Ss1.1-Pig4-TMW8030J07.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAAGAATGAGATGGTGGGAGAGAAGGGCCTGGCACCCGAGGTGGCCGACCGCATTGGGGA CTACGTCCAACAGCACGGCGGGGTATCCCTGGTGGAACAGCTACTCCAGGATCCTAAACT GTCCCAAAACAAACAGGCCTTGGAGGGCCTGGGAGACCTGAAGCTGCTATTTGAATACCT GACCCTGTTTGGCGTCGCTGACAAGATCTCCTTCGACCTGAGCCTTGCTCGAGGGCTGGA CTACTATACCGGGGTGATCTATGAGGCGGTGCTGTTGCAGCCCCCTGCCCAAGCTGGAGA AGAACCCCTGGGTGTGGGCAGTGTGGCCGCTGGAGGGCGCTATGATGGGCTGGTGGGCAT GTTTGACCCCAAAGGGCGCAAGGTGCCGTGCGTGGGACTCAGCATTGGGGTAGAGCGGAT CTTCTCCATCGTCGAGCAGAGGCTGGAGGCGTTGGAGGAGAAGGTCCGGACCACAGAGAC ACAGGTGCTTGTGGCATCTGCACAGAAGAAGCTGCTGGAGGAGAGACTGAAGCTGGTCTC AGAGCTCTGGGATGCTGGCATCAAGGCAGAGCTGCTCTACAAGAAGAACCCCAAGTTACT GAACCAGCTGCAGTACTGTGAGGAGGCGGGCATCCCACTGGTGGCCATCATCGGTGAGCA GGAACTCAAGGACGGGGTCGTCAAGCTGCGCTCAGTGACCAGCAGGGAAGAGGTGGACGT CCGCAGGGAAGACCTCGTGGAGGAAATCAAAAGGAGAACGAGCCAGCCCTCTTGCACCTG CTGAGTAAAGCCAACCACCCGAGGAACGTGGGACTGGCACGACTTACAGCGAAAACAAAA CTCTGCAAAAGTACTGAATTCAACAGCCTGGCACACTTCTGTTCCAGCAGGAAGACCCGA AGAGTGGTCAGAACGGAGACATTTTTATTACGATTATTTTATTGATAATCACAGGCACGA AGGGCCCGCTGCTACACCATTTTCCACATGAGGCCCTGGGGGCTTAGCCCTGCGTGTGCG CCTGAGGCCCGACCTGGTCTCCGCCGCCGCAGGGCCCACAGCCAGCCGCCTAAGGTCCAA TAAAATGCCTCAACCACTGGAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAAGAATGAGATGGTGGGAGAGAAGGGCCTGGCACCCGAGGTGGCCGACCGCATTGGGGA CTACGTCCAACAGCACGGCGGGGTATCCCTGGTGGAACAGCTACTCCAGGATCCTAAACT GTCCCAAAACAAACAGGCCTTGGAGGGCCTGGGAGACCTGAAGCTGCTATTTGAATACCT GACCCTGTTTGGCGTCGCTGACAAGATCTCCTTCGACCTGAGCCTTGCTCGAGGGCTGGA CTACTATACCGGGGTGATCTATGAGGCGGTGCTGTTGCAGCCCCCTGCCCAAGCTGGAGA AGAACCCCTGGGTGTGGGCAGTGTGGCCGCTGGAGGGCGCTATGATGGGCTGGTGGGCAT GTTTGACCCCAAAGGGCGCAAGGTGCCGTGCGTGGGACTCAGCATTGGGGTAGAGCGGAT CTTCTCCATCGTCGAGCAGAGGCTGGAGGCGTTGGAGGAGAAGGTCCGGACCACAGAGAC ACAGGTGCTTGTGGCATCTGCACAGAAGAAGCTGCTGGAGGAGAGACTGAAGCTGGTCTC AGAGCTCTGGGATGCTGGCATCAAGGCAGAGCTGCTCTACAAGAAGAACCCCAAGTTACT GAACCAGCTGCAGTACTGTGAGGAGGCGGGCATCCCACTGGTGGCCATCATCGGTGAGCA GGAACTCAAGGACGGGGTCGTCAAGCTGCGCTCAGTGACCAGCAGGGAAGAGGTGGACGT CCGCAGGGAAGACCTCGTGGAGGAAATCAAAAGGAGAACGAGCCAGCCCTCTTGCACCTG CTGAGTAAAGCCAACCACCCGAGGAACGTGGGACTGGCACGACTTACAGCGAAAACAAAA CTCTGCAAAAGTACTGAATTCAACAGCCTGGCACACTTCTGTTCCAGCAGGAAGACCCGA AGAGTGGTCAGAACGGAGACATTTTTATTACGATTATTTTATTGATAATCACAGGCACGA AGGGCCCGCTGCTACACCATTTTCCACATGAGGCCCTGGGGGCTTAGCCCTGCGTGTGCG CCTGAGGCCCGACCTGGTCTCCGCCGCCGCAGGGCCCACAGCCAGCCGCCTAAGGTCCAA TAAAATGCCTCAACCACTGGAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 243-402, + strand, RNAz p=0.795639 | |
| 243-402, - strand, RNAz p=0.795639 | |
| 243-362, + strand, RNAz p=0.666364 | |
| 243-362, - strand, RNAz p=0.666364 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 243-402, + strand, RNAz p=0.795639 | |
| 243-402, - strand, RNAz p=0.795639 | |
| 243-362, + strand, RNAz p=0.666364 | |
