATCGTCTGTGGAGACTCACTCTTCAGATTCTGGCACGCTACGC
CGTGTTTCTCAAGGAGCTTTCACTTAGGCCCATCTCTAATGAAAGCACCAAGGATATTAA
AAAGCCTTTGGTAACTGGCAGCAAAGACCCCTCCGTCGCCCAAGGAAATAGCGAGGACCA
AGGCAGCGGGACTTCCGAGGCGAAGCCCGTGGTCTCTGTCTCCAGCACTCAGCTTGTGTA
CGCAGTTGCAGACCTGGACAGGCTTCAGGAGCAGCTTCCAGAACTCTTGGAAACAATCAA
GCCAAAACTTGAAATGATTGGCTTTAAGAATTTTTCTTCTATCTCAGCAGCCCTGGAGGA
CTCCCAGCTGTCCTTGTCCGCCTGCATGCCCGCCTTGAGTAGCAGGATCATCCTGGACCT
GAGTGAGTCTTGCTTCAGTTACTTGAAAAGTGCCCTGGAGGTTCCCAGGCTTTACCGAAG
AACCAATAAGGAGGTGCCAACTACTGCTTCCTCGTACGTGGACAGTGCTCTGAAGCCATT
TCACCAGCTTCAGAGTGGGCACAAGGATAAGCTCAAACAGGCCGTCATTCAGCAGTGGTT
GGAAGGCGCGCTATCTGAGAGCACTCATAAGTACTACGAGACGGTGTCGGATGTGCTGAG
CTCTGTGAGGAAGATGGAGGAGAGCCTCAAGCGGCTCAAACAGGCCCGCAGAGCCACGCC
CACCAACCCCGGGCCCAGCGGCAGTGGTGGCATGAGTGATGACGACAAGATCAGACTGCA
GTTGGCCTTGGACGTGGACTACTTGGGGGAGCAGATACAAAAGCTGGGCCTGCAGGCGAA
GGACATAAGGAGCTTCCCAGCTCTTGCGGAGCTTGTTGCTGCTGCGCGCGACCAGGCGAC
GGCAGAGCAGCCTTAAGCATCTTGGCAGAGCCGGGGAGAGGCAGCTGGACCTCGAACTGC
AGGGAAGAAAGCGGCTCTTTGTTCTCTGTGGGCCTGTGGCAGAAAGACACATCTCCTGTC
CCCAGCCGCACCTGCTGCAGCTCCCTCGGTGAATTTGGGTCTCCTTTCCCAAAAAACACA
AAAGCCTTTTTCCATTGTATGGAAGATAGTTTTTAAGACATTTGAAACTTTCTACCATAG
TTTACAGAGCAAAGTTATTTTATTTTTATTGTAAATCTTACTGTGGAAGAGTTGATTCCC
AAAATATGATTGAAGTAAATACACGTATGTATGAAT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CCTTCTGGCTTCTCACAGGACGTGGAGCAGCCTTCAGAGGTGCTGGTCCAACCAGATGTT
CCTGCCGCCGCTGGCACATCGTCTGTGGAGACTCACTCTTCAGATTCTGGCACGCTACGC
CGTGTTTCTCAAGGAGCTTTCACTTAGGCCCATCTCTAATGAAAGCACCAAGGATATTAA
AAAGCCTTTGGTAACTGGCAGCAAAGACCCCTCCGTCGCCCAAGGAAATAGCGAGGACCA
AGGCAGCGGGACTTCCGAGGCGAAGCCCGTGGTCTCTGTCTCCAGCACTCAGCTTGTGTA
CGCAGTTGCAGACCTGGACAGGCTTCAGGAGCAGCTTCCAGAACTCTTGGAAACAATCAA
GCCAAAACTTGAAATGATTGGCTTTAAGAATTTTTCTTCTATCTCAGCAGCCCTGGAGGA
CTCCCAGCTGTCCTTGTCCGCCTGCATGCCCGCCTTGAGTAGCAGGATCATCCTGGACCT
GAGTGAGTCTTGCTTCAGTTACTTGAAAAGTGCCCTGGAGGTTCCCAGGCTTTACCGAAG
AACCAATAAGGAGGTGCCAACTACTGCTTCCTCGTACGTGGACAGTGCTCTGAAGCCATT
TCACCAGCTTCAGAGTGGGCACAAGGATAAGCTCAAACAGGCCGTCATTCAGCAGTGGTT
GGAAGGCGCGCTATCTGAGAGCACTCATAAGTACTACGAGACGGTGTCGGATGTGCTGAG
CTCTGTGAGGAAGATGGAGGAGAGCCTCAAGCGGCTCAAACAGGCCCGCAGAGCCACGCC
CACCAACCCCGGGCCCAGCGGCAGTGGTGGCATGAGTGATGACGACAAGATCAGACTGCA
GTTGGCCTTGGACGTGGACTACTTGGGGGAGCAGATACAAAAGCTGGGCCTGCAGGCGAA
GGACATAAGGAGCTTCCCAGCTCTTGCGGAGCTTGTTGCTGCTGCGCGCGACCAGGCGAC
GGCAGAGCAGCCTTAAGCATCTTGGCAGAGCCGGGGAGAGGCAGCTGGACCTCGAACTGC
AGGGAAGAAAGCGGCTCTTTGTTCTCTGTGGGCCTGTGGCAGAAAGACACATCTCCTGTC
CCCAGCCGCACCTGCTGCAGCTCCCTCGGTGAATTTGGGTCTCCTTTCCCAAAAAACACA
AAAGCCTTTTTCCATTGTATGGAAGATAGTTTTTAAGACATTTGAAACTTTCTACCATAG
TTTACAGAGCAAAGTTATTTTATTTTTATTGTAAATCTTACTGTGGAAGAGTTGATTCCC
AAAATATGATTGAAGTAAATACACGTATGTATGAAT
|
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gi|61874612|ref|XP_589679.1| |
Protein identifier
|
gi|61874612|ref|XP_589679.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
135-334, gnl|bosTau2|chr28 (34811601-34811402) |
|
135-334, gnl|canFam2|chr4 (11708750-11708518) |
|
135-334, gnl|dasNov1|scaffold_116932 (9127-9354) |
|
135-334, gnl|echTel1|scaffold_315971 (44095-43860) |
