Ss1.1-Pig4-TMW8030I16.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCCCCAACTTGCCGAACCTCTTTGAGAACGCAGGAGAGTTCAAATACAAGCAGATCCCCA TCTCTGATCACTGGAGCCAAAACCTGTCCCAGTTTTTCCCTGAGGCCATTTCTTTCATAG ATGAAGCCCGGGGCAAAAATTGTGGTGTCTTGGTGCATTGCTTGGCCGGCATCAGCCGCT CGGTCACTGTGACTGTGGCTTATCTTATGCAAAAGCTCAACCTGTCGATGAATGATGCTT ATGACATTGTGAAGATGAAGAAATCCAACATCTCCCCCAACTTCAACTTCATGGGCCAGC TGCTGGACTTCGAGAGGACGCTGGGACTCAGCAGCCCCTGTGACAACCGCGTCCCCGCCC AGCAGCTCTATTTCACCACCCCCTCCAACCAGAACGTCTACCAGGTGGACTCCCTGCAAT CCACGTGAAAGGCCCCACGCTGGGACGTGTCCGTTCCTTTAGCAGTTTCTCTTAGCAGCA TCCACTGGGCTGCTTTCTTTGTATGTGGCCCCAGGTGTCACCATGACACCAGCTGTCTGT GTTAGACAAGGTTATCACGTGTGGAATTGGCTATTACAAAGGGAGAGGTTTGCTCCCTGC TCGTTGGAAGAACAGGCCATGCTGTATAGATAGGGGCAGTAGGTTTGGTCCACACCCATG TGTACAGCCTACCCCTGCAGGGACTGGAACTCGAGGACTTCCAGGTATATAGGGTAGGAC CAAATGGTAGGTGGGAGCATGAGCTCTTTAGGGCCTCGTATGACTGTTTCCTTTTGCGTC TGGAACTGACTCTATCTTGTCTTCAGTGAAGACCGATGCAATGTTGCATATAGAGGAGCC AAAGAGAGGTTTCAGCTCTGTATTTGTAGTATCAGTTTGCAAAAAATGAAAATAAATAAT AACGCAATCAAATGAATCTGATACTCCATTTGATTATTGTAAATATTTGATCTTAAATCC CTTGACAGTGTTTGTTTGAATTGTGTTTGTTTTTCCTTTGATGGGTTTAGAAAAAAATCA TCCAAAGGGGGAGAGAGCAGTATACCACTTCTTCAAACAACAAAATAGAAACTTTGGCTC TTTCCTAATCCAAAGGATATATTTGCAGCATGCGCAGCTTCACCAGTCCTGAATGATATT TTCATGGACACTGTTATCACACAGACCTTGTTATGGTGCAGTCTTTAGTCTCTTTCATAT ATCTTCCTTGTGACTTTTTTTTTTTCTTTTAATGTAGTTTGATTCTGCCTTACTTTTGTA AATATTTTGGCTTGTATTGTCTCAAAGGGGATATCTTGGAAAGACACCAAAATCATGGGC TCTTTTTTTTTTCTTTTTTTTTAAACTTCAACTGTGCTGAACAGTATATTACCTCTGTAC AAAATTCTTCAGGGAGTGTCACCTCAAATGCAATACTTTGAGTTGGTTTCTTTCTTTTTA AAAACAATTTGTGTGAAACTGGAAGCGTGTGTGTGTGTGTGAGCATGGGGACCCATATTC CGTAGGCGACATGCATACGATTGTGAAGGAGGGGGACTTCCGTCGCTCCATTATGTTCAT GATGTAAAGTTTTGAGCTGAAATTTATTATAAGAATGTAAAACCTTAAATTATTAATAAA TAACTATTTTGGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCCCCAACTTGCCGAACCTCTTTGAGAACGCAGGAGAGTTCAAATACAAGCAGATCCCCA TCTCTGATCACTGGAGCCAAAACCTGTCCCAGTTTTTCCCTGAGGCCATTTCTTTCATAG ATGAAGCCCGGGGCAAAAATTGTGGTGTCTTGGTGCATTGCTTGGCCGGCATCAGCCGCT CGGTCACTGTGACTGTGGCTTATCTTATGCAAAAGCTCAACCTGTCGATGAATGATGCTT ATGACATTGTGAAGATGAAGAAATCCAACATCTCCCCCAACTTCAACTTCATGGGCCAGC TGCTGGACTTCGAGAGGACGCTGGGACTCAGCAGCCCCTGTGACAACCGCGTCCCCGCCC AGCAGCTCTATTTCACCACCCCCTCCAACCAGAACGTCTACCAGGTGGACTCCCTGCAAT CCACGTGAAAGGCCCCACGCTGGGACGTGTCCGTTCCTTTAGCAGTTTCTCTTAGCAGCA TCCACTGGGCTGCTTTCTTTGTATGTGGCCCCAGGTGTCACCATGACACCAGCTGTCTGT GTTAGACAAGGTTATCACGTGTGGAATTGGCTATTACAAAGGGAGAGGTTTGCTCCCTGC