Ss1.1-Pig4-TMW8030G16.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAAATACGTTCCCTCCTTCTCTGGATACAGCCAGCAGGATGCCCAAGAGTTTCTGAAGCT CCTCATGGAGCGGCTACACCTAGAAATCAACCGACGAGGCCGCCGGGCTCCACCAATCCT GGCCAGTAGTCCAGCTCCCTCCCCACCCCGCCGAGGAGGGGCGCTGCTGGAAGAACCTGA GTTAAGTGATGATGACCGAGCCAACCTAATGTGGAAGCGTTACCTGGAGCGAGAGGACAG CAAGATTGTGGACCTGTTTGTGGGCCAGTTGAAAAGTTGTCTCAAGTGCCAGGCCTGTGG GTATCGCTCCACGACCTTCGAGGTTTTTTGTGACCTGTCCCTGCCCATCCCCAAGAAAGG ATTTGCTGGGGGCAAGGTGTCTCTGCGGGATTGTTTCAGCCTTTTCACCAAGGAAGAAGA GCTAGAATCGGAGAATGCCCCAGTGTGTGACCGATGTCGGCAGAAAACACGAAGTACTAA AAAGTTGACAGTACAAAGATTCCCCCGAATCCTCGTGCTCCATCTTAATCGATTTTCTGC CTCCCGAGGCTCCATTAAGAAAAGTTCAGTAGGTGTAGACTTCCCACTGCAGCGACTGAG CCTAGGGGACTTTGCCAGTGACAAAGCCGGAAGCCCCATATATCAGCTGTATGCCCTTTG CAACCACTCGGGCAGCGTCCACTATGGCCACTACACAGCCCTGTGCCGGTGCCAGACTGG TTGGCATGTCTACAATGACTCTCGTGTCTCCCCTGTCAGTGAAAACCAGGTGGCATCCAG TGAGGGCTACGTGCTGTTCTACCAACTGATGCAGGAGCCACCCCGGTGCCTGTGACCTCC CTTTTAATCCCTGGCACCTGTGAAATCCTTTCAACACCCTTAAGCCCCAGGCTCCCCATT TACCTCAGAGACGTCTATTTTTGTGTCTTTTTAATCGGGGAGGGGGGAGGGGGTGGTTGT ACCTCCTATTATTTTTTTTATTAAAAAGTACCCTTCCACCTGGAGGCTCCCTTGTCTCCC AGCCCCATGTACAGAGCTCCCTAGGCCCTGCCCGTGTACAGTCCCCACACCCTCTGCAGT CTCACTTTTTTGTGAATAAATTTA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAAATACGTTCCCTCCTTCTCTGGATACAGCCAGCAGGATGCCCAAGAGTTTCTGAAGCT CCTCATGGAGCGGCTACACCTAGAAATCAACCGACGAGGCCGCCGGGCTCCACCAATCCT GGCCAGTAGTCCAGCTCCCTCCCCACCCCGCCGAGGAGGGGCGCTGCTGGAAGAACCTGA GTTAAGTGATGATGACCGAGCCAACCTAATGTGGAAGCGTTACCTGGAGCGAGAGGACAG CAAGATTGTGGACCTGTTTGTGGGCCAGTTGAAAAGTTGTCTCAAGTGCCAGGCCTGTGG GTATCGCTCCACGACCTTCGAGGTTTTTTGTGACCTGTCCCTGCCCATCCCCAAGAAAGG ATTTGCTGGGGGCAAGGTGTCTCTGCGGGATTGTTTCAGCCTTTTCACCAAGGAAGAAGA GCTAGAATCGGAGAATGCCCCAGTGTGTGACCGATGTCGGCAGAAAACACGAAGTACTAA AAAGTTGACAGTACAAAGATTCCCCCGAATCCTCGTGCTCCATCTTAATCGATTTTCTGC CTCCCGAGGCTCCATTAAGAAAAGTTCAGTAGGTGTAGACTTCCCACTGCAGCGACTGAG CCTAGGGGACTTTGCCAGTGACAAAGCCGGAAGCCCCATATATCAGCTGTATGCCCTTTG CAACCACTCGGGCAGCGTCCACTATGGCCACTACACAGCCCTGTGCCGGTGCCAGACTGG TTGGCATGTCTACAATGACTCTCGTGTCTCCCCTGTCAGTGAAAACCAGGTGGCATCCAG TGAGGGCTACGTGCTGTTCTACCAACTGATGCAGGAGCCACCCCGGTGCCTGTGACCTCC CTTTTAATCCCTGGCACCTGTGAAATCCTTTCAACACCCTTAAGCCCCAGGCTCCCCATT TACCTCAGAGACGTCTATTTTTGTGTCTTTTTAATCGGGGAGGGGGGAGGGGGTGGTTGT ACCTCCTATTATTTTTTTTATTAAAAAGTACCCTTCCACCTGGAGGCTCCCTTGTCTCCC AGCCCCATGTACAGAGCTCCCTAGGCCCTGCCCGTGTACAGTCCCCACACCCTCTGCAGT CTCACTTTTTTGTGAATAAATTTA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 13-131, + strand, RNAz p=0.734381 | |
| 780-1056, - strand, RNAz p=0.976912 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 13-131, + strand, RNAz p=0.734381 | |
| 780-1056, - strand, RNAz p=0.976912 |
| Aligned organism(s): 56 entry(ies) | More info |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
| 13-186, gnl|bosTau2|chr3 (7630144-7629971) | |
| 13-186, gnl|Hg17|chr1 (157945764-157945937) | |
| 13-186, gnl|Mm7|chr1 (171254845-171254671) | |
| 251-363, gnl|bosTau2|chr3 (7629097-7628985) | |
| 251-363, gnl|canFam2|chr17 (50262066-50261966) | |
| 251-363, gnl|canFam2|chr38 (24313604-24313461) | |
