Ss1.1-Pig4-TMW8030J11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGTGCGGAGGAGCCGATCCTAAGGCAAGGTTGACGCCGGGACTGTCCAGGGAGGCGCAGC GTGGCGGGAGCCCGAGCCAGAGCAGCCCCAGAGCTGAAGCAGCCGTCGTCGCCGTCCGCG GAGCCCAGCCGAACCGGCCATGGCGTTGTCGATGCCGCTGAACGGATTGAAGGAGGAGGA CAAAGAGCCCATCATCGAGCTCTTCGTCAAGGCTGGCAGTGATGGTGAGAGCATAGGAAA CTGCCCCTTTTCTCAGAGGCTCTTCATGATTCTTTGGCTCAAAGGAGTTGTGTTTAGTGT AACAACTGTTGACCTGAAAAGGAAGCCTGCTGACCTGCAGAACTTGGCTCCAGGGACCCA CCCACCATTTATAACTTTCAACAATGAGGTCAAAACGGATGTAAATAAGATTGAAGAATT TCTTGAAGAAGTCTTGTGCCCTCCGAAGTACTTAAAGCTTTCACCAAAACACCCAGAGTC AAATACTGCTGGAATGGACATCTTTGCCAAATTCTCTGCATATATCAAGAACTCAAGGCC GGAGGCTAATGAAGCATTGGAGAGGGGTCTCTTGAAAACACTGCAGAAGCTGGATGAATA TCTGAATTCTCCCCTCCCTGATGAAATTGATGAGAATAGTATGGAGGACATTAAGTTTTC CACACGGAAATTTCTGGATGGCAATGAAATGACACTAGCTGATTGCAACCTGCTACCCAA ACTTCATATCGTCAAGGTGGTGGCCAAAAAATATCGCAACTTTGATATTCCAAAAGGAAT GACTGGCATCTGGAGATACTTAACCAATGCTTATAGTAGGGATGAATTTACCAATACCTG CCCCAGCGATAAGGAGGTTGAAATAGCATATAGTGATGTAGCCAAAAGACTTACCAAATA AAATAGCACTTATGAGAGCAATGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGTGCGGAGGAGCCGATCCTAAGGCAAGGTTGACGCCGGGACTGTCCAGGGAGGCGCAGC GTGGCGGGAGCCCGAGCCAGAGCAGCCCCAGAGCTGAAGCAGCCGTCGTCGCCGTCCGCG GAGCCCAGCCGAACCGGCCATGGCGTTGTCGATGCCGCTGAACGGATTGAAGGAGGAGGA CAAAGAGCCCATCATCGAGCTCTTCGTCAAGGCTGGCAGTGATGGTGAGAGCATAGGAAA CTGCCCCTTTTCTCAGAGGCTCTTCATGATTCTTTGGCTCAAAGGAGTTGTGTTTAGTGT AACAACTGTTGACCTGAAAAGGAAGCCTGCTGACCTGCAGAACTTGGCTCCAGGGACCCA CCCACCATTTATAACTTTCAACAATGAGGTCAAAACGGATGTAAATAAGATTGAAGAATT TCTTGAAGAAGTCTTGTGCCCTCCGAAGTACTTAAAGCTTTCACCAAAACACCCAGAGTC AAATACTGCTGGAATGGACATCTTTGCCAAATTCTCTGCATATATCAAGAACTCAAGGCC GGAGGCTAATGAAGCATTGGAGAGGGGTCTCTTGAAAACACTGCAGAAGCTGGATGAATA TCTGAATTCTCCCCTCCCTGATGAAATTGATGAGAATAGTATGGAGGACATTAAGTTTTC CACACGGAAATTTCTGGATGGCAATGAAATGACACTAGCTGATTGCAACCTGCTACCCAA ACTTCATATCGTCAAGGTGGTGGCCAAAAAATATCGCAACTTTGATATTCCAAAAGGAAT GACTGGCATCTGGAGATACTTAACCAATGCTTATAGTAGGGATGAATTTACCAATACCTG CCCCAGCGATAAGGAGGTTGAAATAGCATATAGTGATGTAGCCAAAAGACTTACCAAATA AAATAGCACTTATGAGAGCAATGT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 302-449, gnl|bosTau2|chrX (8168045-8167898) | |
| 302-449, gnl|canFam2|chr2 (77819589-77819463) | |
| 302-449, gnl|danRer3|chr17 (2085977-2085853) | |
| 302-449, gnl|dasNov1|scaffold_4020 (36950-36832) | |
| 302-449, gnl|echTel1|scaffold_187944 (9299-9183) | |
| 302-449, gnl|fr1|chrUn (68506417-68506291) | |
| 302-449, gnl|galGal2|chr23 (2123482-2123373) | |
| 302-449, gnl|Hg17|chr1 (24885871-24886018) | |
| 302-449, gnl|hg17|chrX (40692688-40692814) | |
| 302-449, gnl|loxAfr1|scaffold_32332 (16123-16001) | |
| 302-449, gnl|mm7|chr3 (63319453-63319332) | |
| 302-449, gnl|Mm7|chr4 (134604606-134604459) | |
| 302-449, gnl|monDom2|scaffold_3 (98156166-98156260) | |
| 302-449, gnl|oryCun1|scaffold_200644 (58703-58576) | |
| 302-449, gnl|panTro1|chrX (41944344-41944470) | |
| 302-449, gnl|rheMac2|chrX (38834433-38834559) | |
| 302-449, gnl|rn3|chr5 (154026187-154026061) | |
| 302-449, gnl|tetNig1|chr10 (3145951-3146077) | |
| 302-449, gnl|xenTro1|scaffold_1078 (13280-13171) | |
| 553-738, gnl|bosTau2|chrX (8145645-8145460) | |
| 553-738, gnl|canFam2|chr2 (77800985-77801132) | |
| 553-738, gnl|danRer3|chr17 (2084180-2084327) | |
