Non-Coding RNA Search

Ss1.1-Pig4-TMW8030G13.5

Sequence:


               
               TCGGCGCGCATCGGCGGGGCGCTGAGCGTGGCCTTGCCCGCGCTGCTCCTGCGCCGCCTG
CGGCGGGGGAGCCTGTCGGTTCGCTCGCTGCTGCCCGGGCCCCCGCTGCAGCCGCCCCCG
CCCGCCCCAGTGCTCCTGTACGACCAGGGCGGGGGCCGGCACAGGCGCGGGGAGGCAGAG
GCCGAAGCCGAGGAATGGGAGGCCGAGTCAGTGCTGGGGACCCTGCTCCAGAAGCTGCGA
GAGGAAGGCTACCTGGCGTACTACCTGCAGGGTGGCTTCAGCAGATTCCAGGCCGAATGC
CCTCACCTGTGTGAGACCAGCCTCAACAGCCGTGGGGGCCCCAGTGCAGCCCCGGTGCCC
AGCCCCGTGGTGGGGCTGGGTGGCCTGTGTCTGGGCTCCGACTGCTCCGATGGGGAATCT
GAGCCCGACCGCGACTCCATGAGCTGCGGCCTGGATTCGGAGGGCGCCACGCCCCCCCCA
GCAGGGCTGCTGCCGTCCTTCCCCGTCCAGATCCTGCCCAACCTGTACCTGGGCAGTGCC
CGGGATTCAGCCAATGTGGAGAGCTTGGCCAAGCTCGGCATCCGCTACATCCTCAACGTC
ACCCCCAACCTCCCGAACCTCTTCGAGAAGAATGGTGACTTTCACTACAAGCAGATCCCC
ATCTCGGACCACTGGAGCCAGAACCTGTCCCAGTTCTTTCCTGAGGCCATCGCCTTCATC
GACGAGGCCTTGTCCCAGAACTGCGGGGTGCTTGTTCACTGCCTGGCGGGCGTCAGCCGC
TCCGTCACCGTCACCGTGGCCTACCTCATGCAGAAGCTCCACCTCTCACTCAACGACGCC
TACGACCTGGTCAAGCGCAAGAAGTCCAACATCTCGCCCAACTTCAACTTCATGGGGCAG
CTGCTGGACTTCGAGCGCAGCCTGCGGCTGGAGGAGCGGCGCGCCCGGGCGCGGGGCAGC
GGGGGGCAGGAGTCGGCGGCGTCCGACCCGCCCTCCTTCTTCACCACCCCTACCAGCGAC
GGCGTCTTCGAGCTGGACGCCACCTAGGGCGCCCCCCGGGCCGCCCCCCCAGCGGGGGCT
CCGAGCCACCCGCGCGCTGGGGAGGGGGCAGGAGGGGGCGCCGCCTGGGGGGGTGGGGGT
GGGGGGAGCGCAATACCTCATGGGGGGGCCGTGGGACGAGGCAGGAGCGGGAGCCCCTCA
AGGCTGGTCGTGGGGAGAGAAACACCCTATTAAACGTGCCTATGCGCCGGGCCTGGGGCC
ACCGGCCCGACCCGCGCCGCTTTTGGGCGGAACCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCGGCGCGCATCGGCGGGGCGCTGAGCGTGGCCTTGCCCGCGCTGCTCCTGCGCCGCCTG
CGGCGGGGGAGCCTGTCGGTTCGCTCGCTGCTGCCCGGGCCCCCGCTGCAGCCGCCCCCG
CCCGCCCCAGTGCTCCTGTACGACCAGGGCGGGGGCCGGCACAGGCGCGGGGAGGCAGAG
GCCGAAGCCGAGGAATGGGAGGCCGAGTCAGTGCTGGGGACCCTGCTCCAGAAGCTGCGA
GAGGAAGGCTACCTGGCGTACTACCTGCAGGGTGGCTTCAGCAGATTCCAGGCCGAATGC
CCTCACCTGTGTGAGACCAGCCTCAACAGCCGTGGGGGCCCCAGTGCAGCCCCGGTGCCC
AGCCCCGTGGTGGGGCTGGGTGGCCTGTGTCTGGGCTCCGACTGCTCCGATGGGGAATCT
GAGCCCGACCGCGACTCCATGAGCTGCGGCCTGGATTCGGAGGGCGCCACGCCCCCCCCA
GCAGGGCTGCTGCCGTCCTTCCCCGTCCAGATCCTGCCCAACCTGTACCTGGGCAGTGCC
CGGGATTCAGCCAATGTGGAGAGCTTGGCCAAGCTCGGCATCCGCTACATCCTCAACGTC
ACCCCCAACCTCCCGAACCTCTTCGAGAAGAATGGTGACTTTCACTACAAGCAGATCCCC
ATCTCGGACCACTGGAGCCAGAACCTGTCCCAGTTCTTTCCTGAGGCCATCGCCTTCATC
GACGAGGCCTTGTCCCAGAACTGCGGGGTGCTTGTTCACTGCCTGGCGGGCGTCAGCCGC
TCCGTCACCGTCACCGTGGCCTACCTCATGCAGAAGCTCCACCTCTCACTCAACGACGCC
TACGACCTGGTCAAGCGCAAGAAGTCCAACATCTCGCCCAACTTCAACTTCATGGGGCAG
CTGCTGGACTTCGAGCGCAGCCTGCGGCTGGAGGAGCGGCGCGCCCGGGCGCGGGGCAGC
GGGGGGCAGGAGTCGGCGGCGTCCGACCCGCCCTCCTTCTTCACCACCCCTACCAGCGAC
GGCGTCTTCGAGCTGGACGCCACCTAGGGCGCCCCCCGGGCCGCCCCCCCAGCGGGGGCT
CCGAGCCACCCGCGCGCTGGGGAGGGGGCAGGAGGGGGCGCCGCCTGGGGGGGTGGGGGT
GGGGGGAGCGCAATACCTCATGGGGGGGCCGTGGGACGAGGCAGGAGCGGGAGCCCCTCA
AGGCTGGTCGTGGGGAGAGAAACACCCTATTAAACGTGCCTATGCGCCGGGCCTGGGGCC
ACCGGCCCGACCCGCGCCGCTTTTGGGCGGAACCCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               DUS9_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               DUS9_HUMAN

