Non-Coding RNA Search

Ss1.1-Pig4-TMW8030K06.3

Sequence:


               
               AATGTAATACCAACACCTTGTGCTGTCACCGTTGGGAGCTTTTAGACAGAAGATCTCTAC
AGAGGTAGAAGTGGAGTATGAAGTTCATTGTGATTCTTTTGGGGGCTGGGGGCAGGTCCC
TTTGGCTGAAAGCCAAATGCTCTCAGTCATGACCTTTCTCTGGTGTAATTTCCATGAGAC
AATGGTAGAAGCCCTACCTCTTTGGTAAGACTGCCTTGTCTCAGGGTGGGAGGTGAGAGG
GCAGGGTGAAGAAGGGTTTGAATAGAGCATTTAGGGTGGCTCCTTTGAGAACTTGAAAGT
TCCCCTTTTCCCTTTATGAACTGCGCTATAAACATGGGGCCTTGCTAAAAATGAGATCCA
GTGAGGACCAAACTAGTAATGGGAGTATGCTTAGCTTTAATTTGGATTGATTAGGTTTAA
TAGTATTAAGTGGCACAACTTTTTAAAAGTGATACTGCAATTCGTATTTATTTCCAACGG
GCCCTCACGCTGAACTTTGGGTTTGGTTGGAGTCAAAGCCAGTTTGCTTTAAAGTTGAAT
TCATTCTGAGGCTTGATACCCCCACCCCCTTGTCCATTGGAGCCCTACTTCTCCAGGTCA
GGATACTGTCTGTTTGGCACCCAACTAACAATTAAGAGTAGGCTATAAGGGAAGATTGTC
AATAGTCTGTGTGGCAAGAAAAGCCACAGTCATTTTGCCTTTGCACTTTGGATACTGAAA
TCTTCCTGTGGAATAGCCACATCTAGATAAATATGAGCTTTTTCTTCTATTAAAATTATT
TCCAGTATCTATCAAAATGCTTTCTCCTATAGAATGTTTCTAACCCATAGTGGCCCTTGT
CTGTAAAACTGTGTTTGGAATAACATTTGGAAAAAAGTAAATAGTTTTTTCAAGACAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATGTAATACCAACACCTTGTGCTGTCACCGTTGGGAGCTTTTAGACAGAAGATCTCTAC
AGAGGTAGAAGTGGAGTATGAAGTTCATTGTGATTCTTTTGGGGGCTGGGGGCAGGTCCC
TTTGGCTGAAAGCCAAATGCTCTCAGTCATGACCTTTCTCTGGTGTAATTTCCATGAGAC
AATGGTAGAAGCCCTACCTCTTTGGTAAGACTGCCTTGTCTCAGGGTGGGAGGTGAGAGG
GCAGGGTGAAGAAGGGTTTGAATAGAGCATTTAGGGTGGCTCCTTTGAGAACTTGAAAGT
TCCCCTTTTCCCTTTATGAACTGCGCTATAAACATGGGGCCTTGCTAAAAATGAGATCCA
GTGAGGACCAAACTAGTAATGGGAGTATGCTTAGCTTTAATTTGGATTGATTAGGTTTAA
TAGTATTAAGTGGCACAACTTTTTAAAAGTGATACTGCAATTCGTATTTATTTCCAACGG
GCCCTCACGCTGAACTTTGGGTTTGGTTGGAGTCAAAGCCAGTTTGCTTTAAAGTTGAAT
TCATTCTGAGGCTTGATACCCCCACCCCCTTGTCCATTGGAGCCCTACTTCTCCAGGTCA
GGATACTGTCTGTTTGGCACCCAACTAACAATTAAGAGTAGGCTATAAGGGAAGATTGTC
AATAGTCTGTGTGGCAAGAAAAGCCACAGTCATTTTGCCTTTGCACTTTGGATACTGAAA
TCTTCCTGTGGAATAGCCACATCTAGATAAATATGAGCTTTTTCTTCTATTAAAATTATT
TCCAGTATCTATCAAAATGCTTTCTCCTATAGAATGTTTCTAACCCATAGTGGCCCTTGT
CTGTAAAACTGTGTTTGGAATAACATTTGGAAAAAAGTAAATAGTTTTTTCAAGACAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               116-336, - strand, RNAz p=0.995736
               

               
               649-804, + strand, RNAz p=0.786866

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               116-336, - strand, RNAz p=0.995736
               

               
               649-804, + strand, RNAz p=0.786866

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_013277, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_013277, +

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-893, gnl|bosTau2|chr5 (24859530-24860420)
               

               
               1-893, gnl|Hg17|chr12 (48670135-48669218)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-893, gnl|bosTau2|chr5 (24859530-24860420)
               

               
               1-893, gnl|Hg17|chr12 (48670135-48669218)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               fce (0.271592)
               

               
               spc (0.226732)
               

               
               hea (0.204499)
               

               
               cli (0.152812)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               med (0.116252)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               spc (0.226732)
               

               
               hea (0.204499)
               

               
               cli (0.152812)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               med (0.116252)

	116-336, - strand, RNAz p=0.995736
	649-804, + strand, RNAz p=0.786866

	1-893, gnl\|bosTau2\|chr5 (24859530-24860420)
	1-893, gnl\|Hg17\|chr12 (48670135-48669218)

	fce (0.271592)
	spc (0.226732)
	hea (0.204499)
	cli (0.152812)
	kid (0.129735)
	ova (0.129132)
	ese (0.126502)
	med (0.116252)