Ss1.1-Pig4-TMW8030H13.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCACAGGGGTGCCGGGCTGACTGAGAGGATGGCTGGCTTTGCTGAGCTCGGGCTGTCATC GTGGCTGGTGGAACAATGTCGGCAGCTGGGTTTGAAGCAGCCCACGCCCGTGCAGCTCGG CTGCATCCCCGCCATCCTGGAGGGTCGGGACTGCCTCGGCTGTGCCAAGACAGGCAGCGG CAAGACAGCAGCGTTTGTCCTGCCCATCTTGCAGAAGCTGTCTGAAGATCCCTATGGTAT CTTCTGCCTCGTCCTGACACCCACAAGGGAGCTGGCCTACCAGATTGCAGAGCAGTTCCG GGTCCTGGGGAAGCCTCTGGGCTTGAAAGACTGCATCATCGTTGGTGGCATGGACATGGT GGCACAGGCCCTGGAGCTGTCCAGAAAACCACACGTGGTCATTGCCACACCAGGGCGCCT TGCTGACCACCTCCGCAGCTCCAACACCTTCAGCATAAAGAAGATCCGCTTCCTGGTGAT GGATGAGGCCGACCGGCTGTTGGAGCAGGGCTGCACTGACTTCACCGTGGACCTGGAGGC CATCCTGGCAGCCGTGCCGGCCCGCAGGCAAACGCTGCTCTTCAGTGCAACACTGACTGA CACGCTGAGGGAGCTGCAGAGCCTTGCCACCAACCAGCCCTTCTTCTGGGAGGCTCAGGC CCCGGTGCGTACTGTAGAACAGCTGGACCAGCGCTACCTGCTAGTGCCCGAGAAGGTCAA GGATGCCTACCTGGTCCACCTGATCCAGAACTTCCAGGACGAGCACGAGGACTGGTCCAT CATCATCTTCACCAACACGTGCAAGACCTGCCAAATCCTGTGCATGATGCTGCGAAAATT CAACTTCCCCACCGTGGCCCTGCATTCCATGATGAAACAGAAAGAGCGCTTTGCCGCCCT GGCCAAGTTCAAATCCAGCATCTACCGGATCCTGATCGCCACAGATGTGGCCTCCCGGGG CCTGGACATTCCCACAGTGCAGGTGGTCATCAACCACAACACCCCTGGGCTCCCGAAGAT CTACATCCATCGAGTTGGCCGGACAGCCCGCGCAGGGCGGCAGGGACAGGCCATCACGCT GGTGACGCAATATGACATCCACCTGGTACACGCCATTGAGGAGCAAATCAAGAAGAAGCT GGAGGAGTTTTCAGTGGAGGAAGCCGAGGTGCTGCAGATCCTCACTCAGGTCAACGTGGT GCGGAGGGAGTGCGAGATTAAACTGGAGGCGGCCAACTTTGATGAGAAGAAGGAGATTAA CAAGCGGAAGCAGATGATCCTGGAGGGGAAGGATCCGGACCTGGAGGCCAAGCGCAAGGC GGAGCTGGCCAAGATCAAGCAGAAGAACCGGCGCTTCAAGGAGAAAGTGGAGCAGGCACT GCAGCGGCAGAAGGCTGGCAGGGCTGGCCACGGGGGCTGTCCACCCAGGGCCCAGCCCAG GGCCCACTCATCTCCAGCACCCTCTCAGGGCCCAGCCTGAGTTCCACACCACTCCCACTG TGCCCAGTCTCCCTCGGTGGAGCCCACGGACACCCACGTTGTGCAGTGCACGGCCCCTCC ATCCTGTAGCCCCTGGTGGCCCCTTTTCAGAGCCTTGGCCAAGAGGCAGCCTGCAGAGGA GGAAAGAACACTGGCCATGAGGTTGGGCCCAAGTCCACATACAGTGACCCCAAGCCAGTG TCACCCTGGGTGTGCAGTGGGGCCACAGAGCGAAGGCGTGTCACTTGCAGGAGATGCTCA ATAAATGGATCTTTTGAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCACAGGGGTGCCGGGCTGACTGAGAGGATGGCTGGCTTTGCTGAGCTCGGGCTGTCATC GTGGCTGGTGGAACAATGTCGGCAGCTGGGTTTGAAGCAGCCCACGCCCGTGCAGCTCGG CTGCATCCCCGCCATCCTGGAGGGTCGGGACTGCCTCGGCTGTGCCAAGACAGGCAGCGG CAAGACAGCAGCGTTTGTCCTGCCCATCTTGCAGAAGCTGTCTGAAGATCCCTATGGTAT CTTCTGCCTCGTCCTGACACCCACAAGGGAGCTGGCCTACCAGATTGCAGAGCAGTTCCG GGTCCTGGGGAAGCCTCTGGGCTTGAAAGACTGCATCATCGTTGGTGGCATGGACATGGT GGCACAGGCCCTGGAGCTGTCCAGAAAACCACACGTGGTCATTGCCACACCAGGGCGCCT