Non-Coding RNA Search

Ss1.1-Pig4-TMW8030H02.5

Sequence:


               
               TTTTTTTTTTTTTTTTCTTTTCTTTCCCCACTAGGTAATCACATGGAAAAATCAACTGTC
CACATCTCTTCATTAGGATTGTAAACCAAGGGAAGAACGAGTTTGAGATTTCTAAGATGA
CACTTTTGAGGAAGGAAATGTTCTATAAAAATGAACCCAGAAAGTGTTGTAACTTTTTTT
TTCTTTGCCAGGATGTCTTTGTAATGTATTTCATGATTAGAATATCCAATACAGATAAAC
TGACTTGAATCGTTTTGAGCAATTTTGCCCTGTGTTCTATGTGTTTTATGCACATATCTG
CAGTTGGATTCTCTCCAACAGAAAGTGGTTTCACTACTGGCACATTAACAAGCAACAATA
GATTTTTATTCCAACTCCAAGCACTGTGGTTGAGTAACATCACCTCAATTTTTTATTACC
CTTAAAGATAACTGCATTTTCATATTCTTTATTTATAAAGGATCAATGCTGCTGTAAATA
CAGGTATTTTTAATTTTTTTATTTCATTCCACCACCATCAGATGCAGTTCCCTATTTTGT
TTAAGGAAGGGATATATAAGCTTTCTAATGGTGTCCAGAAATTTATAAAATGTAAATACT
GATTTGGTTGGTCTTTAAGATGTGTTTAACTGTGAGGCTATTTAACTAATAGTGTGGATG
TGATTTGTCATCCAGTATTAAGTTCTTAGTCATTGATTTTTGTGTTAAAAAAAAATAGGA
AAGAGGGAAACTGCAGCTTTCATTACAGACTCCTTAATTGGTAAGCTCTCCAAATGATGA
GTTCCAGTAAACTCTGATTATGCCTCTGGATAGTGGATTTCGAGCATTTCTCTCGGGCTT
TAATTTGCTAAAGCTGTGCACATATGTAAAAAAAGAAAAAAATAGATTATTTTAGGGGAG
ATGTAGGTGTAGAATTATTGCTTATGTCATTTCTTAAGCAGTTATGCTCTTAATGCTTAA
AAGAAGGCTAGCATTGTTTGCACAAAAAGTTGGTGATTCCCTCCCCCAAATAGTAATGAA
ATTACTTCTGTTGAGTAAACTTTTTATGTCATCTTATAATAAAAGCTGAAAAAATTCCCT
TTGTTTCTATTTATAAAAAAAAAATGCTTTTCTATATGTACCCTTGATAAGAGATTTTGA
AGAAATCATGTAAGATGATAAAGCATTTGAATGGTACAGTAGATGTAAAAAAAAATTCAG
TTTAAAAGAACGTTTGTTTTTACATTAAATGTTTATTTGAAATCAAATGATTTTGTACAT
AAAGTTCAATAATATAAAAGCTGTATTCTGTATTGTTTTTGTTTTTTATTGTTATGCATT
GTTAATACATGCAAAATTTTGGCTTGGCTAGAAGAGTAAGGATCCAGGGGGAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTCTTTTCTTTCCCCACTAGGTAATCACATGGAAAAATCAACTGTC
CACATCTCTTCATTAGGATTGTAAACCAAGGGAAGAACGAGTTTGAGATTTCTAAGATGA
CACTTTTGAGGAAGGAAATGTTCTATAAAAATGAACCCAGAAAGTGTTGTAACTTTTTTT
TTCTTTGCCAGGATGTCTTTGTAATGTATTTCATGATTAGAATATCCAATACAGATAAAC
TGACTTGAATCGTTTTGAGCAATTTTGCCCTGTGTTCTATGTGTTTTATGCACATATCTG
CAGTTGGATTCTCTCCAACAGAAAGTGGTTTCACTACTGGCACATTAACAAGCAACAATA
GATTTTTATTCCAACTCCAAGCACTGTGGTTGAGTAACATCACCTCAATTTTTTATTACC
CTTAAAGATAACTGCATTTTCATATTCTTTATTTATAAAGGATCAATGCTGCTGTAAATA
CAGGTATTTTTAATTTTTTTATTTCATTCCACCACCATCAGATGCAGTTCCCTATTTTGT
TTAAGGAAGGGATATATAAGCTTTCTAATGGTGTCCAGAAATTTATAAAATGTAAATACT
GATTTGGTTGGTCTTTAAGATGTGTTTAACTGTGAGGCTATTTAACTAATAGTGTGGATG
TGATTTGTCATCCAGTATTAAGTTCTTAGTCATTGATTTTTGTGTTAAAAAAAAATAGGA
AAGAGGGAAACTGCAGCTTTCATTACAGACTCCTTAATTGGTAAGCTCTCCAAATGATGA
GTTCCAGTAAACTCTGATTATGCCTCTGGATAGTGGATTTCGAGCATTTCTCTCGGGCTT
TAATTTGCTAAAGCTGTGCACATATGTAAAAAAAGAAAAAAATAGATTATTTTAGGGGAG
ATGTAGGTGTAGAATTATTGCTTATGTCATTTCTTAAGCAGTTATGCTCTTAATGCTTAA
AAGAAGGCTAGCATTGTTTGCACAAAAAGTTGGTGATTCCCTCCCCCAAATAGTAATGAA
ATTACTTCTGTTGAGTAAACTTTTTATGTCATCTTATAATAAAAGCTGAAAAAATTCCCT
TTGTTTCTATTTATAAAAAAAAAATGCTTTTCTATATGTACCCTTGATAAGAGATTTTGA
AGAAATCATGTAAGATGATAAAGCATTTGAATGGTACAGTAGATGTAAAAAAAAATTCAG
TTTAAAAGAACGTTTGTTTTTACATTAAATGTTTATTTGAAATCAAATGATTTTGTACAT
AAAGTTCAATAATATAAAAGCTGTATTCTGTATTGTTTTTGTTTTTTATTGTTATGCATT
GTTAATACATGCAAAATTTTGGCTTGGCTAGAAGAGTAAGGATCCAGGGGGAAAAAAAAA

