Non-Coding RNA Search

Ss1.1-Pig4-TMW8030J21.3

Sequence:


               
               GTTTTACTGTATTTTAGTTGCATAGGTTTCCATTATATTTGTGGTTGCTTTCTGCTAAAT
TTGGCCAAAGATGATTGTTCACCAACTAAAAATGCCTCTGCCACTTGGAATTCTGTGCTG
ATTTTCTGATTGGAATGTAGTGATCTTTACAGATTAAAATCTTTACAAAGGCATAAGAAG
GCAAGAATTTCTTAAAAGTGCAATAGATTTTCAAGCGTATTGTGCCTTGTTCTAAAACTT
TATTAAGTAGGTGCACTTGACAGTATTGAGGTCATTTGTTACGGTGCTATTTCAATTAGT
ATAGGTTTAGATTCTTGTACATTTGACCCATAACTTTTTACAAAGTACTTATTTTATTGC
ACATTCAGAGAATTTTATATATATATATAGATAGATATTTGTCTTGTGTGCGTGTCCTTA
GGCTTCCAATCTTTTTTTTGTCTTTTGGAGATTGTTGAACGCAGCTTGCAAGAACTAGAT
GCTAAAATTTTATTTGGGACCATGGAATGAGAGTTGAGAGGAAATCTTATTTGCACACGA
CAGATTTTAGATACTTTTTGCTGCTAGTTTGTTTAGTATTTATTGAACATTTTGACAAAT
ATTTATTTTTGTAAGCCTAAAAGTGATTCTTTGAAAGTTTAAAGAAACTTGACCAAAAGA
CAGTACAAAAACACTGGCACTTGAATGTTGAATGTCACCGTATGTGAAATATATTTCAGG
GTAGTGTGAGCTTTTAACGTTAAATCCTATTAAACTTGAGTGAAATTAAGCAGACCCAGC
ATTAGCAATGTCCGTAGCTATAACTGACAAAATTTAAGAGAAAATTGGCAACTTGAAGTT
AAAACATGCCAAGGTTTCGATACATGTGTCTTAAAATACTAATGAAACACTTCTAAACAC
TGATGTGAGGTCTCCATGTTTTAAAGTGTTCTTTGGAGTTTTGTTTAGTTACATGTTTTA
TTTTGTTTAGATTTCAGTGTCTGGCATATTGCAGTTCTCAAACATGTGGTTGGTTATCTT
TCTATATTGCCATAATCAGTGACTTTTACATTCAGTTTTGTCACCCAGCAATATCAGTAA
ATAAGAATGGACTTAAATTTGCTGAATGTAGACATTAAACCTCAAGTCACTGTAAGTTTA
GTTATTGCTTATGTATTAGTTTTAGATGCTAGCACTGCATGTGCTATGTTTATTCTGATT
TTACTAAAATAAAGAATTGAACCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTTACTGTATTTTAGTTGCATAGGTTTCCATTATATTTGTGGTTGCTTTCTGCTAAAT
TTGGCCAAAGATGATTGTTCACCAACTAAAAATGCCTCTGCCACTTGGAATTCTGTGCTG
ATTTTCTGATTGGAATGTAGTGATCTTTACAGATTAAAATCTTTACAAAGGCATAAGAAG
GCAAGAATTTCTTAAAAGTGCAATAGATTTTCAAGCGTATTGTGCCTTGTTCTAAAACTT
TATTAAGTAGGTGCACTTGACAGTATTGAGGTCATTTGTTACGGTGCTATTTCAATTAGT
ATAGGTTTAGATTCTTGTACATTTGACCCATAACTTTTTACAAAGTACTTATTTTATTGC
ACATTCAGAGAATTTTATATATATATATAGATAGATATTTGTCTTGTGTGCGTGTCCTTA
GGCTTCCAATCTTTTTTTTGTCTTTTGGAGATTGTTGAACGCAGCTTGCAAGAACTAGAT
GCTAAAATTTTATTTGGGACCATGGAATGAGAGTTGAGAGGAAATCTTATTTGCACACGA
CAGATTTTAGATACTTTTTGCTGCTAGTTTGTTTAGTATTTATTGAACATTTTGACAAAT
ATTTATTTTTGTAAGCCTAAAAGTGATTCTTTGAAAGTTTAAAGAAACTTGACCAAAAGA
CAGTACAAAAACACTGGCACTTGAATGTTGAATGTCACCGTATGTGAAATATATTTCAGG
GTAGTGTGAGCTTTTAACGTTAAATCCTATTAAACTTGAGTGAAATTAAGCAGACCCAGC
ATTAGCAATGTCCGTAGCTATAACTGACAAAATTTAAGAGAAAATTGGCAACTTGAAGTT
AAAACATGCCAAGGTTTCGATACATGTGTCTTAAAATACTAATGAAACACTTCTAAACAC
TGATGTGAGGTCTCCATGTTTTAAAGTGTTCTTTGGAGTTTTGTTTAGTTACATGTTTTA
TTTTGTTTAGATTTCAGTGTCTGGCATATTGCAGTTCTCAAACATGTGGTTGGTTATCTT
TCTATATTGCCATAATCAGTGACTTTTACATTCAGTTTTGTCACCCAGCAATATCAGTAA
ATAAGAATGGACTTAAATTTGCTGAATGTAGACATTAAACCTCAAGTCACTGTAAGTTTA
GTTATTGCTTATGTATTAGTTTTAGATGCTAGCACTGCATGTGCTATGTTTATTCTGATT
TTACTAAAATAAAGAATTGAACCC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-1055, gnl|bosTau2|chrX (28790554-28789501)
               

               
               1-1055, gnl|Hg17|chrX (40964443-40965504)
               

               
               1-1055, gnl|Mm7|chrX (11725882-11726931)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1055, gnl|bosTau2|chrX (28790554-28789501)
               

               
               1-1055, gnl|Hg17|chrX (40964443-40965504)
               

               
               1-1055, gnl|Mm7|chrX (11725882-11726931)

Expressed library(ies): 12 entry(ies)

More info

Expressed library(ies): 12 entry(ies)

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               tra (0.61546)
               

               
               liv (0.585137)
               

               
               tes (0.207814)
               

               
               sag (0.182715)
               

               
               fty (0.17584)
               

               
               lin (0.145603)
               

               
               pty (0.142714)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               ecc (0.115035)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tra (0.61546)
               

               
               liv (0.585137)
               

               
               tes (0.207814)
               

               
               sag (0.182715)
               

               
               fty (0.17584)
               

               
               lin (0.145603)
               

               
               pty (0.142714)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               ecc (0.115035)

	1-1055, gnl\|bosTau2\|chrX (28790554-28789501)
	1-1055, gnl\|Hg17\|chrX (40964443-40965504)
	1-1055, gnl\|Mm7\|chrX (11725882-11726931)

	tra (0.61546)
	liv (0.585137)
	tes (0.207814)
	sag (0.182715)
	fty (0.17584)
	lin (0.145603)
	pty (0.142714)
	ste (0.135208)
	pla (0.133672)
	kid (0.129735)
	ret (0.128733)
	ecc (0.115035)