TGCTGACCACCTCCGCAGCTCCAACACCTTCAGCATAAAGAAGATCCGCTTCCTGGTGAT GGATGAGGCCGACCGGCTGTTGGAGCAGGGCTGCACTGACTTCACCGTGGACCTGGAGGC CATCCTGGCAGCCGTGCCGGCCCGCAGGCAAACGCTGCTCTTCAGTGCAACACTGACTGA CACGCTGAGGGAGCTGCAGAGCCTTGCCACCAACCAGCCCTTCTTCTGGGAGGCTCAGGC CCCGGTGCGTACTGTAGAACAGCTGGACCAGCGCTACCTGCTAGTGCCCGAGAAGGTCAA GGATGCCTACCTGGTCCACCTGATCCAGAACTTCCAGGACGAGCACGAGGACTGGTCCAT CATCATCTTCACCAACACGTGCAAGACCTGCCAAATCCTGTGCATGATGCTGCGAAAATT CAACTTCCCCACCGTGGCCCTGCATTCCATGATGAAACAGAAAGAGCGCTTTGCCGCCCT GGCCAAGTTCAAATCCAGCATCTACCGGATCCTGATCGCCACAGATGTGGCCTCCCGGGG CCTGGACATTCCCACAGTGCAGGTGGTCATCAACCACAACACCCCTGGGCTCCCGAAGAT CTACATCCATCGAGTTGGCCGGACAGCCCGCGCAGGGCGGCAGGGACAGGCCATCACGCT GGTGACGCAATATGACATCCACCTGGTACACGCCATTGAGGAGCAAATCAAGAAGAAGCT GGAGGAGTTTTCAGTGGAGGAAGCCGAGGTGCTGCAGATCCTCACTCAGGTCAACGTGGT GCGGAGGGAGTGCGAGATTAAACTGGAGGCGGCCAACTTTGATGAGAAGAAGGAGATTAA CAAGCGGAAGCAGATGATCCTGGAGGGGAAGGATCCGGACCTGGAGGCCAAGCGCAAGGC GGAGCTGGCCAAGATCAAGCAGAAGAACCGGCGCTTCAAGGAGAAAGTGGAGCAGGCACT GCAGCGGCAGAAGGCTGGCAGGGCTGGCCACGGGGGCTGTCCACCCAGGGCCCAGCCCAG GGCCCACTCATCTCCAGCACCCTCTCAGGGCCCAGCCTGAGTTCCACACCACTCCCACTG TGCCCAGTCTCCCTCGGTGGAGCCCACGGACACCCACGTTGTGCAGTGCACGGCCCCTCC ATCCTGTAGCCCCTGGTGGCCCCTTTTCAGAGCCTTGGCCAAGAGGCAGCCTGCAGAGGA GGAAAGAACACTGGCCATGAGGTTGGGCCCAAGTCCACATACAGTGACCCCAAGCCAGTG TCACCCTGGGTGTGCAGTGGGGCCACAGAGCGAAGGCGTGTCACTTGCAGGAGATGCTCA ATAAATGGATCTTTTGAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 143-1510, - strand, RNAz p=0.999764 | |
| 1571-1764, + strand, RNAz p=0.918258 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 143-1510, - strand, RNAz p=0.999764 | |
| 1571-1764, + strand, RNAz p=0.918258 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 143-268, gnl|bosTau2|chr7 (2358490-2358615) | |
| 143-268, gnl|Hg17|chr19 (18892388-18892513) | |
| 143-268, gnl|Mm7|chr8 (68756307-68756182) | |
| 475-677, gnl|bosTau2|chr7 (2360120-2360320) | |
| 475-677, gnl|canFam2|chr20 (47193892-47193695) | |
| 475-677, gnl|danRer3|chr20 (3411511-3411331) | |
| 475-677, gnl|fr1|chrUn (191875741-191875544) | |
| 475-677, gnl|galGal2|chr28 (3089756-3089558) | |
| 475-677, gnl|hg17|chr19 (18894131-18894328) | |
| 475-677, gnl|Hg17|chr19 (18894134-18894334) | |
| 475-677, gnl|loxAfr1|scaffold_34753 (22471-22274) | |
| 475-677, gnl|mm7|chr8 (68752527-68752330) | |
| 475-677, gnl|Mm7|chr8 (68752522-68752321) | |
