Non-Coding RNA Search

Ss1.1-Pig4-TMW8030J09.3

Sequence:


               
               CTTTTAAGCTCCGGCGGGGTGTCCCAGCCTCCGGCCACCTCGCTGGCCCGACAGCGGATT
GTCCAGGAGGAGAGGGAGCGGGCCGTGCAGGCCTACAGGGCGCTGAAGAAGCTGCAGCAG
CAGCAGCGGCTGGGGACCCAGTCCCCACGGCCACCCCGCCCCGAGCCCGGGAAGAAGCCG
CAGACGCGTGTGTGATGGCGACCCAGCAGAGCGCCTGCCCCTGGGCCAGGGTGAGCCGGC
GGGTGGCCTGTGGTTGAGGGCCCCTTCCTCGGAGCTCACCCCGGGCCTCAGGCGGGGCGA
GGGCTTCGGTCTTCTCCCTTCTCCCTGAGGACTGCTCTGTGGTGAGTGACCGCCAGCAGG
GCCACGTCTCCTTCAGGCCGTCGTTCTCCTGAGCCTGTAGATGGGGCTGGCTCTGGGTGA
TACGATACGCGGCCTGCGTTGTCCCCCTGAGCCTGGTGTCACGTGAAACTTTGCTCTGGA
CACTCAGATCCAGCCTGGAACAGAAGCCAGGGCCGCTTTAGGGAGAGCCAATCCCATAAT
TCTGTCCCTAAATGCCAGTTCATTGTGGACAGTGTCGAGTCAGGTCGACTGAGCCCATAA
CTGAAGCTCTGGTGGCTGTGACAGAGCAGCACAGCCGTCAGCATCCAGTCACCTGGACCA
GTTTGTGGCACTGCTGTCATGGTCCCCACAGACACAGGCAGAGCCACCTCCGCTCAGCTG
CAGTCTGAGCCACCTGCACTGCGGTCTGGGGAGGCCTCCCCGGTCCAGAGTGGTTTGACC
ACGAGGACTTTGTTGTGGTCGGAGGGCCGTGTGAGTTCTTGCCGAGGAGGGCCTGGCGAG
GTTGGACTCTCCTGCTGGCCCCGAGGGAGGGAGCGTCTGGCTTTATTGTCCTGCCCGGGT
GTGGGGTTCAAGCAAGGGGCTGAGGCTTCTGGGCTGTGAGCAGCCAAGCATTGGGTGGGG
GGGCTGCTCACAGCTCTCTTGGGAAGGACAGCCGGTGGGCTCCCTCCTCGCCCTCCCCAG
CTCAGGGCCCTCTAGCCAGCAGAGCCGGCCTGGGCAGTGCAGGGGGTGCCCGGCCCCAGT
GCTGGCCGCAGCGGCCCTGCAGAGAGCATGGAGTTGTGTGGGTCTGTTTGCCCTTCCCCA
AGTTGGCATTCTGTGTCAGGAAGTTTATCTTCCAATTAAAAGATTTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTTAAGCTCCGGCGGGGTGTCCCAGCCTCCGGCCACCTCGCTGGCCCGACAGCGGATT
GTCCAGGAGGAGAGGGAGCGGGCCGTGCAGGCCTACAGGGCGCTGAAGAAGCTGCAGCAG
CAGCAGCGGCTGGGGACCCAGTCCCCACGGCCACCCCGCCCCGAGCCCGGGAAGAAGCCG
CAGACGCGTGTGTGATGGCGACCCAGCAGAGCGCCTGCCCCTGGGCCAGGGTGAGCCGGC
GGGTGGCCTGTGGTTGAGGGCCCCTTCCTCGGAGCTCACCCCGGGCCTCAGGCGGGGCGA
GGGCTTCGGTCTTCTCCCTTCTCCCTGAGGACTGCTCTGTGGTGAGTGACCGCCAGCAGG
GCCACGTCTCCTTCAGGCCGTCGTTCTCCTGAGCCTGTAGATGGGGCTGGCTCTGGGTGA
TACGATACGCGGCCTGCGTTGTCCCCCTGAGCCTGGTGTCACGTGAAACTTTGCTCTGGA
CACTCAGATCCAGCCTGGAACAGAAGCCAGGGCCGCTTTAGGGAGAGCCAATCCCATAAT
TCTGTCCCTAAATGCCAGTTCATTGTGGACAGTGTCGAGTCAGGTCGACTGAGCCCATAA
CTGAAGCTCTGGTGGCTGTGACAGAGCAGCACAGCCGTCAGCATCCAGTCACCTGGACCA
GTTTGTGGCACTGCTGTCATGGTCCCCACAGACACAGGCAGAGCCACCTCCGCTCAGCTG
CAGTCTGAGCCACCTGCACTGCGGTCTGGGGAGGCCTCCCCGGTCCAGAGTGGTTTGACC
ACGAGGACTTTGTTGTGGTCGGAGGGCCGTGTGAGTTCTTGCCGAGGAGGGCCTGGCGAG
GTTGGACTCTCCTGCTGGCCCCGAGGGAGGGAGCGTCTGGCTTTATTGTCCTGCCCGGGT
GTGGGGTTCAAGCAAGGGGCTGAGGCTTCTGGGCTGTGAGCAGCCAAGCATTGGGTGGGG
GGGCTGCTCACAGCTCTCTTGGGAAGGACAGCCGGTGGGCTCCCTCCTCGCCCTCCCCAG
CTCAGGGCCCTCTAGCCAGCAGAGCCGGCCTGGGCAGTGCAGGGGGTGCCCGGCCCCAGT
GCTGGCCGCAGCGGCCCTGCAGAGAGCATGGAGTTGTGTGGGTCTGTTTGCCCTTCCCCA
AGTTGGCATTCTGTGTCAGGAAGTTTATCTTCCAATTAAAAGATTTAA

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

Help | Less info


               
               1-581, gnl|bosTau2|chr19 (45264917-45265493)
               

               
               1-581, gnl|Hg17|chr17 (77249960-77250481)
               

               
               1-581, gnl|Mm7|chr11 (120571343-120571880)
               


               
               806-1188, gnl|bosTau2|chr19 (45265811-45266209)
               

               
               806-1188, gnl|Hg17|chr17 (77250958-77251341)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-581, gnl|bosTau2|chr19 (45264917-45265493)
               

               
               1-581, gnl|Hg17|chr17 (77249960-77250481)
               

               
               1-581, gnl|Mm7|chr11 (120571343-120571880)
               


               
               806-1188, gnl|bosTau2|chr19 (45265811-45266209)
               

               
               806-1188, gnl|Hg17|chr17 (77250958-77251341)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

Help | Less info


               
               pty (0.285429)
               

               
               eli (0.151814)
               

               
               cag (0.151194)
               

               
               pla (0.133672)
               

               
               med (0.116252)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pty (0.285429)
               

               
               eli (0.151814)
               

               
               cag (0.151194)
               

               
               pla (0.133672)
               

               
               med (0.116252)

	1-581, gnl\|bosTau2\|chr19 (45264917-45265493)
	1-581, gnl\|Hg17\|chr17 (77249960-77250481)
	1-581, gnl\|Mm7\|chr11 (120571343-120571880)

	806-1188, gnl\|bosTau2\|chr19 (45265811-45266209)
	806-1188, gnl\|Hg17\|chr17 (77250958-77251341)

	pty (0.285429)
	eli (0.151814)
	cag (0.151194)
	pla (0.133672)
	med (0.116252)