Ss1.1-Pig4-TMW8030J05.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTGTGGCACTCTCGGAGCCCCAGCCCGAGAGGAGGTTTTTCCGTCGTGGCTGGGTGACCT TTGACCGCAGCGTTAATATCAAAGAGATCTGTTGGAACCTGCAGAATATCCGACTACGGG AGTGTGAGCTGAGCCCTGGCGTGAACAGAGACCTGACTCGTCGTGTCCGCAACATCAACG GCATCACGCAGCACAAGCAGATAGTACGAAATGACATCAAGCTGGCAGCCAAGCTGATCC ATACGCTGGATGACAGGACCCAGCTCTGGGCCTCTGAGCCTGGGACACCTCCTTTGCCAA CGAGTCTGCCGTCGCAGAACCCCATCTTGAAGAACATCACTGACTACCTGATAGAGGAAG TGAGTGCTGAGGAGGAGGAGCTGCTGGGGAGCAGCGGGGGGGCCCCTCCTGAGGAGCCTC CTAAGGAAGGGAACCCGGCAGAGATCAACGTGGAGCGGGATGAGAAGCTAATCAAGGTTT TGGACAAACTCCTCCTCTATTTGCGCATTGTGCATTCCCTGGATTATTACAACACATGCG AGTACCCCAACGAGGACGAGATGCCCAACCGCTGTGGCATCATCCACGTTCGGGGGCCCA TGCCGCCCAACCGCATCAGTCATGGAGAAGTGCTAGAGTGGCAGAAGACGTTTGAGGAGA AGCTGACTCCGCTGCTGAGTGTGCGGGAATCTCTTTCAGAGGAAGAGGCCCAGAAGATGG GTCGCAAAGATCCTGAGCAGGAAGTAGAAAAGTTTGTGACCTCCAACACTCAGGAACTGG GCAAGGATAAGTGGCTATGCCCTCTCAGTGGCAAGAAATTCAAGGGCCCTGAGTTTGTGC GCAAACATATCTTCAACAAGCATGCAGAGAAAATTGAGGAAGTGAAGAAGGAGGTGGCGT TTTTTAACAACTTTCTTACGGATGCCAAGCGCCCAGCTCTGCCCGAGATCAAGCCAGCTC AGCCACCTGGCCCTGCCCAGATACTCCCCCCAGGCCTGACTCCGGGACTCCCCTACCCGC ACCAGACTCCCCAGGGCCTGATGCCCTATGGTCAGCCTCGGCCCCCCATCTTGGGCTATG GAGCTGGTGCCGTTCGCCCTGCAGTCCCCACAGGAGGGCCTCCGTACCCCCATGCTCCCT ATGGTGCTGGCCGAGGGAACTATGATGCCTTCCGAGGCCAGGGAGGTTATCCTGGGAAAC CTCGAAACAGGATGGTCCGTGGAGACCCACGGGCCATTGTGGAATACCGTGACCTGGATG CTCCAGACGACGTGGATTTCTTTTGAGCCATCTTTTCCTCACTCCTGGTATCATCTACAA ATATGACTGCTTTGTCCCATCCAACTCTGAGAAGTTTTTGTACGTTCAGCCTTACTGCCG ATAAAAGCACTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTGTGGCACTCTCGGAGCCCCAGCCCGAGAGGAGGTTTTTCCGTCGTGGCTGGGTGACCT TTGACCGCAGCGTTAATATCAAAGAGATCTGTTGGAACCTGCAGAATATCCGACTACGGG AGTGTGAGCTGAGCCCTGGCGTGAACAGAGACCTGACTCGTCGTGTCCGCAACATCAACG GCATCACGCAGCACAAGCAGATAGTACGAAATGACATCAAGCTGGCAGCCAAGCTGATCC ATACGCTGGATGACAGGACCCAGCTCTGGGCCTCTGAGCCTGGGACACCTCCTTTGCCAA CGAGTCTGCCGTCGCAGAACCCCATCTTGAAGAACATCACTGACTACCTGATAGAGGAAG TGAGTGCTGAGGAGGAGGAGCTGCTGGGGAGCAGCGGGGGGGCCCCTCCTGAGGAGCCTC CTAAGGAAGGGAACCCGGCAGAGATCAACGTGGAGCGGGATGAGAAGCTAATCAAGGTTT TGGACAAACTCCTCCTCTATTTGCGCATTGTGCATTCCCTGGATTATTACAACACATGCG AGTACCCCAACGAGGACGAGATGCCCAACCGCTGTGGCATCATCCACGTTCGGGGGCCCA TGCCGCCCAACCGCATCAGTCATGGAGAAGTGCTAGAGTGGCAGAAGACGTTTGAGGAGA AGCTGACTCCGCTGCTGAGTGTGCGGGAATCTCTTTCAGAGGAAGAGGCCCAGAAGATGG GTCGCAAAGATCCTGAGCAGGAAGTAGAAAAGTTTGTGACCTCCAACACTCAGGAACTGG GCAAGGATAAGTGGCTATGCCCTCTCAGTGGCAAGAAATTCAAGGGCCCTGAGTTTGTGC GCAAACATATCTTCAACAAGCATGCAGAGAAAATTGAGGAAGTGAAGAAGGAGGTGGCGT TTTTTAACAACTTTCTTACGGATGCCAAGCGCCCAGCTCTGCCCGAGATCAAGCCAGCTC AGCCACCTGGCCCTGCCCAGATACTCCCCCCAGGCCTGACTCCGGGACTCCCCTACCCGC ACCAGACTCCCCAGGGCCTGATGCCCTATGGTCAGCCTCGGCCCCCCATCTTGGGCTATG GAGCTGGTGCCGTTCGCCCTGCAGTCCCCACAGGAGGGCCTCCGTACCCCCATGCTCCCT ATGGTGCTGGCCGAGGGAACTATGATGCCTTCCGAGGCCAGGGAGGTTATCCTGGGAAAC CTCGAAACAGGATGGTCCGTGGAGACCCACGGGCCATTGTGGAATACCGTGACCTGGATG CTCCAGACGACGTGGATTTCTTTTGAGCCATCTTTTCCTCACTCCTGGTATCATCTACAA ATATGACTGCTTTGTCCCATCCAACTCTGAGAAGTTTTTGTACGTTCAGCCTTACTGCCG ATAAAAGCACTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 341-1322, + strand, RNAz p=0.987021 | |