| 243-362, - strand, RNAz p=0.666364 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 204-449, gnl|bosTau2|chr7 (30477724-30477969) | |
| 204-449, gnl|canFam2|chr2 (38680539-38680712) | |
| 204-449, gnl|danRer3|chr14 (3632525-3632728) | |
| 204-449, gnl|dasNov1|scaffold_44110 (3711-3884) | |
| 204-449, gnl|echTel1|scaffold_237844 (6965-6789) | |
| 204-449, gnl|fr1|chrUn (193329715-193329512) | |
| 204-449, gnl|galGal2|chr13 (244233-244075) | |
| 204-449, gnl|hg17|chr5 (140036418-140036591) | |
| 204-449, gnl|Hg17|chr5 (140036667-140036422) | |
| 204-449, gnl|loxAfr1|scaffold_26901 (15817-15990) | |
| 204-449, gnl|mm7|chr18 (37146278-37146451) | |
| 204-449, gnl|Mm7|chr18 (37146527-37146282) | |
| 204-449, gnl|monDom2|scaffold_6 (68127506-68127333) | |
| 204-449, gnl|oryCun1|scaffold_212741 (23274-23447) | |
| 204-449, gnl|panTro1|chr4 (146654917-146655090) | |
| 204-449, gnl|rheMac2|chr6 (137098753-137098581) | |
| 204-449, gnl|rn3|chr18 (29497554-29497727) | |
| 204-449, gnl|tetNig1|chrUn_random (103419574-103419774) | |
| 204-449, gnl|xenTro1|scaffold_336 (1056214-1056388) | |
| 711-1024, gnl|bosTau2|chr7 (30480284-30480601) | |
| 711-1024, gnl|Hg17|chr5 (140034099-140033787) | |
| 711-1024, gnl|Mm7|chr18 (37143156-37142825) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 204-449, gnl|bosTau2|chr7 (30477724-30477969) | |
| 204-449, gnl|canFam2|chr2 (38680539-38680712) | |
| 204-449, gnl|danRer3|chr14 (3632525-3632728) | |
| 204-449, gnl|dasNov1|scaffold_44110 (3711-3884) | |
| 204-449, gnl|echTel1|scaffold_237844 (6965-6789) | |
| 204-449, gnl|fr1|chrUn (193329715-193329512) | |
| 204-449, gnl|galGal2|chr13 (244233-244075) | |
| 204-449, gnl|hg17|chr5 (140036418-140036591) | |
| 204-449, gnl|Hg17|chr5 (140036667-140036422) | |
| 204-449, gnl|loxAfr1|scaffold_26901 (15817-15990) | |
| 204-449, gnl|mm7|chr18 (37146278-37146451) | |
| 204-449, gnl|Mm7|chr18 (37146527-37146282) | |
| 204-449, gnl|monDom2|scaffold_6 (68127506-68127333) | |
| 204-449, gnl|oryCun1|scaffold_212741 (23274-23447) | |
| 204-449, gnl|panTro1|chr4 (146654917-146655090) | |
| 204-449, gnl|rheMac2|chr6 (137098753-137098581) | |
| 204-449, gnl|rn3|chr18 (29497554-29497727) | |
| 204-449, gnl|tetNig1|chrUn_random (103419574-103419774) | |
| 204-449, gnl|xenTro1|scaffold_336 (1056214-1056388) | |
| 711-1024, gnl|bosTau2|chr7 (30480284-30480601) | |
| 711-1024, gnl|Hg17|chr5 (140034099-140033787) | |
| 711-1024, gnl|Mm7|chr18 (37143156-37142825) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| ecc (0.23007) | |
| liv (0.146284) | |
| cly (0.120642) | |
| eru (0.120048) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ecc (0.23007) | |
| liv (0.146284) | |
| cly (0.120642) | |
| eru (0.120048) |