Ss1.1-Pig4-TMW8030J14.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGAAAGGGACCTATCCACGTGGATAATGTGAAGTGCACAGGCAATGAGAGGTCCCTGGCT GACTGTATCAAACAAGATATTGGAAAACACAATTGCCGCCACAGTGAAGATGCAGGAGTT ATTTGTGATTATTTCGGCAAGAAAGCATCAGGTAACAGTAATAAAGAGTCCCTCTCATCT GTTTGTGGTTTGAGATTACTGCATCGTCGGCAAAAGAGAATCATTGGTGGGAAAAATTCT TTAAGGGGCGGTTGGCCTTGGCAAGTGTCCCTCCGACTGAAGTCATCTCATGGAAGTGGC AGCCTGCTCTGCGGGGCCACACTCCTGAGCAGCTGCTGGGTCCTTACAGCAGCACACTGC TTCAAGAGGTATGGCAACAGCACGAGGAACTATGCTGTTCGAGTTGGGGATTATCATACT CTCGTGCCAGAAGAGTTTGAAGAAGAAATCGGAGTTCAGCAGATTGTGATTCACAGGCAG TATCGACCGGACAGCAGTGACTACGACATTGCCCTAGTTAGGTTACAGGGTCCAGAAGAG CAATGTGCCAGATTCAGCAGCCACGTTTTGCCAGCCTGTTTGCCGCTCTGGAGAGAGAGG CCACAGAAAACAGCCTCCAATTGTTACATAACCGGATGGGGCGACACAGGACGAGCCTAT TCCAGAACTCTGCAACAAGCAGCCATCCCCTTACTTCCCAAGAGGTTTTGTGAAGAGCGT TATAAGGGTCGATTTACAGGAAGGATGCTCTGTGCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGAAAGGGACCTATCCACGTGGATAATGTGAAGTGCACAGGCAATGAGAGGTCCCTGGCT GACTGTATCAAACAAGATATTGGAAAACACAATTGCCGCCACAGTGAAGATGCAGGAGTT ATTTGTGATTATTTCGGCAAGAAAGCATCAGGTAACAGTAATAAAGAGTCCCTCTCATCT GTTTGTGGTTTGAGATTACTGCATCGTCGGCAAAAGAGAATCATTGGTGGGAAAAATTCT TTAAGGGGCGGTTGGCCTTGGCAAGTGTCCCTCCGACTGAAGTCATCTCATGGAAGTGGC AGCCTGCTCTGCGGGGCCACACTCCTGAGCAGCTGCTGGGTCCTTACAGCAGCACACTGC TTCAAGAGGTATGGCAACAGCACGAGGAACTATGCTGTTCGAGTTGGGGATTATCATACT CTCGTGCCAGAAGAGTTTGAAGAAGAAATCGGAGTTCAGCAGATTGTGATTCACAGGCAG TATCGACCGGACAGCAGTGACTACGACATTGCCCTAGTTAGGTTACAGGGTCCAGAAGAG CAATGTGCCAGATTCAGCAGCCACGTTTTGCCAGCCTGTTTGCCGCTCTGGAGAGAGAGG CCACAGAAAACAGCCTCCAATTGTTACATAACCGGATGGGGCGACACAGGACGAGCCTAT TCCAGAACTCTGCAACAAGCAGCCATCCCCTTACTTCCCAAGAGGTTTTGTGAAGAGCGT TATAAGGGTCGATTTACAGGAAGGATGCTCTGTGCT |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 5-123, + strand, RNAz p=0.574417 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 5-123, + strand, RNAz p=0.574417 |
| Aligned organism(s): 21 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
| 5-166, gnl|bosTau2|chr6 (2120171-2120010) | |
| 5-166, gnl|Hg17|chr4 (119577652-119577491) | |
| 5-166, gnl|Mm7|chr3 (123325630-123325791) | |
| 367-650, gnl|bosTau2|chr6 (2100033-2099750) | |
| 367-650, gnl|canFam2|chr32 (40433906-40434270) | |
| 367-650, gnl|danRer3|chr1 (16137135-16136811) | |
| 367-650, gnl|dasNov1|scaffold_24069 (2673-3056) | |
| 367-650, gnl|echTel1|scaffold_319117 (6894-7270) | |
| 367-650, gnl|fr1|chrUn (263161693-263161336) | |
| 367-650, gnl|galGal2|chr4 (55579577-55579280) | |
| 367-650, gnl|hg17|chr4 (119561585-119561947) | |
| 367-650, gnl|Hg17|chr4 (119561871-119561588) | |
| 367-650, gnl|loxAfr1|scaffold_17249 (55863-56239) | |
| 367-650, gnl|mm7|chr3 (123344206-123343826) | |
| 367-650, gnl|Mm7|chr3 (123343905-123344188) | |
| 367-650, gnl|monDom2|scaffold_32 (8814181-8813840) | |
| 367-650, gnl|panTro1|chr3 (136283918-136284280) | |
| 367-650, gnl|rheMac2|chr5 (111128160-111128526) | |
| 367-650, gnl|rn3|chr2 (220216579-220216201) | |
| 367-650, gnl|tetNig1|chrUn_random (92867309-92867609) | |
| 367-650, gnl|xenTro1|scaffold_310 (184904-185266) |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 5-166, gnl|bosTau2|chr6 (2120171-2120010) | |
| 5-166, gnl|Hg17|chr4 (119577652-119577491) | |
| 5-166, gnl|Mm7|chr3 (123325630-123325791) | |
| 367-650, gnl|bosTau2|chr6 (2100033-2099750) | |
| 367-650, gnl|canFam2|chr32 (40433906-40434270) | |
| 367-650, gnl|danRer3|chr1 (16137135-16136811) | |
| 367-650, gnl|dasNov1|scaffold_24069 (2673-3056) | |
| 367-650, gnl|echTel1|scaffold_319117 (6894-7270) | |
| 367-650, gnl|fr1|chrUn (263161693-263161336) | |
| 367-650, gnl|galGal2|chr4 (55579577-55579280) | |
| 367-650, gnl|hg17|chr4 (119561585-119561947) | |
| 367-650, gnl|Hg17|chr4 (119561871-119561588) | |
| 367-650, gnl|loxAfr1|scaffold_17249 (55863-56239) | |
| 367-650, gnl|mm7|chr3 (123344206-123343826) | |
| 367-650, gnl|Mm7|chr3 (123343905-123344188) | |
| 367-650, gnl|monDom2|scaffold_32 (8814181-8813840) | |
| 367-650, gnl|panTro1|chr3 (136283918-136284280) | |
| 367-650, gnl|rheMac2|chr5 (111128160-111128526) | |
| 367-650, gnl|rn3|chr2 (220216579-220216201) | |
| 367-650, gnl|tetNig1|chrUn_random (92867309-92867609) | |
| 367-650, gnl|xenTro1|scaffold_310 (184904-185266) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| amn (0.417711) | |
| med (0.116252) |