| 668-787, + strand, RNAz p=0.820234 | |
| 982-1083, - strand, RNAz p=0.982507 | |
| 982-1083, - strand, RNAz p=0.734568 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 341-1322, + strand, RNAz p=0.987021 | |
| 668-787, + strand, RNAz p=0.820234 | |
| 982-1083, - strand, RNAz p=0.982507 | |
| 982-1083, - strand, RNAz p=0.734568 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 302-478, gnl|bosTau2|chr25 (32925526-32925350) | |
| 302-478, gnl|Hg17|chr7 (100129066-100129242) | |
| 302-478, gnl|Mm7|chr5 (136215782-136215606) | |
| 629-832, gnl|bosTau2|chr25 (32924953-32924750) | |
| 629-832, gnl|canFam2|chr6 (11887006-11886779) | |
| 629-832, gnl|danRer3|chr5 (16182-15957) | |
| 629-832, gnl|dasNov1|scaffold_45781 (6623-6853) | |
| 629-832, gnl|echTel1|scaffold_292955 (2340-2113) | |
| 629-832, gnl|fr1|chrUn (49622064-49621872) | |
| 629-832, gnl|hg17|chr7 (100129568-100129795) | |
| 629-832, gnl|Hg17|chr7 (100129590-100129793) | |
| 629-832, gnl|loxAfr1|scaffold_131804 (4773-5003) | |
| 629-832, gnl|mm7|chr5 (136215268-136215035) | |
| 629-832, gnl|Mm7|chr5 (136215238-136215035) | |
| 629-832, gnl|monDom2|scaffold_66 (2807808-2808048) | |
| 629-832, gnl|panTro1|chr6_random (384346-384119) | |
| 629-832, gnl|rheMac2|chr3 (48178271-48178498) | |
| 629-832, gnl|tetNig1|chrUn_random (87281751-87282061) | |
| 629-832, gnl|xenTro1|scaffold_2095 (45761-45976) | |
| 982-1083, gnl|bosTau2|chr25 (32924232-32924131) | |
| 982-1083, gnl|canFam2|chr6 (11886340-11886172) | |
| 982-1083, gnl|danRer3|chr5 (13370-13241) | |
| 982-1083, gnl|dasNov1|scaffold_45781 (7433-7607) | |
| 982-1083, gnl|echTel1|scaffold_292955 (1617-1454) | |
| 982-1083, gnl|fr1|chrUn (49621500-49621365) | |
| 982-1083, gnl|hg17|chr7 (100130256-100130427) | |
| 982-1083, gnl|Hg17|chr7 (100130314-100130415) | |
| 982-1083, gnl|loxAfr1|scaffold_99214 (5247-5084) | |
| 982-1083, gnl|mm7|chr5 (136214639-136214476) | |
| 982-1083, gnl|Mm7|chr5 (136214587-136214486) | |
| 982-1083, gnl|monDom2|scaffold_66 (2808735-2808902) | |
| 982-1083, gnl|panTro1|chr6_random (383658-383487) | |
| 982-1083, gnl|rheMac2|chr3 (48178983-48179151) | |
| 982-1083, gnl|tetNig1|chr7 (5125570-5125435) | |
| 982-1083, gnl|xenTro1|scaffold_2095 (46282-46442) | |
| 1207-1392, gnl|bosTau2|chr25 (32923799-32923611) | |
| 1207-1392, gnl|Hg17|chr7 (100130742-100130928) | |
| 1207-1392, gnl|Mm7|chr5 (136214178-136213993) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 302-478, gnl|bosTau2|chr25 (32925526-32925350) | |