| 251-363, gnl|danRer3|chr23 (21501829-21501963) | |
| 251-363, gnl|dasNov1|scaffold_127434 (4986-5087) | |
| 251-363, gnl|dasNov1|scaffold_16381 (10267-10410) | |
| 251-363, gnl|echTel1|scaffold_232516 (12726-12806) | |
| 251-363, gnl|echTel1|scaffold_311345 (107391-107248) | |
| 251-363, gnl|hg17|chr1 (157946717-157946860) | |
| 251-363, gnl|Hg17|chr1 (157946740-157946852) | |
| 251-363, gnl|hg17|chr2 (76399996-76400099) | |
| 251-363, gnl|loxAfr1|scaffold_44457 (70-175) | |
| 251-363, gnl|loxAfr1|scaffold_53707 (4581-4619) | |
| 251-363, gnl|mm7|chr1 (171253856-171253717) | |
| 251-363, gnl|mm7|chr1 (171253732-171253833) | |
| 251-363, gnl|Mm7|chr1 (171253835-171253723) | |
| 251-363, gnl|monDom2|scaffold_0 (28661120-28660992) | |
| 251-363, gnl|oryCun1|scaffold_138045 (10512-10416) | |
| 251-363, gnl|oryCun1|scaffold_197393 (40955-41082) | |
| 251-363, gnl|panTro1|chr1 (140014303-140014446) | |
| 251-363, gnl|panTro1|chr12 (78970643-78970746) | |
| 251-363, gnl|rheMac2|chr1 (139772716-139772859) | |
| 251-363, gnl|rheMac2|chr13 (76601151-76601254) | |
| 251-363, gnl|rn3|chr8 (47083162-47083287) | |
| 251-363, gnl|tetNig1|chr9 (4849073-4849193) | |
| 522-630, gnl|bosTau2|chr3 (7628134-7628026) | |
| 522-630, gnl|canFam2|chr17 (50262338-50262232) | |
| 522-630, gnl|canFam2|chr38 (24312537-24312330) | |
| 522-630, gnl|danRer3|chr23 (21503802-21504014) | |
| 522-630, gnl|dasNov1|scaffold_127434 (4715-4818) | |
| 522-630, gnl|dasNov1|scaffold_16381 (11236-11444) | |
| 522-630, gnl|echTel1|scaffold_259711 (15295-15394) | |
| 522-630, gnl|echTel1|scaffold_311345 (106186-105979) | |
| 522-630, gnl|hg17|chr1 (157947677-157947885) | |
| 522-630, gnl|Hg17|chr1 (157947698-157947806) | |
| 522-630, gnl|hg17|chr2 (76399730-76399825) | |
| 522-630, gnl|loxAfr1|scaffold_44457 (343-447) | |
| 522-630, gnl|loxAfr1|scaffold_53707 (4304-4407) | |
| 522-630, gnl|mm7|chr1 (171252918-171252713) | |
| 522-630, gnl|mm7|chr1 (171252791-171252876) | |
| 522-630, gnl|Mm7|chr1 (171252895-171252787) | |
| 522-630, gnl|monDom2|scaffold_0 (28660053-28659839) | |
| 522-630, gnl|oryCun1|scaffold_138045 (10748-10670) | |
| 522-630, gnl|oryCun1|scaffold_208402 (48385-48184) | |
| 522-630, gnl|panTro1|chr1 (140015263-140015471) | |
| 522-630, gnl|panTro1|chr12 (78970374-78970469) | |
| 522-630, gnl|rheMac2|chr1 (139773685-139773893) | |
| 522-630, gnl|rheMac2|chr13 (76600885-76600980) | |
| 522-630, gnl|rn3|chr13 (87365412-87365204) | |
| 522-630, gnl|rn3|chr13 (87365285-87365370) | |
| 741-1104, gnl|bosTau2|chr3 (7627601-7627235) | |
| 741-1104, gnl|Hg17|chr1 (157948216-157948575) | |
| 741-1104, gnl|Mm7|chr1 (171252399-171252053) |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 13-186, gnl|bosTau2|chr3 (7630144-7629971) | |
| 13-186, gnl|Hg17|chr1 (157945764-157945937) | |
| 13-186, gnl|Mm7|chr1 (171254845-171254671) | |
| 251-363, gnl|bosTau2|chr3 (7629097-7628985) | |
| 251-363, gnl|canFam2|chr17 (50262066-50261966) | |
| 251-363, gnl|canFam2|chr38 (24313604-24313461) | |
