Non-Coding RNA Search

Ss1.1-Pig4-TMW8030J12.5

Sequence:


               
               CCCTTTCGTATCGGCGGCGCGGTGAGTGTTGCGGCCGCCGCCGCCCGGGGCGCCAGGACC
CTCGGACCTGCCCGCGACGCACGGGACGCCGCGATCGCCTCACCGCCGCCCCGCACGCTC
CGGTCGCGCTCGGACTTGCCGTCATGGATGCTCTGTCGGAGGCAAATGGCACTTTTGCCT
TAACCCTTCTGAAAAAGCTGGGTGAAGACAACTCCAAAAATGTGTTTTTCTCACCCATGA
GCCTCTCCTCCACGCTGGCCATGGTCTTTATGGGGGCAGCAGGCAACACCGCAACTCAGA
TGTCCCAGGCACTTTCTCTAAGCAAAAGCAGCAGCAAAGGTGGAGATGTCCACCAGGGTT
TCCAGAACCTTCTCACCGAAGTCAACAGGACTGGCACACAGTACTTGCTCAGAACCGCCA
ACAGGCTCTTCGGAGAGAAGTCTTACGGTTTCCTCCCATCTTTCAAAGATTCCTGCCGCA
AATTCTACCAAGCGGAGATGGAAGAGCTGGACTTTGTCAACACGACAGAGGAGTCCCGGA
AACACATAAACACCTGGGTAGCCCAGAAGACAGAAGGTAAAATTACAGACTTGCTGTCTC
CTGATTCAGTCAACTCCATGACTCGTCTAGTTCTCGTGAACGCCATCTACTTCAAAGGAA
ACTGGGATAATCAGTTTAACAAAGAGCACACCAAGGAAAGGCCGTTTAAAGTCAGCAAGA
ATGTGAAGAAACCTGTGCAAATGATGTTTAAGAAGTCTACCTTTAAAATTACCTACATAG
GAGAAATATTCACCCAAATTCTGCTGCTTCCCTATGTCGGCAAAGAGCTGAACATGATCA
TCATGCTGCCGGATGAAAACACCGATCTGAAAACGGTGGAGAAGGAACTTACTTACGAGA
GGTTCGTCGAGTGGACGAGGCCGGACATGATGGATGCCGAGGAGGTGGAGGTCTTCCTCC
CCAGGTTTAAGCTGGAGGAGGACTACGACATGGAGGGCGTCCTCCGCACACTGGGCGTGA
CGGACGCCTTCGAGGCGGCCAGGGCAGACTTCTCTGGAATGTCATCCCAGAGAGACCTGT
ACCTGTCCAAGGTCGTGCACAAGTCCTTTGTGGAGGTCAACGAGGAGGGCACGGAGGCAG
CGGCTGCCACCGCCGCCATCATGATGATGCGCTGCGTCAGAATCAGCCCCAGGTTCTGTG
CCGACCACCCTTTCCTTTTCTTTATCCAGCACAGCAAAACCGGCGGGGTTCTGTTCTGTG
GCCGGTTCTGCTCCCCGTAAGGAAGTGCTGGGCTCTGCTGGCAGCCCCTCTATCTCCCAC
CGACCTTTTCCTTGACACTCTGATGTGTCTGTAACCCAAAGTGACCTTTGGCGACAGTCC
AAAAATAAAGGGCCTGATCGTGAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCTTTCGTATCGGCGGCGCGGTGAGTGTTGCGGCCGCCGCCGCCCGGGGCGCCAGGACC
CTCGGACCTGCCCGCGACGCACGGGACGCCGCGATCGCCTCACCGCCGCCCCGCACGCTC
CGGTCGCGCTCGGACTTGCCGTCATGGATGCTCTGTCGGAGGCAAATGGCACTTTTGCCT
TAACCCTTCTGAAAAAGCTGGGTGAAGACAACTCCAAAAATGTGTTTTTCTCACCCATGA
GCCTCTCCTCCACGCTGGCCATGGTCTTTATGGGGGCAGCAGGCAACACCGCAACTCAGA
TGTCCCAGGCACTTTCTCTAAGCAAAAGCAGCAGCAAAGGTGGAGATGTCCACCAGGGTT
TCCAGAACCTTCTCACCGAAGTCAACAGGACTGGCACACAGTACTTGCTCAGAACCGCCA
ACAGGCTCTTCGGAGAGAAGTCTTACGGTTTCCTCCCATCTTTCAAAGATTCCTGCCGCA
AATTCTACCAAGCGGAGATGGAAGAGCTGGACTTTGTCAACACGACAGAGGAGTCCCGGA
AACACATAAACACCTGGGTAGCCCAGAAGACAGAAGGTAAAATTACAGACTTGCTGTCTC
CTGATTCAGTCAACTCCATGACTCGTCTAGTTCTCGTGAACGCCATCTACTTCAAAGGAA
ACTGGGATAATCAGTTTAACAAAGAGCACACCAAGGAAAGGCCGTTTAAAGTCAGCAAGA
ATGTGAAGAAACCTGTGCAAATGATGTTTAAGAAGTCTACCTTTAAAATTACCTACATAG
GAGAAATATTCACCCAAATTCTGCTGCTTCCCTATGTCGGCAAAGAGCTGAACATGATCA
TCATGCTGCCGGATGAAAACACCGATCTGAAAACGGTGGAGAAGGAACTTACTTACGAGA
GGTTCGTCGAGTGGACGAGGCCGGACATGATGGATGCCGAGGAGGTGGAGGTCTTCCTCC
CCAGGTTTAAGCTGGAGGAGGACTACGACATGGAGGGCGTCCTCCGCACACTGGGCGTGA
CGGACGCCTTCGAGGCGGCCAGGGCAGACTTCTCTGGAATGTCATCCCAGAGAGACCTGT
ACCTGTCCAAGGTCGTGCACAAGTCCTTTGTGGAGGTCAACGAGGAGGGCACGGAGGCAG
CGGCTGCCACCGCCGCCATCATGATGATGCGCTGCGTCAGAATCAGCCCCAGGTTCTGTG
CCGACCACCCTTTCCTTTTCTTTATCCAGCACAGCAAAACCGGCGGGGTTCTGTTCTGTG
GCCGGTTCTGCTCCCCGTAAGGAAGTGCTGGGCTCTGCTGGCAGCCCCTCTATCTCCCAC
CGACCTTTTCCTTGACACTCTGATGTGTCTGTAACCCAAAGTGACCTTTGGCGACAGTCC
AAAAATAAAGGGCCTGATCGTGAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|27807517|ref|NP_777214.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|27807517|ref|NP_777214.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               130-289, + strand, RNAz p=0.75057

