Ss1.1-Pig4-TMW8030F16.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGTGCTGATGTGGCCCCCCCTTCCCCCGCCCCGTCCCGGGATGTCGGAAGAAACCCGACA GAGCAAATTGGCTGCGGCCAAGAAAAAGTTAAGGGAATATCAGCAGAAGCACAGCCCTGG TGTTCCTGCAGGAGCTAAGAAAAAAAGAAAGATCAAGAATGGCAGTAGGTTAAGGGAATA TCAGCAGAAGCACAGCCCTGGTGTTCCTGCAGGAGCTAAGAAAAAAAGAAAGATCAAGAA TGGCAGTAGCCCTGAGACAACCACTTCTGGGGATTGTCCCACACCTGAGGATGCACCCAA AGATAGTGCAGATCTTGTTACATCGTCTGCTGATGACACCGTGTCACCTGGCGGTGTCCT TTCCCCCTGTGCTAGTCCCCTCCGTGGCACTAGCATGGCAACAACTCAGAACCATGATGC TGAAAATGGTCCTGTTCCCATTGATGAAAACACATCTTTCTCATCCACCGAGAGCCTGCG ACAGCTATCTCAGCAGCTCAACGGTCTTGTGTCCGAGTCTTCACCTTATATCAATGGGGA GGGCCTAGCATCTCCTGCTAACATAAAGAAGCTGGAGAGCCGGTACCACGAACTATCACT AGCCCTGGACTCCAGCAATCTAACAAACAAACAACTCAGTAGCAAGATAGAGGAATTGAA ACAAGAGAACCAGGAAACTCTGGATCAGCCGGAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGTGCTGATGTGGCCCCCCCTTCCCCCGCCCCGTCCCGGGATGTCGGAAGAAACCCGACA GAGCAAATTGGCTGCGGCCAAGAAAAAGTTAAGGGAATATCAGCAGAAGCACAGCCCTGG TGTTCCTGCAGGAGCTAAGAAAAAAAGAAAGATCAAGAATGGCAGTAGGTTAAGGGAATA TCAGCAGAAGCACAGCCCTGGTGTTCCTGCAGGAGCTAAGAAAAAAAGAAAGATCAAGAA TGGCAGTAGCCCTGAGACAACCACTTCTGGGGATTGTCCCACACCTGAGGATGCACCCAA AGATAGTGCAGATCTTGTTACATCGTCTGCTGATGACACCGTGTCACCTGGCGGTGTCCT TTCCCCCTGTGCTAGTCCCCTCCGTGGCACTAGCATGGCAACAACTCAGAACCATGATGC TGAAAATGGTCCTGTTCCCATTGATGAAAACACATCTTTCTCATCCACCGAGAGCCTGCG ACAGCTATCTCAGCAGCTCAACGGTCTTGTGTCCGAGTCTTCACCTTATATCAATGGGGA GGGCCTAGCATCTCCTGCTAACATAAAGAAGCTGGAGAGCCGGTACCACGAACTATCACT AGCCCTGGACTCCAGCAATCTAACAAACAAACAACTCAGTAGCAAGATAGAGGAATTGAA ACAAGAGAACCAGGAAACTCTGGATCAGCCGGAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 176-293, - strand, RNAz p=0.513114 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 176-293, - strand, RNAz p=0.513114 |
| Aligned organism(s): 93 entry(ies) | More info |
| Aligned organism(s): 93 entry(ies) | Help | Less info |
| 169-293, gnl|bosTau2|chr11 (78165014-78164890) | |
| 169-293, gnl|canFam2|chr9 (58580525-58580676) | |
| 169-293, gnl|canFam2|chr9 (58580698-58580464) | |
| 169-293, gnl|canFam2|chr9 (58580698-58580478) | |
| 169-293, gnl|canFam2|chr9 (58580682-58580522) | |
| 169-293, gnl|canFam2|chr9 (58580489-58580682) | |
| 169-293, gnl|canFam2|chr9 (58580682-58580490) | |
| 169-293, gnl|canFam2|chr9 (58580686-58580502) | |
| 169-293, gnl|canFam2|chr9 (58580806-58580520) | |
| 169-293, gnl|dasNov1|scaffold_66194 (6042-5888) | |
| 169-293, gnl|dasNov1|scaffold_66194 (5866-6075) | |
| 169-293, gnl|dasNov1|scaffold_66194 (5866-6080) | |
| 169-293, gnl|dasNov1|scaffold_66194 (5882-6045) | |
| 169-293, gnl|dasNov1|scaffold_66194 (6074-5882) | |
| 169-293, gnl|dasNov1|scaffold_66194 (5882-6067) | |
| 169-293, gnl|dasNov1|scaffold_66194 (5878-6061) | |
| 169-293, gnl|dasNov1|scaffold_66194 (5714-6047) | |
| 169-293, gnl|echTel1|scaffold_306913 (987-757) | |
| 169-293, gnl|echTel1|scaffold_322938 (87314-87478) | |
| 169-293, gnl|echTel1|scaffold_322938 (87494-87267) | |
| 169-293, gnl|echTel1|scaffold_322938 (87484-87311) | |
