Ss1.1-Pig4-TMW8030H03.3
|
GAATGAGGCTTTGAAAGCTCAAATTCAACAATTCCATTCCCAGATAGCAGCCCAGACCTC
TGCTTCAGCTCTAGCAGAAGAATTACATAAAGTGATTGCAGAAAAGGATAAACAAATAAA
ACAGACTGAAGATTCTTTAGCAAATGAACATGATCATTTAGCAAGTAAAGAGGAGGAACT
TAAGGATATACAGAACATGAATTTCTTATTAAATGCTGAAGTGCAGAAATTACAGGCCCT
GGCAAATGAACAGGCTGCTGCTGCACATGAACTGGAGAAGATGCAAAAAAGTATTCATGT
TAAGGATGATAAAATAAGATTGCTTGAAGAGCAGCTACAATGTGAGATTTCAAACAAAAT
GGAAGAATTTAAGATTCTAAATGACCAAAATAAAGCTTTACAATTAGAAGTTCAAAAGCT
ACAGACTCTTATTTCTGAACAGCCTAATAAAGATGTCGTGGAACAAATGGAAAAATGCAT
TCAAGAAAAAGATGAGAAGTTGAAGACTGTAGAAGAATTACTTGAAACTGGACTTATTCA
GGTGGCCACTAAAGAAGAAGAACTGAATGCAATAAGAACAGAAAATTCATCTTTGAGGAA
AGAAGTTCAAGATTTAAAGGCCAAGCAGAATGATCAGGTTTCCTTTGCATCTCTAGTTGA
AGAACTTAAGAAAGTGATCCATGAAAAAGATGGAAAGATCAAGTCTGTGGAAGAACTTCT
GGAAGCTGAACTTCTCAAAGTTGCTAATAAAGAGAAAACTATTCAGGATTTGAAAAAGGA
AATAGAGGCTCTAAAAGAAGAAATAGGAAATATCCAGCTTGAAAAAGCTCAACAGTTATC
TATCACTTCTCAAGTTCAGGAACTTCAGAACTTATTGAAAGGAAAGGAGGAACAGATGAA
TACCATGAAGACTGTTTTAGAAGAGAAGGAGAAAGACTTAGCCAACAGAGGGAAGTGGTT
ACAGGATCTTCAAGAAGAAAACCAGTCTTTAAAAGCACATGTTCAGGAGGTAGCACAACA
TAATTTGAAAGAGGCGTATTCTGCATCACAATTTGACGAATTTGAGACTGTGTTGAAAGA
GAAGGAAAATGAAATGAAGAGATTGGAAACTATGCTAAAAGAGAAAGAAAGTGATCTTTC
AAGCAAAACAAAGCTGTTACAGGAGTTACAAGATGAAAACAAGCTGTTTAAATCCCAAAT
TGAGCAGCTTAAGCAACAAAGCTACCAACAAGCATCTTCTTATCCCCCTCATGAAGAGCT
ATTAAAAGTAATTTCAGAAAGAGAGAAAGAAATAAGTGGTCTTCGGAATGAATTAGATTC
TTTGAAGGATGCTGTTGAACACCAGAGGAAGAAAAACAATGAAAGACAACAACATGTGGA
AGCTATTGAGTTAGAAGCTAAAGAAGTTCTCAGAAACTTATTTCCAAAGGTGTCTGTCCC
TTCTAATTTGAGTTACAGTGAATGGTTGCATGGATTTGAAAAGAAGGCAAAAGAATGTGT
GGCTGAAACTTCAAATTCAGAGGAGGTTAAGGTATTGGAGCACAAGTTGAAAGAAGCTGA
TGAAATGCACACATTGTTACAATTAGAGTGTGAAAAATACAAGTCCGTCCTTGCAGAAAC
AGAAGGAATTTTACAGAAGTTACAGAGAAGTGTGGAGCAAGAAGAAAATAAATGGAAAGT
TAAGGTCGATGAATCACAAAAGACTATTAAACAGATGCAGTTGTCATTCACATCTTCTGA
GCAAGAGCTAGAGCGATTAAGAAGAGAAAATAAAGATATTGAAAATCTGAGAAGAGAACG
AGAGCATTTGGAAATGGAACTAGAGAAGGCAGAAATTGAACGATCTACCTATGTTACAGA
AGTCAGAGAGTTAAAGACACAGCTAAATGAAACACTCACAAAACTTAGAACTGAACAGAG
