Ss1.1-Pig4-TMW8030F04.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCGCTGGGCAACTCAGGAAGAGAGCTCAACCCCTGCTGCGCCAAGATGGCTGGTCGGGCC GCCACTGGGCTCCTGCGCGCCTGTTTGCTTCCAGCGTGGGCGGAGCGCGAGGTCCTGGGC ACACCTCCCTGAAGAGCAAGTGAGCCCAGAAGTGGCCTTTCGGGAGGGCACTTCTGGAAG AGATAGGGAGGGAGAGAGTGGCGACCGACTTCCTGAATCGCTGGGCAACTCAGGAAGAGA GCTCAACCCCTGCTGCGCCAAGATGTCTGGAGGATCAGCCAGAAGCCTGGGGAAGGGAAG TGCGCCCCCGGGGCCGGTCCCCGAGGGCCTGATCCGTGTCTACAGCATGAGATTCTGTCC TTTCGCCCAGAGGACTCTCCTGGTCCTGAATGCCAAGGGAATCCGGCATCAAGTCATCAA CATCAACCTGAAAAATAAGCCTGAGTGGTTCTTCCAGAAGAATCCCTCAGGTCTGGTGCC AGTTCTGGAAAACAGTCAGGGTCAACTGATCTATGAATCTGCCATCACTTGTGAGTACCT GGATGAAGCATATCCAGGGAAGAAGCTGTTGCCAGATGACCCCTATGAGAAAGCTTGCCA AAAGATGGTCTTTGAGTTGTCTTCTAAGGTACCGCCTTTGCTAATACGCTTTATTAGAAG GGAAAATGAGGCAGACTGCTCTGGCCTAAAAGAAGAATTACGTAAAGAATTCAGCAAGCT AGAGGAGGTTCTGACCAAAAAGAAGACAACATACTTTGGTGGAAGTTCTCTTTCTATGAT TGATTACCTCATCTGGCCCTGGTTTGAAAGGCTGGAAGCCCTGGAGTTAAATGAGTGTAT AGACCACACTCCAAAACTTAAGCTCTGGATGGCAGCCATGATGAAAGATCCGGCGGTATC AGCCCTCCACATTGAACCGAGAGACCTTCGAGCTTTCAATGACCTCTACTTGCAGAACAG CCCAGAGGCCTGTGACTATGGGCTCTGATGGGGACAGGAGTCAGCAACTATGATGTACCT GATATTTTCCTTCCCTAAATATGAATAATAAACATGTGAAATAAAAACAAAAAAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCGCTGGGCAACTCAGGAAGAGAGCTCAACCCCTGCTGCGCCAAGATGGCTGGTCGGGCC GCCACTGGGCTCCTGCGCGCCTGTTTGCTTCCAGCGTGGGCGGAGCGCGAGGTCCTGGGC ACACCTCCCTGAAGAGCAAGTGAGCCCAGAAGTGGCCTTTCGGGAGGGCACTTCTGGAAG AGATAGGGAGGGAGAGAGTGGCGACCGACTTCCTGAATCGCTGGGCAACTCAGGAAGAGA GCTCAACCCCTGCTGCGCCAAGATGTCTGGAGGATCAGCCAGAAGCCTGGGGAAGGGAAG TGCGCCCCCGGGGCCGGTCCCCGAGGGCCTGATCCGTGTCTACAGCATGAGATTCTGTCC TTTCGCCCAGAGGACTCTCCTGGTCCTGAATGCCAAGGGAATCCGGCATCAAGTCATCAA CATCAACCTGAAAAATAAGCCTGAGTGGTTCTTCCAGAAGAATCCCTCAGGTCTGGTGCC AGTTCTGGAAAACAGTCAGGGTCAACTGATCTATGAATCTGCCATCACTTGTGAGTACCT GGATGAAGCATATCCAGGGAAGAAGCTGTTGCCAGATGACCCCTATGAGAAAGCTTGCCA AAAGATGGTCTTTGAGTTGTCTTCTAAGGTACCGCCTTTGCTAATACGCTTTATTAGAAG GGAAAATGAGGCAGACTGCTCTGGCCTAAAAGAAGAATTACGTAAAGAATTCAGCAAGCT AGAGGAGGTTCTGACCAAAAAGAAGACAACATACTTTGGTGGAAGTTCTCTTTCTATGAT TGATTACCTCATCTGGCCCTGGTTTGAAAGGCTGGAAGCCCTGGAGTTAAATGAGTGTAT AGACCACACTCCAAAACTTAAGCTCTGGATGGCAGCCATGATGAAAGATCCGGCGGTATC AGCCCTCCACATTGAACCGAGAGACCTTCGAGCTTTCAATGACCTCTACTTGCAGAACAG CCCAGAGGCCTGTGACTATGGGCTCTGATGGGGACAGGAGTCAGCAACTATGATGTACCT GATATTTTCCTTCCCTAAATATGAATAATAAACATGTGAAATAAAAACAAAAAAAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 402-520, + strand, RNAz p=0.839006 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 402-520, + strand, RNAz p=0.839006 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 402-630, gnl|bosTau2|chr26 (17085177-17084949) | |
| 402-630, gnl|canFam2|chr28 (19577408-19577637) | |
| 402-630, gnl|canFam2|chr28 (19577378-19577669) | |
| 402-630, gnl|danRer3|chr13 (26034585-26034357) | |
| 402-630, gnl|danRer3|chr13 (26050531-26050260) | |
