Non-Coding RNA Search

Ss1.1-Pig4-TMW8030K08.5

Sequence:


               
               GACTGCATGTAAGAATTCACACTGGAGAAAAACCCTATGAATGTAACCAGTGCTTTCATG
TTTTCCGCACTAGTTGTAACCTCAAAAGCCACAAGAGAATTCATACACGGGAGAATCATC
ATGAATGTAATCAGTGTGGCAAAGCCTTCAGCACCAGGTCCTCCCTTACTGGGCACAATA
GTATTCATACAGGAGAGAAACCTTATGAATGCAATGATTGTGGGAAAACCTTTAGGAAGA
GCTCCTATCTGACCCAGCATATGAGAACTCATACTGGAGAAAAACCTTATGAGTGTAATC
AGTGTGGAAAATCCTTCAGCAGTAGCTTTTCTCTTACTGTGCACAAGAGAATTCATACTG
GTGAGAAACCCTATGAATGCAGTAACTGTGGGAAAGCTTTTAATAATCTCTCAGCTGTTA
AGAAACATGTAAGAACTCACACTGGAGAAAAACCCTATGAATGTAATCATTGTGGAAAAT
CTTTCACCACTAACTCTTACCTTTCTGTGCACAAGAGAATCCATAATAGGTGGATTTGAC
TACAATAACTAGAAACGCATTCATTGATTTCATATCTCTCAGACAACGTGTGATAACTCA
CACTAGATGTATGCGTTATCTATTGCTGTATAACACATTTTCCTTCTAAACATAGTGGCT
TTAAACAACAAACATTGATTATCTATAGGTCAGGAATTTGGAACAGCTTAGCTGTGTAGT
TCTGACTCAGTATTTCTCTTGAGGTTCTAGTCAAGATGTCAATGGCTGCTACAGTCATCT
GTGTCTTTACTGCTGAACAGTCCACTTCCAAAATGGGTCACTCACATGTCTGGCAAGTTA
TTGCAGGTTGCTGGCAAGGAATCTTCATTTTTTTTTTTTTTACCATGTAGGACTCTCCAC
AGGGCTGAGTATCTTTATGATGTAGAAGCAGTTTCCTCCCAGAGCATTTGATATAAAGAT
GCATTGTCTTTGGTGACCTAGCCTTAGAAGGACATATCATTTCCGTATTTGACACAGACC
AGTCCTGACACAATGTGGGAAAAGACCACACAAAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACTGCATGTAAGAATTCACACTGGAGAAAAACCCTATGAATGTAACCAGTGCTTTCATG
TTTTCCGCACTAGTTGTAACCTCAAAAGCCACAAGAGAATTCATACACGGGAGAATCATC
ATGAATGTAATCAGTGTGGCAAAGCCTTCAGCACCAGGTCCTCCCTTACTGGGCACAATA
GTATTCATACAGGAGAGAAACCTTATGAATGCAATGATTGTGGGAAAACCTTTAGGAAGA
GCTCCTATCTGACCCAGCATATGAGAACTCATACTGGAGAAAAACCTTATGAGTGTAATC
AGTGTGGAAAATCCTTCAGCAGTAGCTTTTCTCTTACTGTGCACAAGAGAATTCATACTG
GTGAGAAACCCTATGAATGCAGTAACTGTGGGAAAGCTTTTAATAATCTCTCAGCTGTTA
AGAAACATGTAAGAACTCACACTGGAGAAAAACCCTATGAATGTAATCATTGTGGAAAAT
CTTTCACCACTAACTCTTACCTTTCTGTGCACAAGAGAATCCATAATAGGTGGATTTGAC
TACAATAACTAGAAACGCATTCATTGATTTCATATCTCTCAGACAACGTGTGATAACTCA
CACTAGATGTATGCGTTATCTATTGCTGTATAACACATTTTCCTTCTAAACATAGTGGCT
TTAAACAACAAACATTGATTATCTATAGGTCAGGAATTTGGAACAGCTTAGCTGTGTAGT
TCTGACTCAGTATTTCTCTTGAGGTTCTAGTCAAGATGTCAATGGCTGCTACAGTCATCT
GTGTCTTTACTGCTGAACAGTCCACTTCCAAAATGGGTCACTCACATGTCTGGCAAGTTA
TTGCAGGTTGCTGGCAAGGAATCTTCATTTTTTTTTTTTTTACCATGTAGGACTCTCCAC
AGGGCTGAGTATCTTTATGATGTAGAAGCAGTTTCCTCCCAGAGCATTTGATATAAAGAT
GCATTGTCTTTGGTGACCTAGCCTTAGAAGGACATATCATTTCCGTATTTGACACAGACC
AGTCCTGACACAATGTGGGAAAAGACCACACAAAAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|12838398|dbj|BAB24189.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|12838398|dbj|BAB24189.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               316-435, - strand, RNAz p=0.835884

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               316-435, - strand, RNAz p=0.835884

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               1-532, gnl|bosTau2|chr18 (42985079-42984549)
               

               
               1-532, gnl|Hg17|chr19 (49044584-49045038)
               

               
               1-532, gnl|Mm7|chr7 (26981414-26980884)
               


               
               4-530, gnl|bosTau2|chr10 (8996785-8996259)
               

               
               4-530, gnl|Hg17|chr19 (42818590-42817980)
               

               
               4-530, gnl|Mm7|chr2 (127310216-127309690)
               


               
               608-860, gnl|bosTau2|chr12 (39743253-39743000)
               


               
               648-828, gnl|bosTau2|chr10 (38288874-38288690)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-532, gnl|bosTau2|chr18 (42985079-42984549)
               

               
               1-532, gnl|Hg17|chr19 (49044584-49045038)
               

               
               1-532, gnl|Mm7|chr7 (26981414-26980884)
               


               
               4-530, gnl|bosTau2|chr10 (8996785-8996259)
               

               
               4-530, gnl|Hg17|chr19 (42818590-42817980)
               

               
               4-530, gnl|Mm7|chr2 (127310216-127309690)
               


               
               608-860, gnl|bosTau2|chr12 (39743253-39743000)
               


               
               648-828, gnl|bosTau2|chr10 (38288874-38288690)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ese (0.126502)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ese (0.126502)

	1-532, gnl\|bosTau2\|chr18 (42985079-42984549)
	1-532, gnl\|Hg17\|chr19 (49044584-49045038)
	1-532, gnl\|Mm7\|chr7 (26981414-26980884)

	4-530, gnl\|bosTau2\|chr10 (8996785-8996259)
	4-530, gnl\|Hg17\|chr19 (42818590-42817980)
	4-530, gnl\|Mm7\|chr2 (127310216-127309690)

	608-860, gnl\|bosTau2\|chr12 (39743253-39743000)

	648-828, gnl\|bosTau2\|chr10 (38288874-38288690)