Ss1.1-Pig4-TMW8030K03.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGAAGAACTGCTTCTCCTGCCAGCCGGGCACCTTCCACTGTGGCACCAACCTGTGCATC TTCGAGACGTGGCGCTGCGATGGCCAGGAGGACTGTCAGGATGGCAGCGATGAGCATGGC TGCCTGGCGGCCGTGCCCCGCAAAGTCATCACCGCCGCGCTCATCGGCAGCCTGGTCTGT GGCCTGCTGCTCGTCATTGCCCTGGGCTGCGCCTTCAAGCTCTATTCCCTGCGCACGCAG GAGTACAGGGCCTTTGAGACCCAGATGACCCGCCTGGAGGCTGAGTTTGTGCGGCGGGAG GCACCCCCATCCTACGGTCAGCTCATCGCGCAGGGCCTCATTCCACCAGTTGAGGACTTT CCCGTCTACAGCGCATCCCAGGCCTCGGTGCTACAGAACCTTCGCACGGCCATGCGGAGA CAGATGCGCCGGCACGCCTCCCGCCGCGGGCCCTCCCGCCGTCGCCTCGGCCGCCTCTGG AACCGGCTCTTTCACCGGCCTCGGGCGCCCCGCGGACAGATCCCGTTGCTGACGGCCGCA CGCACCTCTCAGACGGTGCTGGGTGATGGGCTCCTCCAGCCTGCACCAGGGGCTGCCTTG GACCCCCCGGCGCCCCTTACGGACACAGGCAGCCCAGGGGCAGCCGGGGAGGGGCCCCCC AGTGCCCCCATCCACGCCCCAGAGGTGGGACCTTCGGTGCCGCCTCCCTTGGGCCTGCGG GACCCGGAGTGCAGGCCAGTGGACAAGGACAGAAAGGCCAGCAGGGACCCTTTGCTGGAC AATTCAGCCCCCGTGGACATGCCTCGGGAGCCCTGCTCGGCCCAGGACCCTCATCCTCCC GCCTCCACTGCCAGCAGCACCCTGGGCCCCCACCCACCCGAGCCACTGGGTGTCTGCCGG AGCCCCCCGCCACCCTGCTCCCCAACGTTGGAGGCCAGTGATGACGAGGCCCTGCTGGTC TGCTGACCCGCTGGACACGCTGGTGACCGCCACAGCCCCGCTTTGTAACCAGGGAATACA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGAAGAACTGCTTCTCCTGCCAGCCGGGCACCTTCCACTGTGGCACCAACCTGTGCATC TTCGAGACGTGGCGCTGCGATGGCCAGGAGGACTGTCAGGATGGCAGCGATGAGCATGGC TGCCTGGCGGCCGTGCCCCGCAAAGTCATCACCGCCGCGCTCATCGGCAGCCTGGTCTGT GGCCTGCTGCTCGTCATTGCCCTGGGCTGCGCCTTCAAGCTCTATTCCCTGCGCACGCAG GAGTACAGGGCCTTTGAGACCCAGATGACCCGCCTGGAGGCTGAGTTTGTGCGGCGGGAG GCACCCCCATCCTACGGTCAGCTCATCGCGCAGGGCCTCATTCCACCAGTTGAGGACTTT CCCGTCTACAGCGCATCCCAGGCCTCGGTGCTACAGAACCTTCGCACGGCCATGCGGAGA CAGATGCGCCGGCACGCCTCCCGCCGCGGGCCCTCCCGCCGTCGCCTCGGCCGCCTCTGG AACCGGCTCTTTCACCGGCCTCGGGCGCCCCGCGGACAGATCCCGTTGCTGACGGCCGCA CGCACCTCTCAGACGGTGCTGGGTGATGGGCTCCTCCAGCCTGCACCAGGGGCTGCCTTG GACCCCCCGGCGCCCCTTACGGACACAGGCAGCCCAGGGGCAGCCGGGGAGGGGCCCCCC AGTGCCCCCATCCACGCCCCAGAGGTGGGACCTTCGGTGCCGCCTCCCTTGGGCCTGCGG GACCCGGAGTGCAGGCCAGTGGACAAGGACAGAAAGGCCAGCAGGGACCCTTTGCTGGAC AATTCAGCCCCCGTGGACATGCCTCGGGAGCCCTGCTCGGCCCAGGACCCTCATCCTCCC GCCTCCACTGCCAGCAGCACCCTGGGCCCCCACCCACCCGAGCCACTGGGTGTCTGCCGG AGCCCCCCGCCACCCTGCTCCCCAACGTTGGAGGCCAGTGATGACGAGGCCCTGCTGGTC TGCTGACCCGCTGGACACGCTGGTGACCGCCACAGCCCCGCTTTGTAACCAGGGAATACA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 617-730, - strand, RNAz p=0.736109 | |
| 851-970, - strand, RNAz p=0.712941 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 617-730, - strand, RNAz p=0.736109 | |