TGAAAGACAGAAAGTAGCTGGTGACTTGAATAAGGCTCAGCAGTCATTGGATCTTATCCA
GTCAAAAATAGTAAAAGCTGCTGGAGACACTACTGTTATTGAGAATAGTGATGTTTCCCC
AGAAATGGAGTCGGATCTTATCCAGTCAAAAATAGTAAAAGCTGCTGGAGACACTACTGT
TATTGAGAATAGTGATGTTTCCCCAGAAATGGAGTCTCCTGAGAAGGAGACAATGTCCGT
AAGTCTAAATCAGACTGTAACACAGTTACAGCAATTACTTCAAGCGGTAAACCAACAGCT
CACAAAGGAGAAAGAACACTATCAGATATTAGAGTGAAGTAATTGGGAAACTGTTCATTC
AAGGATAACAGAAGGCATTGTATTATATTTTGCCAAATTAAAGCCTTATTTATGTTTTCA
CCCTTTCTACTTTGTCAGAAACACTGAACAGAGTTTTGTCTTTTCTAATCCTTGTTAGAC
TACTGATTTAAAGAGAGAGGAAAAAAGCCAACTCTGTAGACACCTTCAGAGTTTAGTTTT
ATAATAAAAACTGTTTGAATAATTAGACCTTTACATTCCTGAAGATAAACATGTAATCTT
TTATCTTATTTTGCTCAATAAAATTGTTCAGAAGATCAAAAGTGGTAAAGACAATGTAAA
ATTTAACATTTTAATACTGATGTTGTACACTGTTTTACTTAATAACATTTTGAGGAGTAA
CTGCCTCTGACTTCAACTCAAGAAACACACTTTTTGTTGCTAATGTAATCAGTTTTTGTA
ATGGCGTCAGCAAATAAAGGGATGCTTATTATTCAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GAATGAGGCTTTGAAAGCTCAAATTCAACAATTCCATTCCCAGATAGCAGCCCAGACCTC
TGCTTCAGCTCTAGCAGAAGAATTACATAAAGTGATTGCAGAAAAGGATAAACAAATAAA
ACAGACTGAAGATTCTTTAGCAAATGAACATGATCATTTAGCAAGTAAAGAGGAGGAACT
TAAGGATATACAGAACATGAATTTCTTATTAAATGCTGAAGTGCAGAAATTACAGGCCCT
GGCAAATGAACAGGCTGCTGCTGCACATGAACTGGAGAAGATGCAAAAAAGTATTCATGT
TAAGGATGATAAAATAAGATTGCTTGAAGAGCAGCTACAATGTGAGATTTCAAACAAAAT
GGAAGAATTTAAGATTCTAAATGACCAAAATAAAGCTTTACAATTAGAAGTTCAAAAGCT
ACAGACTCTTATTTCTGAACAGCCTAATAAAGATGTCGTGGAACAAATGGAAAAATGCAT
TCAAGAAAAAGATGAGAAGTTGAAGACTGTAGAAGAATTACTTGAAACTGGACTTATTCA
GGTGGCCACTAAAGAAGAAGAACTGAATGCAATAAGAACAGAAAATTCATCTTTGAGGAA
AGAAGTTCAAGATTTAAAGGCCAAGCAGAATGATCAGGTTTCCTTTGCATCTCTAGTTGA
AGAACTTAAGAAAGTGATCCATGAAAAAGATGGAAAGATCAAGTCTGTGGAAGAACTTCT
GGAAGCTGAACTTCTCAAAGTTGCTAATAAAGAGAAAACTATTCAGGATTTGAAAAAGGA
AATAGAGGCTCTAAAAGAAGAAATAGGAAATATCCAGCTTGAAAAAGCTCAACAGTTATC
TATCACTTCTCAAGTTCAGGAACTTCAGAACTTATTGAAAGGAAAGGAGGAACAGATGAA
TACCATGAAGACTGTTTTAGAAGAGAAGGAGAAAGACTTAGCCAACAGAGGGAAGTGGTT
ACAGGATCTTCAAGAAGAAAACCAGTCTTTAAAAGCACATGTTCAGGAGGTAGCACAACA
TAATTTGAAAGAGGCGTATTCTGCATCACAATTTGACGAATTTGAGACTGTGTTGAAAGA
GAAGGAAAATGAAATGAAGAGATTGGAAACTATGCTAAAAGAGAAAGAAAGTGATCTTTC