| 402-630, gnl|dasNov1|scaffold_9222 (129772-129545) | |
| 402-630, gnl|dasNov1|scaffold_9222 (129788-129546) | |
| 402-630, gnl|echTel1|scaffold_262161 (8509-8280) | |
| 402-630, gnl|echTel1|scaffold_299526 (81282-81570) | |
| 402-630, gnl|fr1|chrUn (8945606-8945881) | |
| 402-630, gnl|fr1|chrUn (8945621-8945891) | |
| 402-630, gnl|galGal2|chr6 (23305858-23306087) | |
| 402-630, gnl|galGal2|chr6 (23305843-23306118) | |
| 402-630, gnl|hg17|chr10 (106009291-106009582) | |
| 402-630, gnl|Hg17|chr10 (106009320-106009548) | |
| 402-630, gnl|hg17|chr3 (132029343-132029572) | |
| 402-630, gnl|loxAfr1|scaffold_2043 (53064-53274) | |
| 402-630, gnl|loxAfr1|scaffold_2043 (53028-53297) | |
| 402-630, gnl|mm7|chr19 (47758353-47758577) | |
| 402-630, gnl|mm7|chr19 (47758326-47758611) | |
| 402-630, gnl|Mm7|chr19 (47758352-47758580) | |
| 402-630, gnl|monDom2|scaffold_14 (58848945-58848720) | |
| 402-630, gnl|monDom2|scaffold_14 (58848976-58848699) | |
| 402-630, gnl|oryCun1|scaffold_198587 (174127-173903) | |
| 402-630, gnl|oryCun1|scaffold_198587 (174159-173904) | |
| 402-630, gnl|panTro1|chr2 (134078756-134078985) | |
| 402-630, gnl|panTro1|chr8 (107811623-107811914) | |
| 402-630, gnl|rheMac2|chr9 (103964413-103964704) | |
| 402-630, gnl|rheMac2|chrX (77977594-77977823) | |
| 402-630, gnl|rn3|chr1 (253496178-253496402) | |
| 402-630, gnl|rn3|chr1 (253496151-253496437) | |
| 402-630, gnl|tetNig1|chr17 (6835420-6835138) | |
| 402-630, gnl|tetNig1|chr17 (6835372-6835133) | |
| 402-630, gnl|xenTro1|scaffold_892 (306412-306641) | |
| 402-630, gnl|xenTro1|scaffold_892 (306396-306643) | |
| 835-1050, gnl|bosTau2|chr26 (17104165-17103951) | |
| 835-1050, gnl|Hg17|chr10 (106017000-106017214) | |
| 835-1050, gnl|Mm7|chr19 (47764794-47764994) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 402-630, gnl|bosTau2|chr26 (17085177-17084949) | |
| 402-630, gnl|canFam2|chr28 (19577408-19577637) | |
| 402-630, gnl|canFam2|chr28 (19577378-19577669) | |
| 402-630, gnl|danRer3|chr13 (26034585-26034357) | |
| 402-630, gnl|danRer3|chr13 (26050531-26050260) | |
| 402-630, gnl|dasNov1|scaffold_9222 (129772-129545) | |
| 402-630, gnl|dasNov1|scaffold_9222 (129788-129546) | |
| 402-630, gnl|echTel1|scaffold_262161 (8509-8280) | |
| 402-630, gnl|echTel1|scaffold_299526 (81282-81570) | |
| 402-630, gnl|fr1|chrUn (8945606-8945881) | |
| 402-630, gnl|fr1|chrUn (8945621-8945891) | |
| 402-630, gnl|galGal2|chr6 (23305858-23306087) | |
| 402-630, gnl|galGal2|chr6 (23305843-23306118) | |
| 402-630, gnl|hg17|chr10 (106009291-106009582) | |
| 402-630, gnl|Hg17|chr10 (106009320-106009548) | |
| 402-630, gnl|hg17|chr3 (132029343-132029572) | |
| 402-630, gnl|loxAfr1|scaffold_2043 (53064-53274) | |
| 402-630, gnl|loxAfr1|scaffold_2043 (53028-53297) | |