| 169-293, gnl|echTel1|scaffold_322938 (87278-87484) | |
| 169-293, gnl|echTel1|scaffold_322938 (87484-87279) | |
| 169-293, gnl|echTel1|scaffold_322938 (87488-87291) | |
| 169-293, gnl|echTel1|scaffold_322938 (87657-87309) | |
| 169-293, gnl|fr1|chrUn (160341870-160342068) | |
| 169-293, gnl|galGal2|chr17 (5747474-5747617) | |
| 169-293, gnl|hg17|chr15 (19005018-19005249) | |
| 169-293, gnl|hg17|chr15_random (49175-49371) | |
| 169-293, gnl|hg17|chr16 (51954913-51955158) | |
| 169-293, gnl|hg17|chr19 (22499231-22499417) | |
| 169-293, gnl|hg17|chr5 (7357973-7358330) | |
| 169-293, gnl|hg17|chr7 (30337191-30337354) | |
| 169-293, gnl|hg17|chr9 (128115647-128115837) | |
| 169-293, gnl|Hg17|chr9 (128115806-128115682) | |
| 169-293, gnl|hg17|chrY (24654178-24654333) | |
| 169-293, gnl|loxAfr1|scaffold_167697 (4176-4019) | |
| 169-293, gnl|loxAfr1|scaffold_167697 (4003-4237) | |
| 169-293, gnl|loxAfr1|scaffold_167697 (4003-4223) | |
| 169-293, gnl|loxAfr1|scaffold_167697 (4013-4179) | |
| 169-293, gnl|loxAfr1|scaffold_167697 (4212-4013) | |
| 169-293, gnl|loxAfr1|scaffold_167697 (4013-4211) | |
| 169-293, gnl|loxAfr1|scaffold_167697 (4009-4199) | |
| 169-293, gnl|loxAfr1|scaffold_167697 (3851-4181) | |
| 169-293, gnl|mm7|chr2 (32299397-32299553) | |
| 169-293, gnl|mm7|chr2 (32299574-32299350) | |
| 169-293, gnl|mm7|chr2 (32299571-32299354) | |
| 169-293, gnl|mm7|chr2 (32299559-32299394) | |
| 169-293, gnl|mm7|chr2 (32299364-32299559) | |
| 169-293, gnl|mm7|chr2 (32299559-32299374) | |
| 169-293, gnl|mm7|chr2 (32299563-32299368) | |
| 169-293, gnl|mm7|chr2 (32299830-32299392) | |
| 169-293, gnl|Mm7|chr2 (32299403-32299527) | |
| 169-293, gnl|monDom2|scaffold_51 (2800218-2800060) | |
| 169-293, gnl|monDom2|scaffold_51 (2800039-2800263) | |
| 169-293, gnl|monDom2|scaffold_51 (2800039-2800263) | |
| 169-293, gnl|monDom2|scaffold_51 (2800054-2800220) | |
| 169-293, gnl|monDom2|scaffold_51 (2800257-2800054) | |
| 169-293, gnl|monDom2|scaffold_51 (2800054-2800243) | |
| 169-293, gnl|monDom2|scaffold_51 (2800054-2800243) | |
| 169-293, gnl|monDom2|scaffold_51 (2799902-2800225) | |
| 169-293, gnl|oryCun1|scaffold_175925 (176180-176337) | |
| 169-293, gnl|oryCun1|scaffold_175925 (176358-176132) | |
| 169-293, gnl|oryCun1|scaffold_175925 (176343-176177) | |
| 169-293, gnl|oryCun1|scaffold_175925 (176143-176343) | |
| 169-293, gnl|oryCun1|scaffold_175925 (176343-176144) | |
| 169-293, gnl|oryCun1|scaffold_175925 (176542-176175) | |
| 169-293, gnl|oryCun1|scaffold_207056 (37978-37742) | |
| 169-293, gnl|oryCun1|scaffold_209544 (50140-50321) | |
| 169-293, gnl|panTro1|chr11 (112949636-112949826) | |
| 169-293, gnl|panTro1|chr16 (60798048-60797892) | |
| 169-293, gnl|panTro1|chr16 (18872715-18872519) | |
| 169-293, gnl|panTro1|chr16_random (7150446-7150215) | |
| 169-293, gnl|panTro1|chr18 (45996543-45996788) | |
| 169-293, gnl|panTro1|chr20 (23454755-23454941) | |
| 169-293, gnl|panTro1|chr4_random (43856934-43857290) | |
| 169-293, gnl|panTro1|chr6 (31455304-31455467) | |