| 475-677, gnl|monDom2|scaffold_75 (1663360-1663558) | |
| 475-677, gnl|panTro1|chr20 (19966086-19966283) | |
| 475-677, gnl|rheMac2|chr19 (18551568-18551765) | |
| 475-677, gnl|rn3|chr16 (19613663-19613860) | |
| 475-677, gnl|tetNig1|chr1 (14883678-14883493) | |
| 475-677, gnl|xenTro1|scaffold_788 (57479-57660) | |
| 950-1063, gnl|bosTau2|chr7 (2362145-2362258) | |
| 950-1063, gnl|Hg17|chr19 (18896683-18896796) | |
| 950-1063, gnl|Mm7|chr8 (68750675-68750562) | |
| 1290-1510, gnl|bosTau2|chr7 (2364330-2364549) | |
| 1290-1510, gnl|Hg17|chr19 (18899935-18900151) | |
| 1571-1764, gnl|bosTau2|chr2 (59633354-59633545) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 143-268, gnl|bosTau2|chr7 (2358490-2358615) | |
| 143-268, gnl|Hg17|chr19 (18892388-18892513) | |
| 143-268, gnl|Mm7|chr8 (68756307-68756182) | |
| 475-677, gnl|bosTau2|chr7 (2360120-2360320) | |
| 475-677, gnl|canFam2|chr20 (47193892-47193695) | |
| 475-677, gnl|danRer3|chr20 (3411511-3411331) | |
| 475-677, gnl|fr1|chrUn (191875741-191875544) | |
| 475-677, gnl|galGal2|chr28 (3089756-3089558) | |
| 475-677, gnl|hg17|chr19 (18894131-18894328) | |
| 475-677, gnl|Hg17|chr19 (18894134-18894334) | |
| 475-677, gnl|loxAfr1|scaffold_34753 (22471-22274) | |
| 475-677, gnl|mm7|chr8 (68752527-68752330) | |
| 475-677, gnl|Mm7|chr8 (68752522-68752321) | |
| 475-677, gnl|monDom2|scaffold_75 (1663360-1663558) | |
| 475-677, gnl|panTro1|chr20 (19966086-19966283) | |
| 475-677, gnl|rheMac2|chr19 (18551568-18551765) | |
| 475-677, gnl|rn3|chr16 (19613663-19613860) | |
| 475-677, gnl|tetNig1|chr1 (14883678-14883493) | |
| 475-677, gnl|xenTro1|scaffold_788 (57479-57660) | |
| 950-1063, gnl|bosTau2|chr7 (2362145-2362258) | |
| 950-1063, gnl|Hg17|chr19 (18896683-18896796) | |
| 950-1063, gnl|Mm7|chr8 (68750675-68750562) | |
| 1290-1510, gnl|bosTau2|chr7 (2364330-2364549) | |
| 1290-1510, gnl|Hg17|chr19 (18899935-18900151) | |
| 1571-1764, gnl|bosTau2|chr2 (59633354-59633545) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| mgp (0.230681) | |
| cst (0.140036) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| ese (0.126502) | |
| eru (0.120048) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mgp (0.230681) | |
| cst (0.140036) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| ese (0.126502) | |
| eru (0.120048) |