| 302-478, gnl|Hg17|chr7 (100129066-100129242) | |
| 302-478, gnl|Mm7|chr5 (136215782-136215606) | |
| 629-832, gnl|bosTau2|chr25 (32924953-32924750) | |
| 629-832, gnl|canFam2|chr6 (11887006-11886779) | |
| 629-832, gnl|danRer3|chr5 (16182-15957) | |
| 629-832, gnl|dasNov1|scaffold_45781 (6623-6853) | |
| 629-832, gnl|echTel1|scaffold_292955 (2340-2113) | |
| 629-832, gnl|fr1|chrUn (49622064-49621872) | |
| 629-832, gnl|hg17|chr7 (100129568-100129795) | |
| 629-832, gnl|Hg17|chr7 (100129590-100129793) | |
| 629-832, gnl|loxAfr1|scaffold_131804 (4773-5003) | |
| 629-832, gnl|mm7|chr5 (136215268-136215035) | |
| 629-832, gnl|Mm7|chr5 (136215238-136215035) | |
| 629-832, gnl|monDom2|scaffold_66 (2807808-2808048) | |
| 629-832, gnl|panTro1|chr6_random (384346-384119) | |
| 629-832, gnl|rheMac2|chr3 (48178271-48178498) | |
| 629-832, gnl|tetNig1|chrUn_random (87281751-87282061) | |
| 629-832, gnl|xenTro1|scaffold_2095 (45761-45976) | |
| 982-1083, gnl|bosTau2|chr25 (32924232-32924131) | |
| 982-1083, gnl|canFam2|chr6 (11886340-11886172) | |
| 982-1083, gnl|danRer3|chr5 (13370-13241) | |
| 982-1083, gnl|dasNov1|scaffold_45781 (7433-7607) | |
| 982-1083, gnl|echTel1|scaffold_292955 (1617-1454) | |
| 982-1083, gnl|fr1|chrUn (49621500-49621365) | |
| 982-1083, gnl|hg17|chr7 (100130256-100130427) | |
| 982-1083, gnl|Hg17|chr7 (100130314-100130415) | |
| 982-1083, gnl|loxAfr1|scaffold_99214 (5247-5084) | |
| 982-1083, gnl|mm7|chr5 (136214639-136214476) | |
| 982-1083, gnl|Mm7|chr5 (136214587-136214486) | |
| 982-1083, gnl|monDom2|scaffold_66 (2808735-2808902) | |
| 982-1083, gnl|panTro1|chr6_random (383658-383487) | |
| 982-1083, gnl|rheMac2|chr3 (48178983-48179151) | |
| 982-1083, gnl|tetNig1|chr7 (5125570-5125435) | |
| 982-1083, gnl|xenTro1|scaffold_2095 (46282-46442) | |
| 1207-1392, gnl|bosTau2|chr25 (32923799-32923611) | |
| 1207-1392, gnl|Hg17|chr7 (100130742-100130928) | |
| 1207-1392, gnl|Mm7|chr5 (136214178-136213993) |
| Expressed library(ies): 17 entry(ies) | More info |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
| fty (0.527519) | |
| elu (0.385356) | |
| hlv (0.278513) | |
| fcc (0.197785) | |
| eje (0.197668) | |
| nlu (0.191681) | |
| nje (0.16592) | |
| csp (0.161186) | |
| nca (0.136874) | |
| ssp (0.13552) | |
| nmm (0.132802) | |
| eep (0.122564) | |
| cly (0.120642) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| nbm (0.0993246) |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fty (0.527519) | |
| elu (0.385356) | |
| hlv (0.278513) | |
| fcc (0.197785) | |
| eje (0.197668) | |
| nlu (0.191681) | |
| nje (0.16592) | |
| csp (0.161186) | |
| nca (0.136874) | |
| ssp (0.13552) | |
| nmm (0.132802) | |
| eep (0.122564) | |
| cly (0.120642) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| nbm (0.0993246) |