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               130-289, + strand, RNAz p=0.75057

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC001394, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC001394, +

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               130-323, gnl|bosTau2|chr23 (31683216-31683023)
               

               
               130-323, gnl|Hg17|chr6 (2904579-2904396)
               

               
               130-323, gnl|Mm7|chr13 (33349185-33349004)
               


               
               453-578, gnl|bosTau2|chr23 (31702423-31702297)
               

               
               453-578, gnl|Hg17|chr6 (2899949-2899823)
               

               
               453-578, gnl|Mm7|chr8 (39539355-39539236)
               


               
               875-1403, gnl|bosTau2|chr18 (35975459-35974950)
               

               
               875-1403, gnl|Hg17|chr6 (2893933-2893401)
               

               
               875-1403, gnl|Mm7|chr13 (33335978-33335475)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               130-323, gnl|bosTau2|chr23 (31683216-31683023)
               

               
               130-323, gnl|Hg17|chr6 (2904579-2904396)
               

               
               130-323, gnl|Mm7|chr13 (33349185-33349004)
               


               
               453-578, gnl|bosTau2|chr23 (31702423-31702297)
               

               
               453-578, gnl|Hg17|chr6 (2899949-2899823)
               

               
               453-578, gnl|Mm7|chr8 (39539355-39539236)
               


               
               875-1403, gnl|bosTau2|chr18 (35975459-35974950)
               

               
               875-1403, gnl|Hg17|chr6 (2893933-2893401)
               

               
               875-1403, gnl|Mm7|chr13 (33335978-33335475)

Expressed library(ies): 18 entry(ies)

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Expressed library(ies): 18 entry(ies)

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               eye (0.511509)
               

               
               pla (0.401016)
               

               
               jej (0.395687)
               

               
               col (0.390016)
               

               
               ill (0.351185)
               

               
               duo (0.345602)
               

               
               nco (0.323468)
               

               
               cty (0.20816)
               

               
               eje (0.197668)
               

               
               nep (0.183925)
               

               
               ton (0.1755)
               

               
               csp (0.161186)
               

               
               ste (0.135208)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               nbm (0.0993246)

Expressed library(ies): 18 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.511509)
               

               
               pla (0.401016)
               

               
               jej (0.395687)
               

               
               col (0.390016)
               

               
               ill (0.351185)
               

               
               duo (0.345602)
               

               
               nco (0.323468)
               

               
               cty (0.20816)
               

               
               eje (0.197668)
               

               
               nep (0.183925)
               

               
               ton (0.1755)
               

               
               csp (0.161186)
               

               
               ste (0.135208)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               nbm (0.0993246)

	130-323, gnl\|bosTau2\|chr23 (31683216-31683023)
	130-323, gnl\|Hg17\|chr6 (2904579-2904396)
	130-323, gnl\|Mm7\|chr13 (33349185-33349004)

	453-578, gnl\|bosTau2\|chr23 (31702423-31702297)
	453-578, gnl\|Hg17\|chr6 (2899949-2899823)
	453-578, gnl\|Mm7\|chr8 (39539355-39539236)

	875-1403, gnl\|bosTau2\|chr18 (35975459-35974950)
	875-1403, gnl\|Hg17\|chr6 (2893933-2893401)
	875-1403, gnl\|Mm7\|chr13 (33335978-33335475)

	eye (0.511509)
	pla (0.401016)
	jej (0.395687)
	col (0.390016)
	ill (0.351185)
	duo (0.345602)
	nco (0.323468)
	cty (0.20816)
	eje (0.197668)
	nep (0.183925)
	ton (0.1755)
	csp (0.161186)
	ste (0.135208)
	cov (0.132153)
	ese (0.126502)
	eru (0.120048)
	med (0.116252)
	nbm (0.0993246)