Ss1.1-Pig4-TMW8030G14.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGGATTGGAGAAAAACGATCCCTTAAAGTTCTGGCTTTCTTCGATCCATGTATCTGGGCC GGTTCCAAGAAGATATCTTAAAGGAACAGGAATAAAAAGATGGATAGCAGCGTTACGAGT TTCGGTGTGGGTGGCGAGCATAGGAAAAGACAAAGCTTGAGCTTGGCTGTCTCGAGTCCC CTAGTTGTTTTTGGTCAGGCGGCGCCGCGGACACCTTTGCTCCGCGGTGATTGGCTCGCG GCGGGGGCCTCGTGTTTGTCCAATATGGCGGCGCCCAGTGGCAGTGTGAACTGTGAGGAG TTCGCCGAGTTCCAGGAATTACTCAAGGTGATGAGGACGATCGATGACAGAATAGTACAT GAATTAAACACTACGGTTCCAACAGCTTCCTTTGCAGGGAAAATCGATGCCAGCCAAACC TGTAAACAACTTTATGAGTCTTTGATGGAGGCTCATGCCAGTAGAGACAGAGTCATAAAA AACTGTATAGCTCAGACCTCAGCAGTAGTCAAACAACTTCGAGAAGAGAGAGAAAAGAAT TTGGATGATTTAACGTTATTAAAGCAACTTAGAAAAGAACAGACAAAGTTGAAATGGATG CAGTCAGAACTGAATGTAGAAGAAGTGGTAAATGACAGGAGCTGGAAGGTATTTAATGAA CGCTGCCGAATTCACTTCAAGCCTCCAAAGAACGAATAAAAAGATACTGTTTTTAGAAAA GGACCGGGTCATCTCATGAAAGCTGAGCATGACAGACATCAACACGGTGGTCTTCCTAGG AAGATTTCTGAGCCAAACGTCCAAGACCTTTTATTGATTTCAGCCCCACCTAGCCAAGAG CTCCAAGTATAAACGATTCTGATAATTACGGAGAAATCAACTGCTATTTTATACTGATTC TGTACAAAAAAAAAAAGATGTTTTGTAACTATTAAAATAATTTTCTGACTCAGTGTAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGGATTGGAGAAAAACGATCCCTTAAAGTTCTGGCTTTCTTCGATCCATGTATCTGGGCC GGTTCCAAGAAGATATCTTAAAGGAACAGGAATAAAAAGATGGATAGCAGCGTTACGAGT TTCGGTGTGGGTGGCGAGCATAGGAAAAGACAAAGCTTGAGCTTGGCTGTCTCGAGTCCC CTAGTTGTTTTTGGTCAGGCGGCGCCGCGGACACCTTTGCTCCGCGGTGATTGGCTCGCG GCGGGGGCCTCGTGTTTGTCCAATATGGCGGCGCCCAGTGGCAGTGTGAACTGTGAGGAG TTCGCCGAGTTCCAGGAATTACTCAAGGTGATGAGGACGATCGATGACAGAATAGTACAT GAATTAAACACTACGGTTCCAACAGCTTCCTTTGCAGGGAAAATCGATGCCAGCCAAACC TGTAAACAACTTTATGAGTCTTTGATGGAGGCTCATGCCAGTAGAGACAGAGTCATAAAA AACTGTATAGCTCAGACCTCAGCAGTAGTCAAACAACTTCGAGAAGAGAGAGAAAAGAAT TTGGATGATTTAACGTTATTAAAGCAACTTAGAAAAGAACAGACAAAGTTGAAATGGATG CAGTCAGAACTGAATGTAGAAGAAGTGGTAAATGACAGGAGCTGGAAGGTATTTAATGAA CGCTGCCGAATTCACTTCAAGCCTCCAAAGAACGAATAAAAAGATACTGTTTTTAGAAAA GGACCGGGTCATCTCATGAAAGCTGAGCATGACAGACATCAACACGGTGGTCTTCCTAGG AAGATTTCTGAGCCAAACGTCCAAGACCTTTTATTGATTTCAGCCCCACCTAGCCAAGAG CTCCAAGTATAAACGATTCTGATAATTACGGAGAAATCAACTGCTATTTTATACTGATTC TGTACAAAAAAAAAAAGATGTTTTGTAACTATTAAAATAATTTTCTGACTCAGTGTAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 46 entry(ies) | More info |
| Aligned organism(s): 46 entry(ies) | Help | Less info |
| 1-316, gnl|bosTau2|chr1 (34758745-34758426) | |
| 1-316, gnl|Hg17|chr3 (123585018-123584710) | |
| 442-599, gnl|bosTau2|chr1 (34746467-34746310) | |
| 442-599, gnl|canFam2|chr33 (28549089-28549239) | |
| 442-599, gnl|canFam2|chr33 (28549093-28549237) | |
| 442-599, gnl|canFam2|chr33 (28549093-28549239) | |
| 442-599, gnl|danRer3|chr24 (17884704-17884844) | |
| 442-599, gnl|dasNov1|scaffold_114874 (1621-1767) | |
| 442-599, gnl|dasNov1|scaffold_114874 (1625-1765) | |
| 442-599, gnl|dasNov1|scaffold_114874 (1625-1767) | |
| 442-599, gnl|echTel1|scaffold_210501 (7941-8089) | |