| 553-738, gnl|dasNov1|scaffold_16633 (40600-40460) | |
| 553-738, gnl|echTel1|scaffold_187944 (8720-8886) | |
| 553-738, gnl|fr1|chrUn (87964296-87964142) | |
| 553-738, gnl|galGal2|chr23 (2121519-2121666) | |
| 553-738, gnl|Hg17|chr1 (24911655-24911840) | |
| 553-738, gnl|hg17|chr19 (6513617-6513780) | |
| 553-738, gnl|loxAfr1|scaffold_56304 (6638-6775) | |
| 553-738, gnl|mm7|chr3 (63319033-63319193) | |
| 553-738, gnl|Mm7|chr4 (134597128-134596943) | |
| 553-738, gnl|monDom2|scaffold_91 (1707665-1707505) | |
| 553-738, gnl|oryCun1|scaffold_200644 (58288-58424) | |
| 553-738, gnl|panTro1|chr20 (6887304-6887467) | |
| 553-738, gnl|rheMac2|chr19 (6475543-6475706) | |
| 553-738, gnl|rn3|chr6 (91720046-91720206) | |
| 553-738, gnl|tetNig1|chr10 (3147190-3147043) | |
| 553-738, gnl|xenTro1|scaffold_439 (329394-329554) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 302-449, gnl|bosTau2|chrX (8168045-8167898) | |
| 302-449, gnl|canFam2|chr2 (77819589-77819463) | |
| 302-449, gnl|danRer3|chr17 (2085977-2085853) | |
| 302-449, gnl|dasNov1|scaffold_4020 (36950-36832) | |
| 302-449, gnl|echTel1|scaffold_187944 (9299-9183) | |
| 302-449, gnl|fr1|chrUn (68506417-68506291) | |
| 302-449, gnl|galGal2|chr23 (2123482-2123373) | |
| 302-449, gnl|Hg17|chr1 (24885871-24886018) | |
| 302-449, gnl|hg17|chrX (40692688-40692814) | |
| 302-449, gnl|loxAfr1|scaffold_32332 (16123-16001) | |
| 302-449, gnl|mm7|chr3 (63319453-63319332) | |
| 302-449, gnl|Mm7|chr4 (134604606-134604459) | |
| 302-449, gnl|monDom2|scaffold_3 (98156166-98156260) | |
| 302-449, gnl|oryCun1|scaffold_200644 (58703-58576) | |
| 302-449, gnl|panTro1|chrX (41944344-41944470) | |
| 302-449, gnl|rheMac2|chrX (38834433-38834559) | |
| 302-449, gnl|rn3|chr5 (154026187-154026061) | |
| 302-449, gnl|tetNig1|chr10 (3145951-3146077) | |
| 302-449, gnl|xenTro1|scaffold_1078 (13280-13171) | |
| 553-738, gnl|bosTau2|chrX (8145645-8145460) | |
| 553-738, gnl|canFam2|chr2 (77800985-77801132) | |
| 553-738, gnl|danRer3|chr17 (2084180-2084327) | |
| 553-738, gnl|dasNov1|scaffold_16633 (40600-40460) | |
| 553-738, gnl|echTel1|scaffold_187944 (8720-8886) | |
| 553-738, gnl|fr1|chrUn (87964296-87964142) | |
| 553-738, gnl|galGal2|chr23 (2121519-2121666) | |
| 553-738, gnl|Hg17|chr1 (24911655-24911840) | |
| 553-738, gnl|hg17|chr19 (6513617-6513780) | |
| 553-738, gnl|loxAfr1|scaffold_56304 (6638-6775) | |
| 553-738, gnl|mm7|chr3 (63319033-63319193) | |
| 553-738, gnl|Mm7|chr4 (134597128-134596943) | |
| 553-738, gnl|monDom2|scaffold_91 (1707665-1707505) | |
| 553-738, gnl|oryCun1|scaffold_200644 (58288-58424) | |
| 553-738, gnl|panTro1|chr20 (6887304-6887467) | |
| 553-738, gnl|rheMac2|chr19 (6475543-6475706) | |
| 553-738, gnl|rn3|chr6 (91720046-91720206) | |
| 553-738, gnl|tetNig1|chr10 (3147190-3147043) | |
| 553-738, gnl|xenTro1|scaffold_439 (329394-329554) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| hea (0.204499) | |
| ski (0.146735) | |
| liv (0.146284) | |
| pty (0.142714) | |
| ova (0.129132) | |
| eep (0.122564) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hea (0.204499) | |
| ski (0.146735) | |
| liv (0.146284) | |
| pty (0.142714) | |
| ova (0.129132) | |
| eep (0.122564) |