TCGTTGGAAGAACAGGCCATGCTGTATAGATAGGGGCAGTAGGTTTGGTCCACACCCATG TGTACAGCCTACCCCTGCAGGGACTGGAACTCGAGGACTTCCAGGTATATAGGGTAGGAC CAAATGGTAGGTGGGAGCATGAGCTCTTTAGGGCCTCGTATGACTGTTTCCTTTTGCGTC TGGAACTGACTCTATCTTGTCTTCAGTGAAGACCGATGCAATGTTGCATATAGAGGAGCC AAAGAGAGGTTTCAGCTCTGTATTTGTAGTATCAGTTTGCAAAAAATGAAAATAAATAAT AACGCAATCAAATGAATCTGATACTCCATTTGATTATTGTAAATATTTGATCTTAAATCC CTTGACAGTGTTTGTTTGAATTGTGTTTGTTTTTCCTTTGATGGGTTTAGAAAAAAATCA TCCAAAGGGGGAGAGAGCAGTATACCACTTCTTCAAACAACAAAATAGAAACTTTGGCTC TTTCCTAATCCAAAGGATATATTTGCAGCATGCGCAGCTTCACCAGTCCTGAATGATATT TTCATGGACACTGTTATCACACAGACCTTGTTATGGTGCAGTCTTTAGTCTCTTTCATAT ATCTTCCTTGTGACTTTTTTTTTTTCTTTTAATGTAGTTTGATTCTGCCTTACTTTTGTA AATATTTTGGCTTGTATTGTCTCAAAGGGGATATCTTGGAAAGACACCAAAATCATGGGC TCTTTTTTTTTTCTTTTTTTTTAAACTTCAACTGTGCTGAACAGTATATTACCTCTGTAC AAAATTCTTCAGGGAGTGTCACCTCAAATGCAATACTTTGAGTTGGTTTCTTTCTTTTTA AAAACAATTTGTGTGAAACTGGAAGCGTGTGTGTGTGTGTGAGCATGGGGACCCATATTC CGTAGGCGACATGCATACGATTGTGAAGGAGGGGGACTTCCGTCGCTCCATTATGTTCAT GATGTAAAGTTTTGAGCTGAAATTTATTATAAGAATGTAAAACCTTAAATTATTAATAAA TAACTATTTTGGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 3-118, gnl|bosTau2|chr22 (36618027-36617912) | |
| 3-118, gnl|canFam2|chr20 (40674232-40673996) | |
| 3-118, gnl|danRer3|chr25 (13201124-13201359) | |
| 3-118, gnl|dasNov1|scaffold_46500 (11707-11943) | |
| 3-118, gnl|echTel1|scaffold_278473 (41304-41508) | |
| 3-118, gnl|fr1|chrUn (153806589-153806825) | |
| 3-118, gnl|galGal2|chr1 (40083250-40083480) | |
| 3-118, gnl|hg17|chr3 (52062991-52063227) | |
| 3-118, gnl|Hg17|chr3 (52063113-52062998) | |
| 3-118, gnl|loxAfr1|scaffold_4301 (39035-39264) | |
| 3-118, gnl|mm7|chr9 (106100590-106100354) | |
| 3-118, gnl|Mm7|chr9 (106100466-106100581) | |
| 3-118, gnl|monDom2|scaffold_5 (71485220-71484984) | |
| 3-118, gnl|oryCun1|scaffold_192070 (41544-41751) | |
| 3-118, gnl|panTro1|chr2 (53673189-53673425) | |
| 3-118, gnl|rheMac2|chr2 (84340341-84340105) | |
| 3-118, gnl|rn3|chr8 (111532185-111531949) | |
| 3-118, gnl|tetNig1|chr11 (3581024-3580788) | |
| 3-118, gnl|xenTro1|scaffold_1092 (170218-170448) | |
| 119-428, gnl|bosTau2|chr22 (36615260-36614951) | |
| 119-428, gnl|Hg17|chr3 (52060180-52059871) | |
| 119-428, gnl|Mm7|chr9 (106103085-106103394) | |
| 147-314, gnl|bosTau2|chr20 (3118921-3118754) | |
| 147-314, gnl|Hg17|chr5 (172128715-172128548) | |
| 147-314, gnl|Mm7|chr17 (24691171-24691004) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-118, gnl|bosTau2|chr22 (36618027-36617912) | |