| 169-293, gnl|rheMac2|chr15 (10605278-10605080) | |
| 169-293, gnl|rheMac2|chr15 (10605282-10605092) | |
| 169-293, gnl|rheMac2|chr20 (51601002-51601247) | |
| 169-293, gnl|rheMac2|chr7 (79962040-79962194) | |
| 169-293, gnl|rheMac2|chr7 (2676337-2676568) | |
| 169-293, gnl|rheMac2|chr7 (81899235-81899396) | |
| 169-293, gnl|rheMac2|chr7 (2676557-2676352) | |
| 169-293, gnl|rheMac2|chr7 (2676183-2676526) | |
| 169-293, gnl|rn3|chr3 (11312803-11312959) | |
| 169-293, gnl|rn3|chr3 (11312980-11312756) | |
| 169-293, gnl|rn3|chr3 (11312977-11312760) | |
| 169-293, gnl|rn3|chr3 (11312965-11312800) | |
| 169-293, gnl|rn3|chr3 (11312770-11312965) | |
| 169-293, gnl|rn3|chr3 (11312965-11312780) | |
| 169-293, gnl|rn3|chr3 (11312969-11312774) | |
| 169-293, gnl|rn3|chr3 (11313223-11312798) |
| Aligned organism(s): 93 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 169-293, gnl|bosTau2|chr11 (78165014-78164890) | |
| 169-293, gnl|canFam2|chr9 (58580525-58580676) | |
| 169-293, gnl|canFam2|chr9 (58580698-58580464) | |
| 169-293, gnl|canFam2|chr9 (58580698-58580478) | |
| 169-293, gnl|canFam2|chr9 (58580682-58580522) | |
| 169-293, gnl|canFam2|chr9 (58580489-58580682) | |
| 169-293, gnl|canFam2|chr9 (58580682-58580490) | |
| 169-293, gnl|canFam2|chr9 (58580686-58580502) | |
| 169-293, gnl|canFam2|chr9 (58580806-58580520) | |
| 169-293, gnl|dasNov1|scaffold_66194 (6042-5888) | |
| 169-293, gnl|dasNov1|scaffold_66194 (5866-6075) | |
| 169-293, gnl|dasNov1|scaffold_66194 (5866-6080) | |
| 169-293, gnl|dasNov1|scaffold_66194 (5882-6045) | |
| 169-293, gnl|dasNov1|scaffold_66194 (6074-5882) | |
| 169-293, gnl|dasNov1|scaffold_66194 (5882-6067) | |
| 169-293, gnl|dasNov1|scaffold_66194 (5878-6061) | |
| 169-293, gnl|dasNov1|scaffold_66194 (5714-6047) | |
| 169-293, gnl|echTel1|scaffold_306913 (987-757) | |
| 169-293, gnl|echTel1|scaffold_322938 (87314-87478) | |
| 169-293, gnl|echTel1|scaffold_322938 (87494-87267) | |
| 169-293, gnl|echTel1|scaffold_322938 (87484-87311) | |
| 169-293, gnl|echTel1|scaffold_322938 (87278-87484) | |
| 169-293, gnl|echTel1|scaffold_322938 (87484-87279) | |
| 169-293, gnl|echTel1|scaffold_322938 (87488-87291) | |
| 169-293, gnl|echTel1|scaffold_322938 (87657-87309) | |
| 169-293, gnl|fr1|chrUn (160341870-160342068) | |
| 169-293, gnl|galGal2|chr17 (5747474-5747617) | |
| 169-293, gnl|hg17|chr15 (19005018-19005249) | |
| 169-293, gnl|hg17|chr15_random (49175-49371) | |
| 169-293, gnl|hg17|chr16 (51954913-51955158) | |
| 169-293, gnl|hg17|chr19 (22499231-22499417) | |
| 169-293, gnl|hg17|chr5 (7357973-7358330) | |
| 169-293, gnl|hg17|chr7 (30337191-30337354) | |
| 169-293, gnl|hg17|chr9 (128115647-128115837) | |
| 169-293, gnl|Hg17|chr9 (128115806-128115682) | |
| 169-293, gnl|hg17|chrY (24654178-24654333) | |
| 169-293, gnl|loxAfr1|scaffold_167697 (4176-4019) | |
| 169-293, gnl|loxAfr1|scaffold_167697 (4003-4237) | |
| 169-293, gnl|loxAfr1|scaffold_167697 (4003-4223) | |