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135-334, gnl|galGal2|chr3 (36615056-36615274) |
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135-334, gnl|hg17|chr1 (227129394-227129626) |
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135-334, gnl|Hg17|chr1 (227129414-227129613) |
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135-334, gnl|loxAfr1|scaffold_4961 (10833-10607) |
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135-334, gnl|mm7|chr8 (123132278-123132482) |
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135-334, gnl|Mm7|chr8 (123132298-123132473) |
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135-334, gnl|monDom2|scaffold_13 (59067542-59067776) |
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135-334, gnl|oryCun1|scaffold_198292 (223520-223290) |
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135-334, gnl|panTro1|chr1 (210977261-210977493) |
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135-334, gnl|rheMac2|chr1 (226280393-226280161) |
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135-334, gnl|rn3|chr19 (54735362-54735572) |
| |
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392-551, gnl|bosTau2|chr28 (34810293-34810135) |
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392-551, gnl|Hg17|chr1 (227130886-227131044) |
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392-551, gnl|Mm7|chr8 (123133701-123133865) |
| |
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872-1296, gnl|bosTau2|chr28 (34805397-34804967) |
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872-1296, gnl|Hg17|chr1 (227135770-227136219) |
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872-1296, gnl|Mm7|chr8 (123138559-123138929) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
135-334, gnl|bosTau2|chr28 (34811601-34811402) |
|
135-334, gnl|canFam2|chr4 (11708750-11708518) |
|
135-334, gnl|dasNov1|scaffold_116932 (9127-9354) |
|
135-334, gnl|echTel1|scaffold_315971 (44095-43860) |
|
135-334, gnl|galGal2|chr3 (36615056-36615274) |
|
135-334, gnl|hg17|chr1 (227129394-227129626) |
|
135-334, gnl|Hg17|chr1 (227129414-227129613) |
|
135-334, gnl|loxAfr1|scaffold_4961 (10833-10607) |
|
135-334, gnl|mm7|chr8 (123132278-123132482) |
|
135-334, gnl|Mm7|chr8 (123132298-123132473) |
|
135-334, gnl|monDom2|scaffold_13 (59067542-59067776) |
|
135-334, gnl|oryCun1|scaffold_198292 (223520-223290) |
|
135-334, gnl|panTro1|chr1 (210977261-210977493) |
|
135-334, gnl|rheMac2|chr1 (226280393-226280161) |
|
135-334, gnl|rn3|chr19 (54735362-54735572) |
| |
|
392-551, gnl|bosTau2|chr28 (34810293-34810135) |
|
392-551, gnl|Hg17|chr1 (227130886-227131044) |
|
392-551, gnl|Mm7|chr8 (123133701-123133865) |
| |
|
872-1296, gnl|bosTau2|chr28 (34805397-34804967) |
|
872-1296, gnl|Hg17|chr1 (227135770-227136219) |
|
872-1296, gnl|Mm7|chr8 (123138559-123138929) |
|
nms (0.213858) |
|
hyp (0.142837) |
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pgl (0.118483) |
|
nms (0.213858) |
|
hyp (0.142837) |
|
pgl (0.118483) |
