Non-Coding RNA Search

Ss1.1-Pig4-TMW8030H12.3

Sequence:


               
               AAAAAAATGGGTTATCTCCATGATAAATTATATTTCATTCCAGTAATAATTTTCAACACA
TACCGAATAACTGGAGATTTATTCAGATAAAGGTATTAATGGCTCCAAGGTAGATATATG
CCTCAGACTAACCCTTAAACTAGCTAAATAGTGAGTCAACTCTGTAGGACTGTGCTTTTC
TGAACTAAAGATGATCTGTTTCTCAGTTTTATGTGTATAATACTTTGCTGGTGCTAGAAT
TGATAGAATTTCAAAATGTTGGCCCCAATAATGATTGTGTTAGTTCATAATCTTTATTAG
GTTATGAGTATAATTCCAAAAAGTATTAGCAATATTTCCAAGCAGTTTTTGATCTTTATT
CTGTGTTTCTGGGCATTTGTAATATGGTATTCTACTGATTTATATATATTTTTAATTAAA
GTTTGTGTTTAGATTATGATGGGGAAAGAATTTTGGAAGTATATTTCTTCTTATAAAAAA
TACTAAGACAAGTGTTTTGAATATCAACACACACCTCCTCATTTATTTCAGTTGAACTCT
AGAAACAATTGTGTGAACTTTTATTTGATTTTGGGTTAAAGCTGGTTCACACTTAAAACT
TATTTTGTAGCACATTGCGTAAATTGATTAAACACACCATACAATATTTTTCGTACATTT
TTTTCAGTGACATTTTGGAGTTGGGTAACAGTTTAAAATTTACTTTATACCATTTAGCTT
GTGCAAACATGTTTAAAGCTTTTGAAGAAAAACTAGGTGATGTGGTCAAGAGTAAAAGTC
TCACATTTTTGGTAGGAGTGTCATGAATTAATTCTACCTTTCTTAAATAACAAGTATGTA
CTTCATATCTGGTTGGGGTACTGGTTCAACTGCATTTTAAATAGCTAATGAAGAATGTTA
CTGGACTGGAATCAAACTTAGAGAACTTTGAAATATTTAAAATGTATTAGAAAGTGCATG
CTCTGTGTTAAAAAAATACATTGCTTTTTAACATTTGCCATTCTTGCTTTTTTTCAAAAA
TTTACATTAATTTTGCATGTGCACAGACTTAATCAAAAAACATTTTGTGGGGTTACAGAT
TTCTCTTATTTGTTATTTATGAAGATTCAGTATTAACTTGACCTTTTGAAACCTTAGTCC
CTTTACCTTGTCCCATTGACTGATGTTTTTAGGCTATAGTGATGCCTAGAATTTTGAGAC
TAAAATTAGTTACTTTTTATTTTAACATTCCAAAAATTCTGTGGTTTTCTGGTTTTTACC
ACATTTTTTCCATTATGTTCCTTTAAATGGCCACAGTATGTATTAGATGAATGTTCTATC
CAAAAGATGTAGCTTTGGAAGCACAGTGGTTGCCCAAGGTCCATTGTAGTATGAGGATGG
AGTGCTATCTACTGAAATAATACTCATACAGATATGTAGTATGTAATATTTTCTAATAAA
TTCTTTTGATAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAAATGGGTTATCTCCATGATAAATTATATTTCATTCCAGTAATAATTTTCAACACA
TACCGAATAACTGGAGATTTATTCAGATAAAGGTATTAATGGCTCCAAGGTAGATATATG
CCTCAGACTAACCCTTAAACTAGCTAAATAGTGAGTCAACTCTGTAGGACTGTGCTTTTC
TGAACTAAAGATGATCTGTTTCTCAGTTTTATGTGTATAATACTTTGCTGGTGCTAGAAT
TGATAGAATTTCAAAATGTTGGCCCCAATAATGATTGTGTTAGTTCATAATCTTTATTAG
GTTATGAGTATAATTCCAAAAAGTATTAGCAATATTTCCAAGCAGTTTTTGATCTTTATT
CTGTGTTTCTGGGCATTTGTAATATGGTATTCTACTGATTTATATATATTTTTAATTAAA
GTTTGTGTTTAGATTATGATGGGGAAAGAATTTTGGAAGTATATTTCTTCTTATAAAAAA
TACTAAGACAAGTGTTTTGAATATCAACACACACCTCCTCATTTATTTCAGTTGAACTCT
AGAAACAATTGTGTGAACTTTTATTTGATTTTGGGTTAAAGCTGGTTCACACTTAAAACT
TATTTTGTAGCACATTGCGTAAATTGATTAAACACACCATACAATATTTTTCGTACATTT
TTTTCAGTGACATTTTGGAGTTGGGTAACAGTTTAAAATTTACTTTATACCATTTAGCTT
GTGCAAACATGTTTAAAGCTTTTGAAGAAAAACTAGGTGATGTGGTCAAGAGTAAAAGTC
TCACATTTTTGGTAGGAGTGTCATGAATTAATTCTACCTTTCTTAAATAACAAGTATGTA
CTTCATATCTGGTTGGGGTACTGGTTCAACTGCATTTTAAATAGCTAATGAAGAATGTTA
CTGGACTGGAATCAAACTTAGAGAACTTTGAAATATTTAAAATGTATTAGAAAGTGCATG
CTCTGTGTTAAAAAAATACATTGCTTTTTAACATTTGCCATTCTTGCTTTTTTTCAAAAA
TTTACATTAATTTTGCATGTGCACAGACTTAATCAAAAAACATTTTGTGGGGTTACAGAT
TTCTCTTATTTGTTATTTATGAAGATTCAGTATTAACTTGACCTTTTGAAACCTTAGTCC
CTTTACCTTGTCCCATTGACTGATGTTTTTAGGCTATAGTGATGCCTAGAATTTTGAGAC
TAAAATTAGTTACTTTTTATTTTAACATTCCAAAAATTCTGTGGTTTTCTGGTTTTTACC
ACATTTTTTCCATTATGTTCCTTTAAATGGCCACAGTATGTATTAGATGAATGTTCTATC
CAAAAGATGTAGCTTTGGAAGCACAGTGGTTGCCCAAGGTCCATTGTAGTATGAGGATGG
AGTGCTATCTACTGAAATAATACTCATACAGATATGTAGTATGTAATATTTTCTAATAAA
TTCTTTTGATAA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               51-403, gnl|bosTau2|chr19 (15827973-15827618)
               

               
               51-403, gnl|Hg17|chr12 (44600527-44600170)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               51-403, gnl|bosTau2|chr19 (15827973-15827618)
               

               
               51-403, gnl|Hg17|chr12 (44600527-44600170)

Expressed library(ies): 9 entry(ies)

More info

Expressed library(ies): 9 entry(ies)

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               lin (0.728014)
               

               
               bfe (0.299715)
               

               
               ret (0.257467)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               sin (0.174948)
               

               
               liv (0.146284)
               

               
               lnt (0.142308)
               

               
               kid (0.129735)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.728014)
               

               
               bfe (0.299715)
               

               
               ret (0.257467)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               sin (0.174948)
               

               
               liv (0.146284)
               

               
               lnt (0.142308)
               

               
               kid (0.129735)

	51-403, gnl\|bosTau2\|chr19 (15827973-15827618)
	51-403, gnl\|Hg17\|chr12 (44600527-44600170)

	lin (0.728014)
	bfe (0.299715)
	ret (0.257467)
	aor (0.195274)
	sag (0.182715)
	sin (0.174948)
	liv (0.146284)
	lnt (0.142308)
	kid (0.129735)