| 169-293, gnl|loxAfr1|scaffold_167697 (4013-4179) | |
| 169-293, gnl|loxAfr1|scaffold_167697 (4212-4013) | |
| 169-293, gnl|loxAfr1|scaffold_167697 (4013-4211) | |
| 169-293, gnl|loxAfr1|scaffold_167697 (4009-4199) | |
| 169-293, gnl|loxAfr1|scaffold_167697 (3851-4181) | |
| 169-293, gnl|mm7|chr2 (32299397-32299553) | |
| 169-293, gnl|mm7|chr2 (32299574-32299350) | |
| 169-293, gnl|mm7|chr2 (32299571-32299354) | |
| 169-293, gnl|mm7|chr2 (32299559-32299394) | |
| 169-293, gnl|mm7|chr2 (32299364-32299559) | |
| 169-293, gnl|mm7|chr2 (32299559-32299374) | |
| 169-293, gnl|mm7|chr2 (32299563-32299368) | |
| 169-293, gnl|mm7|chr2 (32299830-32299392) | |
| 169-293, gnl|Mm7|chr2 (32299403-32299527) | |
| 169-293, gnl|monDom2|scaffold_51 (2800218-2800060) | |
| 169-293, gnl|monDom2|scaffold_51 (2800039-2800263) | |
| 169-293, gnl|monDom2|scaffold_51 (2800039-2800263) | |
| 169-293, gnl|monDom2|scaffold_51 (2800054-2800220) | |
| 169-293, gnl|monDom2|scaffold_51 (2800257-2800054) | |
| 169-293, gnl|monDom2|scaffold_51 (2800054-2800243) | |
| 169-293, gnl|monDom2|scaffold_51 (2800054-2800243) | |
| 169-293, gnl|monDom2|scaffold_51 (2799902-2800225) | |
| 169-293, gnl|oryCun1|scaffold_175925 (176180-176337) | |
| 169-293, gnl|oryCun1|scaffold_175925 (176358-176132) | |
| 169-293, gnl|oryCun1|scaffold_175925 (176343-176177) | |
| 169-293, gnl|oryCun1|scaffold_175925 (176143-176343) | |
| 169-293, gnl|oryCun1|scaffold_175925 (176343-176144) | |
| 169-293, gnl|oryCun1|scaffold_175925 (176542-176175) | |
| 169-293, gnl|oryCun1|scaffold_207056 (37978-37742) | |
| 169-293, gnl|oryCun1|scaffold_209544 (50140-50321) | |
| 169-293, gnl|panTro1|chr11 (112949636-112949826) | |
| 169-293, gnl|panTro1|chr16 (60798048-60797892) | |
| 169-293, gnl|panTro1|chr16 (18872715-18872519) | |
| 169-293, gnl|panTro1|chr16_random (7150446-7150215) | |
| 169-293, gnl|panTro1|chr18 (45996543-45996788) | |
| 169-293, gnl|panTro1|chr20 (23454755-23454941) | |
| 169-293, gnl|panTro1|chr4_random (43856934-43857290) | |
| 169-293, gnl|panTro1|chr6 (31455304-31455467) | |
| 169-293, gnl|rheMac2|chr15 (10605278-10605080) | |
| 169-293, gnl|rheMac2|chr15 (10605282-10605092) | |
| 169-293, gnl|rheMac2|chr20 (51601002-51601247) | |
| 169-293, gnl|rheMac2|chr7 (79962040-79962194) | |
| 169-293, gnl|rheMac2|chr7 (2676337-2676568) | |
| 169-293, gnl|rheMac2|chr7 (81899235-81899396) | |
| 169-293, gnl|rheMac2|chr7 (2676557-2676352) | |
| 169-293, gnl|rheMac2|chr7 (2676183-2676526) | |
| 169-293, gnl|rn3|chr3 (11312803-11312959) | |
| 169-293, gnl|rn3|chr3 (11312980-11312756) | |
| 169-293, gnl|rn3|chr3 (11312977-11312760) | |
| 169-293, gnl|rn3|chr3 (11312965-11312800) | |
| 169-293, gnl|rn3|chr3 (11312770-11312965) | |
| 169-293, gnl|rn3|chr3 (11312965-11312780) | |
| 169-293, gnl|rn3|chr3 (11312969-11312774) | |
| 169-293, gnl|rn3|chr3 (11313223-11312798) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cov (0.132153) | |
| bla (0.124347) | |
| pgl (0.118483) |