| 251-363, gnl|danRer3|chr23 (21501829-21501963) | |
| 251-363, gnl|dasNov1|scaffold_127434 (4986-5087) | |
| 251-363, gnl|dasNov1|scaffold_16381 (10267-10410) | |
| 251-363, gnl|echTel1|scaffold_232516 (12726-12806) | |
| 251-363, gnl|echTel1|scaffold_311345 (107391-107248) | |
| 251-363, gnl|hg17|chr1 (157946717-157946860) | |
| 251-363, gnl|Hg17|chr1 (157946740-157946852) | |
| 251-363, gnl|hg17|chr2 (76399996-76400099) | |
| 251-363, gnl|loxAfr1|scaffold_44457 (70-175) | |
| 251-363, gnl|loxAfr1|scaffold_53707 (4581-4619) | |
| 251-363, gnl|mm7|chr1 (171253856-171253717) | |
| 251-363, gnl|mm7|chr1 (171253732-171253833) | |
| 251-363, gnl|Mm7|chr1 (171253835-171253723) | |
| 251-363, gnl|monDom2|scaffold_0 (28661120-28660992) | |
| 251-363, gnl|oryCun1|scaffold_138045 (10512-10416) | |
| 251-363, gnl|oryCun1|scaffold_197393 (40955-41082) | |
| 251-363, gnl|panTro1|chr1 (140014303-140014446) | |
| 251-363, gnl|panTro1|chr12 (78970643-78970746) | |
| 251-363, gnl|rheMac2|chr1 (139772716-139772859) | |
| 251-363, gnl|rheMac2|chr13 (76601151-76601254) | |
| 251-363, gnl|rn3|chr8 (47083162-47083287) | |
| 251-363, gnl|tetNig1|chr9 (4849073-4849193) | |
| 522-630, gnl|bosTau2|chr3 (7628134-7628026) | |
| 522-630, gnl|canFam2|chr17 (50262338-50262232) | |
| 522-630, gnl|canFam2|chr38 (24312537-24312330) | |
| 522-630, gnl|danRer3|chr23 (21503802-21504014) | |
| 522-630, gnl|dasNov1|scaffold_127434 (4715-4818) | |
| 522-630, gnl|dasNov1|scaffold_16381 (11236-11444) | |
| 522-630, gnl|echTel1|scaffold_259711 (15295-15394) | |
| 522-630, gnl|echTel1|scaffold_311345 (106186-105979) | |
| 522-630, gnl|hg17|chr1 (157947677-157947885) | |
| 522-630, gnl|Hg17|chr1 (157947698-157947806) | |
| 522-630, gnl|hg17|chr2 (76399730-76399825) | |
| 522-630, gnl|loxAfr1|scaffold_44457 (343-447) | |
| 522-630, gnl|loxAfr1|scaffold_53707 (4304-4407) | |
| 522-630, gnl|mm7|chr1 (171252918-171252713) | |
| 522-630, gnl|mm7|chr1 (171252791-171252876) | |
| 522-630, gnl|Mm7|chr1 (171252895-171252787) | |
| 522-630, gnl|monDom2|scaffold_0 (28660053-28659839) | |
| 522-630, gnl|oryCun1|scaffold_138045 (10748-10670) | |
| 522-630, gnl|oryCun1|scaffold_208402 (48385-48184) | |
| 522-630, gnl|panTro1|chr1 (140015263-140015471) | |
| 522-630, gnl|panTro1|chr12 (78970374-78970469) | |
| 522-630, gnl|rheMac2|chr1 (139773685-139773893) | |
| 522-630, gnl|rheMac2|chr13 (76600885-76600980) | |
| 522-630, gnl|rn3|chr13 (87365412-87365204) | |
| 522-630, gnl|rn3|chr13 (87365285-87365370) | |
| 741-1104, gnl|bosTau2|chr3 (7627601-7627235) | |
| 741-1104, gnl|Hg17|chr1 (157948216-157948575) | |
| 741-1104, gnl|Mm7|chr1 (171252399-171252053) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| fhi (0.169578) | |
| cki (0.165235) | |
| csp (0.161186) | |
| cli (0.152812) | |
| ute (0.132784) | |
| cly (0.120642) | |
| clu (0.119646) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fhi (0.169578) | |
| cki (0.165235) | |
| csp (0.161186) | |
| cli (0.152812) | |
| ute (0.132784) | |
| cly (0.120642) | |
| clu (0.119646) |