| 442-599, gnl|echTel1|scaffold_210501 (7945-8087) | |
| 442-599, gnl|echTel1|scaffold_235688 (7931-7793) | |
| 442-599, gnl|fr1|chrUn (122743429-122743215) | |
| 442-599, gnl|fr1|chrUn (122743426-122743281) | |
| 442-599, gnl|fr1|chrUn (122743425-122743279) | |
| 442-599, gnl|hg17|chr10 (52392866-52393013) | |
| 442-599, gnl|hg17|chr18 (10613981-10614125) | |
| 442-599, gnl|hg17|chr3 (42817445-42817595) | |
| 442-599, gnl|Hg17|chr3 (123569859-123569702) | |
| 442-599, gnl|loxAfr1|scaffold_27081 (30135-29961) | |
| 442-599, gnl|loxAfr1|scaffold_27081 (30131-29963) | |
| 442-599, gnl|loxAfr1|scaffold_27081 (30131-29961) | |
| 442-599, gnl|mm7|chr14 (113358299-113358151) | |
| 442-599, gnl|mm7|chr14 (113358295-113358153) | |
| 442-599, gnl|mm7|chr14 (113358295-113358151) | |
| 442-599, gnl|monDom2|scaffold_22 (8322085-8321935) | |
| 442-599, gnl|monDom2|scaffold_22 (8322081-8321937) | |
| 442-599, gnl|monDom2|scaffold_22 (8322081-8321935) | |
| 442-599, gnl|oryCun1|scaffold_66081 (3019-3166) | |
| 442-599, gnl|oryCun1|scaffold_66081 (3023-3164) | |
| 442-599, gnl|oryCun1|scaffold_66081 (3023-3166) | |
| 442-599, gnl|panTro1|chr17 (2048564-2048420) | |
| 442-599, gnl|panTro1|chr2 (44020265-44020415) | |
| 442-599, gnl|panTro1|chr8 (53272934-53273081) | |
| 442-599, gnl|rheMac2|chr2 (93774316-93774165) | |
| 442-599, gnl|rheMac2|chr2 (93774312-93774167) | |
| 442-599, gnl|rheMac2|chr9 (86329761-86329614) | |
| 442-599, gnl|rn3|chr14 (87223409-87223263) | |
| 442-599, gnl|rn3|chr14 (87223405-87223265) | |
| 442-599, gnl|rn3|chr14 (87223405-87223263) | |
| 442-599, gnl|tetNig1|chr6 (3023045-3023190) | |
| 442-599, gnl|tetNig1|chr6 (3023046-3023192) | |
| 647-957, gnl|bosTau2|chr1 (34737953-34737646) | |
| 647-957, gnl|Hg17|chr3 (123561458-123561128) | |
| 647-957, gnl|Mm7|chr16 (35769763-35770051) |
| Aligned organism(s): 46 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-316, gnl|bosTau2|chr1 (34758745-34758426) | |
| 1-316, gnl|Hg17|chr3 (123585018-123584710) | |
| 442-599, gnl|bosTau2|chr1 (34746467-34746310) | |
| 442-599, gnl|canFam2|chr33 (28549089-28549239) | |
| 442-599, gnl|canFam2|chr33 (28549093-28549237) | |
| 442-599, gnl|canFam2|chr33 (28549093-28549239) | |
| 442-599, gnl|danRer3|chr24 (17884704-17884844) | |
| 442-599, gnl|dasNov1|scaffold_114874 (1621-1767) | |
| 442-599, gnl|dasNov1|scaffold_114874 (1625-1765) | |
| 442-599, gnl|dasNov1|scaffold_114874 (1625-1767) | |
| 442-599, gnl|echTel1|scaffold_210501 (7941-8089) | |
| 442-599, gnl|echTel1|scaffold_210501 (7945-8087) | |
| 442-599, gnl|echTel1|scaffold_235688 (7931-7793) | |
| 442-599, gnl|fr1|chrUn (122743429-122743215) | |
| 442-599, gnl|fr1|chrUn (122743426-122743281) | |
| 442-599, gnl|fr1|chrUn (122743425-122743279) | |