| 851-970, - strand, RNAz p=0.712941 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 18-249, gnl|bosTau2|chr10 (14142516-14142285) | |
| 18-249, gnl|canFam2|chr8 (6216025-6216242) | |
| 18-249, gnl|danRer3|chr19 (38932860-38932643) | |
| 18-249, gnl|dasNov1|scaffold_148220 (5148-5365) | |
| 18-249, gnl|echTel1|scaffold_170716 (651-434) | |
| 18-249, gnl|fr1|chrUn (39605821-39606118) | |
| 18-249, gnl|galGal2|chr11 (10277371-10277588) | |
| 18-249, gnl|hg17|chr14 (22415154-22415371) | |
| 18-249, gnl|Hg17|chr14 (22415191-22415422) | |
| 18-249, gnl|loxAfr1|scaffold_79380 (11958-12175) | |
| 18-249, gnl|mm7|chr14 (49336022-49336239) | |
| 18-249, gnl|Mm7|chr14 (49336059-49336290) | |
| 18-249, gnl|monDom2|scaffold_12 (26976875-26976658) | |
| 18-249, gnl|oryCun1|scaffold_135819 (5965-6182) | |
| 18-249, gnl|panTro1|chr15 (21378940-21379156) | |
| 18-249, gnl|rheMac2|chr7 (85691082-85691299) | |
| 18-249, gnl|rn3|chr15 (32547560-32547777) | |
| 18-249, gnl|tetNig1|chrUn_random (21329686-21329378) | |
| 18-249, gnl|xenTro1|scaffold_963 (262877-263094) | |
| 378-1020, gnl|bosTau2|chr18 (36394742-36395387) | |
| 378-1020, gnl|Hg17|chr19 (38389730-38390374) | |
| 378-1020, gnl|Mm7|chr7 (32092386-32091742) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 18-249, gnl|bosTau2|chr10 (14142516-14142285) | |
| 18-249, gnl|canFam2|chr8 (6216025-6216242) | |
| 18-249, gnl|danRer3|chr19 (38932860-38932643) | |
| 18-249, gnl|dasNov1|scaffold_148220 (5148-5365) | |
| 18-249, gnl|echTel1|scaffold_170716 (651-434) | |
| 18-249, gnl|fr1|chrUn (39605821-39606118) | |
| 18-249, gnl|galGal2|chr11 (10277371-10277588) | |
| 18-249, gnl|hg17|chr14 (22415154-22415371) | |
| 18-249, gnl|Hg17|chr14 (22415191-22415422) | |
| 18-249, gnl|loxAfr1|scaffold_79380 (11958-12175) | |
| 18-249, gnl|mm7|chr14 (49336022-49336239) | |
| 18-249, gnl|Mm7|chr14 (49336059-49336290) | |
| 18-249, gnl|monDom2|scaffold_12 (26976875-26976658) | |
| 18-249, gnl|oryCun1|scaffold_135819 (5965-6182) | |
| 18-249, gnl|panTro1|chr15 (21378940-21379156) | |
| 18-249, gnl|rheMac2|chr7 (85691082-85691299) | |
| 18-249, gnl|rn3|chr15 (32547560-32547777) | |
| 18-249, gnl|tetNig1|chrUn_random (21329686-21329378) | |
| 18-249, gnl|xenTro1|scaffold_963 (262877-263094) | |
| 378-1020, gnl|bosTau2|chr18 (36394742-36395387) | |
| 378-1020, gnl|Hg17|chr19 (38389730-38390374) | |
| 378-1020, gnl|Mm7|chr7 (32092386-32091742) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ute (0.132784) |