AAGCAAAACAAAGCTGTTACAGGAGTTACAAGATGAAAACAAGCTGTTTAAATCCCAAAT
TGAGCAGCTTAAGCAACAAAGCTACCAACAAGCATCTTCTTATCCCCCTCATGAAGAGCT
ATTAAAAGTAATTTCAGAAAGAGAGAAAGAAATAAGTGGTCTTCGGAATGAATTAGATTC
TTTGAAGGATGCTGTTGAACACCAGAGGAAGAAAAACAATGAAAGACAACAACATGTGGA
AGCTATTGAGTTAGAAGCTAAAGAAGTTCTCAGAAACTTATTTCCAAAGGTGTCTGTCCC
TTCTAATTTGAGTTACAGTGAATGGTTGCATGGATTTGAAAAGAAGGCAAAAGAATGTGT
GGCTGAAACTTCAAATTCAGAGGAGGTTAAGGTATTGGAGCACAAGTTGAAAGAAGCTGA
TGAAATGCACACATTGTTACAATTAGAGTGTGAAAAATACAAGTCCGTCCTTGCAGAAAC
AGAAGGAATTTTACAGAAGTTACAGAGAAGTGTGGAGCAAGAAGAAAATAAATGGAAAGT
TAAGGTCGATGAATCACAAAAGACTATTAAACAGATGCAGTTGTCATTCACATCTTCTGA
GCAAGAGCTAGAGCGATTAAGAAGAGAAAATAAAGATATTGAAAATCTGAGAAGAGAACG
AGAGCATTTGGAAATGGAACTAGAGAAGGCAGAAATTGAACGATCTACCTATGTTACAGA
AGTCAGAGAGTTAAAGACACAGCTAAATGAAACACTCACAAAACTTAGAACTGAACAGAG
TGAAAGACAGAAAGTAGCTGGTGACTTGAATAAGGCTCAGCAGTCATTGGATCTTATCCA
GTCAAAAATAGTAAAAGCTGCTGGAGACACTACTGTTATTGAGAATAGTGATGTTTCCCC
AGAAATGGAGTCGGATCTTATCCAGTCAAAAATAGTAAAAGCTGCTGGAGACACTACTGT
TATTGAGAATAGTGATGTTTCCCCAGAAATGGAGTCTCCTGAGAAGGAGACAATGTCCGT
AAGTCTAAATCAGACTGTAACACAGTTACAGCAATTACTTCAAGCGGTAAACCAACAGCT
CACAAAGGAGAAAGAACACTATCAGATATTAGAGTGAAGTAATTGGGAAACTGTTCATTC
AAGGATAACAGAAGGCATTGTATTATATTTTGCCAAATTAAAGCCTTATTTATGTTTTCA
CCCTTTCTACTTTGTCAGAAACACTGAACAGAGTTTTGTCTTTTCTAATCCTTGTTAGAC
TACTGATTTAAAGAGAGAGGAAAAAAGCCAACTCTGTAGACACCTTCAGAGTTTAGTTTT
ATAATAAAAACTGTTTGAATAATTAGACCTTTACATTCCTGAAGATAAACATGTAATCTT
TTATCTTATTTTGCTCAATAAAATTGTTCAGAAGATCAAAAGTGGTAAAGACAATGTAAA
ATTTAACATTTTAATACTGATGTTGTACACTGTTTTACTTAATAACATTTTGAGGAGTAA
CTGCCTCTGACTTCAACTCAAGAAACACACTTTTTGTTGCTAATGTAATCAGTTTTTGTA
ATGGCGTCAGCAAATAAAGGGATGCTTATTATTCAAAAAAAAAAAAAA
|
|
2363-2612, gnl|bosTau2|chr7 (65501573-65501827) |
|
2363-2612, gnl|Hg17|chr14 (55220679-55220936) |
| |
|
2622-2748, gnl|bosTau2|chr12 (5414649-5414774) |
|
2622-2748, gnl|canFam2|chr22 (8953946-8953848) |
|
2622-2748, gnl|hg17|chr13 (44479144-44479235) |
|
2622-2748, gnl|loxAfr1|scaffold_1451 (104114-104206) |
|
2622-2748, gnl|mm7|chr14 (70785760-70785651) |
|