| 442-599, gnl|hg17|chr10 (52392866-52393013) | |
| 442-599, gnl|hg17|chr18 (10613981-10614125) | |
| 442-599, gnl|hg17|chr3 (42817445-42817595) | |
| 442-599, gnl|Hg17|chr3 (123569859-123569702) | |
| 442-599, gnl|loxAfr1|scaffold_27081 (30135-29961) | |
| 442-599, gnl|loxAfr1|scaffold_27081 (30131-29963) | |
| 442-599, gnl|loxAfr1|scaffold_27081 (30131-29961) | |
| 442-599, gnl|mm7|chr14 (113358299-113358151) | |
| 442-599, gnl|mm7|chr14 (113358295-113358153) | |
| 442-599, gnl|mm7|chr14 (113358295-113358151) | |
| 442-599, gnl|monDom2|scaffold_22 (8322085-8321935) | |
| 442-599, gnl|monDom2|scaffold_22 (8322081-8321937) | |
| 442-599, gnl|monDom2|scaffold_22 (8322081-8321935) | |
| 442-599, gnl|oryCun1|scaffold_66081 (3019-3166) | |
| 442-599, gnl|oryCun1|scaffold_66081 (3023-3164) | |
| 442-599, gnl|oryCun1|scaffold_66081 (3023-3166) | |
| 442-599, gnl|panTro1|chr17 (2048564-2048420) | |
| 442-599, gnl|panTro1|chr2 (44020265-44020415) | |
| 442-599, gnl|panTro1|chr8 (53272934-53273081) | |
| 442-599, gnl|rheMac2|chr2 (93774316-93774165) | |
| 442-599, gnl|rheMac2|chr2 (93774312-93774167) | |
| 442-599, gnl|rheMac2|chr9 (86329761-86329614) | |
| 442-599, gnl|rn3|chr14 (87223409-87223263) | |
| 442-599, gnl|rn3|chr14 (87223405-87223265) | |
| 442-599, gnl|rn3|chr14 (87223405-87223263) | |
| 442-599, gnl|tetNig1|chr6 (3023045-3023190) | |
| 442-599, gnl|tetNig1|chr6 (3023046-3023192) | |
| 647-957, gnl|bosTau2|chr1 (34737953-34737646) | |
| 647-957, gnl|Hg17|chr3 (123561458-123561128) | |
| 647-957, gnl|Mm7|chr16 (35769763-35770051) |
| Expressed library(ies): 25 entry(ies) | More info |
| Expressed library(ies): 25 entry(ies) | Help | Less info |
| isp (0.75188) | |
| lin (0.582411) | |
| sme (0.305437) | |
| lun (0.300978) | |
| bfe (0.299715) | |
| ski (0.29347) | |
| cte (0.29274) | |
| ldo (0.291008) | |
| ssp (0.271039) | |
| ste (0.270416) | |
| ova (0.258264) | |
| med (0.232504) | |
| mgp (0.230681) | |
| col (0.195008) | |
| mgm (0.180343) | |
| sto (0.179824) | |
| fat (0.147427) | |
| liv (0.146284) | |
| csk (0.140746) | |
| cst (0.140036) | |
| pla (0.133672) | |
| kid (0.129735) | |
| bla (0.124347) | |
| spc (0.113366) | |
| jej (0.0989218) |
| Expressed library(ies): 25 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| isp (0.75188) | |
| lin (0.582411) | |
| sme (0.305437) | |
| lun (0.300978) | |
| bfe (0.299715) | |
| ski (0.29347) | |
| cte (0.29274) | |
| ldo (0.291008) | |
| ssp (0.271039) | |
| ste (0.270416) | |
| ova (0.258264) | |
| med (0.232504) | |
| mgp (0.230681) | |
| col (0.195008) | |
| mgm (0.180343) | |
| sto (0.179824) | |
| fat (0.147427) | |
| liv (0.146284) | |
| csk (0.140746) | |
| cst (0.140036) | |
| pla (0.133672) | |
| kid (0.129735) | |
| bla (0.124347) | |
| spc (0.113366) | |
| jej (0.0989218) |