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               200-399, - strand, RNAz p=0.873175
               

               
               479-595, - strand, RNAz p=0.991782
               

               
               871-989, + strand, RNAz p=0.693665

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               200-399, - strand, RNAz p=0.873175
               

               
               479-595, - strand, RNAz p=0.991782
               

               
               871-989, + strand, RNAz p=0.693665

Predicted microRNA(s): 3 entry(ies)

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Predicted microRNA(s): 3 entry(ies)

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               904-996, + strand, RNAmicro p=0.989422
               

               
               489-607, - strand, RNAmicro p=0.981935
               

               
               487-607, + strand, RNAmicro p=0.936314

Predicted microRNA(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               904-996, + strand, RNAmicro p=0.989422
               

               
               489-607, - strand, RNAmicro p=0.981935
               

               
               487-607, + strand, RNAmicro p=0.936314

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_015355, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_015355, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-1366, gnl|bosTau2|chr19 (10352980-10354340)
               

               
               4-1366, gnl|Hg17|chr17 (27350899-27352254)
               

               
               4-1366, gnl|Mm7|chr11 (80114456-80115757)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-1366, gnl|bosTau2|chr19 (10352980-10354340)
               

               
               4-1366, gnl|Hg17|chr17 (27350899-27352254)
               

               
               4-1366, gnl|Mm7|chr11 (80114456-80115757)

Expressed library(ies): 20 entry(ies)

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Expressed library(ies): 20 entry(ies)

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               ssp (0.271039)
               

               
               ret (0.257467)
               

               
               thg (0.253582)
               

               
               mgm (0.180343)
               

               
               ton (0.1755)
               

               
               sin (0.174948)
               

               
               eye (0.170503)
               

               
               nco (0.161734)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               eli (0.151814)
               

               
               spl (0.143184)
               

               
               pla (0.133672)
               

               
               kid (0.129735)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

Expressed library(ies): 20 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ssp (0.271039)
               

               
               ret (0.257467)
               

               
               thg (0.253582)
               

               
               mgm (0.180343)
               

               
               ton (0.1755)
               

               
               sin (0.174948)
               

               
               eye (0.170503)
               

               
               nco (0.161734)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               eli (0.151814)
               

               
               spl (0.143184)
               

               
               pla (0.133672)
               

               
               kid (0.129735)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

	200-399, - strand, RNAz p=0.873175
	479-595, - strand, RNAz p=0.991782
	871-989, + strand, RNAz p=0.693665

	904-996, + strand, RNAmicro p=0.989422
	489-607, - strand, RNAmicro p=0.981935
	487-607, + strand, RNAmicro p=0.936314

	4-1366, gnl\|bosTau2\|chr19 (10352980-10354340)
	4-1366, gnl\|Hg17\|chr17 (27350899-27352254)
	4-1366, gnl\|Mm7\|chr11 (80114456-80115757)

	ssp (0.271039)
	ret (0.257467)
	thg (0.253582)
	mgm (0.180343)
	ton (0.1755)
	sin (0.174948)
	eye (0.170503)
	nco (0.161734)
	fco (0.157208)
	tbr (0.154178)
	eli (0.151814)
	spl (0.143184)
	pla (0.133672)
	kid (0.129735)
	ese (0.126502)
	tra (0.123092)
	eru (0.120048)
	spc (0.113366)
	cty (0.10408)
	nbm (0.0993246)