2622-2748, gnl|oryCun1|scaffold_174227 (97346-97447) |
|
2622-2748, gnl|panTro1|chr14 (44200805-44200896) |
|
2622-2748, gnl|rheMac2|chr17 (23923850-23923941) |
|
2622-2748, gnl|rn3|chr15 (57040249-57040145) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
2363-2612, gnl|bosTau2|chr7 (65501573-65501827) |
|
2363-2612, gnl|Hg17|chr14 (55220679-55220936) |
| |
|
2622-2748, gnl|bosTau2|chr12 (5414649-5414774) |
|
2622-2748, gnl|canFam2|chr22 (8953946-8953848) |
|
2622-2748, gnl|hg17|chr13 (44479144-44479235) |
|
2622-2748, gnl|loxAfr1|scaffold_1451 (104114-104206) |
|
2622-2748, gnl|mm7|chr14 (70785760-70785651) |
|
2622-2748, gnl|oryCun1|scaffold_174227 (97346-97447) |
|
2622-2748, gnl|panTro1|chr14 (44200805-44200896) |
|
2622-2748, gnl|rheMac2|chr17 (23923850-23923941) |
|
2622-2748, gnl|rn3|chr15 (57040249-57040145) |
|
tbr (0.462535) |
|
mas (0.42061) |
|
fty (0.351679) |
|
sin (0.349895) |
|
rec (0.346141) |
|
sme (0.305437) |
|
bfe (0.299715) |
|
ski (0.29347) |
|
liv (0.292569) |
|
lin (0.291206) |
|
tra (0.246184) |
|
cty (0.20816) |
|
tes (0.207814) |
|
aor (0.195274) |
|
nep (0.183925) |
|
sag (0.182715) |
|
fco (0.157208) |
|
eli (0.151814) |
|
isp (0.150376) |
|
fat (0.147427) |
|
hyp (0.142837) |
|
nca (0.136874) |
|
ssp (0.13552) |
|
ste (0.135208) |
|
pla (0.133672) |
|
ret (0.128733) |
|
bla (0.124347) |
|
pgl (0.118483) |
|
ebs (0.118301) |
|
cbl (0.114797) |
|
ldo (0.0970026) |
|
tbr (0.462535) |
|
mas (0.42061) |
|
fty (0.351679) |
|
sin (0.349895) |
|
rec (0.346141) |
|
sme (0.305437) |
|
bfe (0.299715) |
|
ski (0.29347) |
|
liv (0.292569) |
|
lin (0.291206) |
|
tra (0.246184) |
|
cty (0.20816) |
|
tes (0.207814) |
|
aor (0.195274) |
|
nep (0.183925) |
|
sag (0.182715) |
|
fco (0.157208) |
|
eli (0.151814) |
|
isp (0.150376) |
|
fat (0.147427) |
|
hyp (0.142837) |
|
nca (0.136874) |
|
ssp (0.13552) |
|
ste (0.135208) |
|
pla (0.133672) |
|
ret (0.128733) |
|
bla (0.124347) |
|
pgl (0.118483) |
|
ebs (0.118301) |
|
cbl (0.114797) |
|
ldo (0.0970026) |