| 3-118, gnl|canFam2|chr20 (40674232-40673996) | |
| 3-118, gnl|danRer3|chr25 (13201124-13201359) | |
| 3-118, gnl|dasNov1|scaffold_46500 (11707-11943) | |
| 3-118, gnl|echTel1|scaffold_278473 (41304-41508) | |
| 3-118, gnl|fr1|chrUn (153806589-153806825) | |
| 3-118, gnl|galGal2|chr1 (40083250-40083480) | |
| 3-118, gnl|hg17|chr3 (52062991-52063227) | |
| 3-118, gnl|Hg17|chr3 (52063113-52062998) | |
| 3-118, gnl|loxAfr1|scaffold_4301 (39035-39264) | |
| 3-118, gnl|mm7|chr9 (106100590-106100354) | |
| 3-118, gnl|Mm7|chr9 (106100466-106100581) | |
| 3-118, gnl|monDom2|scaffold_5 (71485220-71484984) | |
| 3-118, gnl|oryCun1|scaffold_192070 (41544-41751) | |
| 3-118, gnl|panTro1|chr2 (53673189-53673425) | |
| 3-118, gnl|rheMac2|chr2 (84340341-84340105) | |
| 3-118, gnl|rn3|chr8 (111532185-111531949) | |
| 3-118, gnl|tetNig1|chr11 (3581024-3580788) | |
| 3-118, gnl|xenTro1|scaffold_1092 (170218-170448) | |
| 119-428, gnl|bosTau2|chr22 (36615260-36614951) | |
| 119-428, gnl|Hg17|chr3 (52060180-52059871) | |
| 119-428, gnl|Mm7|chr9 (106103085-106103394) | |
| 147-314, gnl|bosTau2|chr20 (3118921-3118754) | |
| 147-314, gnl|Hg17|chr5 (172128715-172128548) | |
| 147-314, gnl|Mm7|chr17 (24691171-24691004) |
| Expressed library(ies): 23 entry(ies) | More info |
| Expressed library(ies): 23 entry(ies) | Help | Less info |
| liv (0.585137) | |
| pla (0.401016) | |
| lyg (0.399308) | |
| sin (0.349895) | |
| sug (0.254582) | |
| ese (0.253004) | |
| mgp (0.230681) | |
| aor (0.195274) | |
| gul (0.177588) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| nco (0.161734) | |
| csp (0.161186) | |
| mga (0.160205) | |
| fco (0.157208) | |
| cli (0.152812) | |
| isp (0.150376) | |
| fat (0.147427) | |
| pty (0.142714) | |
| nca (0.136874) | |
| kid (0.129735) | |
| pgl (0.118483) | |
| spc (0.113366) |
| Expressed library(ies): 23 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| liv (0.585137) | |
| pla (0.401016) | |
| lyg (0.399308) | |
| sin (0.349895) | |
| sug (0.254582) | |
| ese (0.253004) | |
| mgp (0.230681) | |
| aor (0.195274) | |
| gul (0.177588) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| nco (0.161734) | |
| csp (0.161186) | |
| mga (0.160205) | |
| fco (0.157208) | |
| cli (0.152812) | |
| isp (0.150376) | |
| fat (0.147427) | |
| pty (0.142714) | |
| nca (0.136874) | |
| kid (0.129735) | |
| pgl (0.118483) | |
| spc (0.113366) |