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               271-719, gnl|bosTau2|chr22 (36618345-36617912)
               

               
               271-719, gnl|Hg17|chr3 (52063431-52062998)
               

               
               271-719, gnl|Mm7|chr9 (106100148-106100581)
               


               
               721-937, gnl|bosTau2|chr22 (36615259-36615044)
               

               
               721-937, gnl|Hg17|chr3 (52060179-52059964)
               

               
               721-937, gnl|Mm7|chr9 (106103086-106103301)
               


               
               746-920, gnl|bosTau2|chr20 (3118923-3118748)
               

               
               746-920, gnl|Hg17|chr5 (172128717-172128542)
               

               
               746-920, gnl|Mm7|chr17 (24691173-24690998)
               


               
               748-915, gnl|bosTau2|chr11 (1784595-1784762)
               

               
               748-915, gnl|Hg17|chr2 (96231624-96231457)
               

               
               748-915, gnl|Mm7|chr2 (127078460-127078627)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               271-719, gnl|bosTau2|chr22 (36618345-36617912)
               

               
               271-719, gnl|Hg17|chr3 (52063431-52062998)
               

               
               271-719, gnl|Mm7|chr9 (106100148-106100581)
               


               
               721-937, gnl|bosTau2|chr22 (36615259-36615044)
               

               
               721-937, gnl|Hg17|chr3 (52060179-52059964)
               

               
               721-937, gnl|Mm7|chr9 (106103086-106103301)
               


               
               746-920, gnl|bosTau2|chr20 (3118923-3118748)
               

               
               746-920, gnl|Hg17|chr5 (172128717-172128542)
               

               
               746-920, gnl|Mm7|chr17 (24691173-24690998)
               


               
               748-915, gnl|bosTau2|chr11 (1784595-1784762)
               

               
               748-915, gnl|Hg17|chr2 (96231624-96231457)
               

               
               748-915, gnl|Mm7|chr2 (127078460-127078627)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fli (0.202881)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fli (0.202881)

	271-719, gnl\|bosTau2\|chr22 (36618345-36617912)
	271-719, gnl\|Hg17\|chr3 (52063431-52062998)
	271-719, gnl\|Mm7\|chr9 (106100148-106100581)

	721-937, gnl\|bosTau2\|chr22 (36615259-36615044)
	721-937, gnl\|Hg17\|chr3 (52060179-52059964)
	721-937, gnl\|Mm7\|chr9 (106103086-106103301)

	746-920, gnl\|bosTau2\|chr20 (3118923-3118748)
	746-920, gnl\|Hg17\|chr5 (172128717-172128542)
	746-920, gnl\|Mm7\|chr17 (24691173-24690998)

	748-915, gnl\|bosTau2\|chr11 (1784595-1784762)
	748-915, gnl\|Hg17\|chr2 (96231624-96231457)
	748-915, gnl\|Mm7\|chr2 (127078460-127078627)