| 402-630, gnl|mm7|chr19 (47758353-47758577) | |
| 402-630, gnl|mm7|chr19 (47758326-47758611) | |
| 402-630, gnl|Mm7|chr19 (47758352-47758580) | |
| 402-630, gnl|monDom2|scaffold_14 (58848945-58848720) | |
| 402-630, gnl|monDom2|scaffold_14 (58848976-58848699) | |
| 402-630, gnl|oryCun1|scaffold_198587 (174127-173903) | |
| 402-630, gnl|oryCun1|scaffold_198587 (174159-173904) | |
| 402-630, gnl|panTro1|chr2 (134078756-134078985) | |
| 402-630, gnl|panTro1|chr8 (107811623-107811914) | |
| 402-630, gnl|rheMac2|chr9 (103964413-103964704) | |
| 402-630, gnl|rheMac2|chrX (77977594-77977823) | |
| 402-630, gnl|rn3|chr1 (253496178-253496402) | |
| 402-630, gnl|rn3|chr1 (253496151-253496437) | |
| 402-630, gnl|tetNig1|chr17 (6835420-6835138) | |
| 402-630, gnl|tetNig1|chr17 (6835372-6835133) | |
| 402-630, gnl|xenTro1|scaffold_892 (306412-306641) | |
| 402-630, gnl|xenTro1|scaffold_892 (306396-306643) | |
| 835-1050, gnl|bosTau2|chr26 (17104165-17103951) | |
| 835-1050, gnl|Hg17|chr10 (106017000-106017214) | |
| 835-1050, gnl|Mm7|chr19 (47764794-47764994) |
| Expressed library(ies): 37 entry(ies) | More info |
| Expressed library(ies): 37 entry(ies) | Help | Less info |
| duo (1.55521) | |
| cje (1.32188) | |
| jej (1.08814) | |
| lun (1.05342) | |
| sin (1.04969) | |
| sug (0.891039) | |
| eli (0.759071) | |
| cli (0.611247) | |
| cag (0.604778) | |
| fli (0.405762) | |
| col (0.390016) | |
| lnt (0.284616) | |
| pla (0.267344) | |
| eep (0.245128) | |
| nbm (0.198649) | |
| nlu (0.191681) | |
| sag (0.182715) | |
| gul (0.177588) | |
| fbs (0.175346) | |
| rec (0.17307) | |
| mcp (0.170648) | |
| cut (0.169924) | |
| nje (0.16592) | |
| nco (0.161734) | |
| tbr (0.154178) | |
| bfe (0.149858) | |
| ski (0.146735) | |
| nca (0.136874) | |
| cov (0.132153) | |
| thg (0.126791) | |
| ese (0.126502) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| med (0.116252) | |
| eje (0.0988338) | |
| ldo (0.0970026) |
| Expressed library(ies): 37 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| duo (1.55521) | |
| cje (1.32188) | |
| jej (1.08814) | |
| lun (1.05342) | |
| sin (1.04969) | |
| sug (0.891039) | |
| eli (0.759071) | |
| cli (0.611247) | |
| cag (0.604778) | |
| fli (0.405762) | |
| col (0.390016) | |
| lnt (0.284616) | |
| pla (0.267344) | |
| eep (0.245128) | |
| nbm (0.198649) | |
| nlu (0.191681) | |
| sag (0.182715) | |
| gul (0.177588) | |
| fbs (0.175346) | |
| rec (0.17307) | |
| mcp (0.170648) | |
| cut (0.169924) | |
| nje (0.16592) | |
| nco (0.161734) | |
| tbr (0.154178) | |
| bfe (0.149858) | |
| ski (0.146735) | |
| nca (0.136874) | |
| cov (0.132153) | |
| thg (0.126791) | |
| ese (0.126502) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| med (0.116252) | |
| eje (0.0988338) | |
| ldo (0.0970026) |