Ss1.1-Pig4-TMW8030K12.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCATGATCCGATAGATCTGCAGACCAAGGAACTTAGAGAAACAAATTCCATGGTGGAAGA ATTTATGTTACTTGCCAATATCTCTGTTGCAAAAAAAATCCATGAAGAATTTTCTGAGCA TGCTCTGCTTCGAAAACATCCTGCTCCTCCTCCATCAAATTATGAAATTCTTGTTAAGGC AGCTAAATCCAAGAATTTGGAAATTAAAACCGATACAGCCAAGGCTCTGGCTGACTCCCT GGACCGGGTGGATTCGCCTATTTTCCCATATCTAAATACCCTGTTAAGGATATTAGCCAC CCGCTGTATGATGCAAGCTGTGTACTTCTGCTCTGGAATGGATAATGACTTTCATCACTA TGGCTTAGCATCCCCAATATACACACATTTTACCTCACCCATCCGAAGATACGCAGATAT CATTGTTCATCGTTTGTTGGCTGTGGCCATCGGGGCTGACTGTACGTACCCGGAGTTGAC AGACAAGCACAAGCTTGCAGATTTATGTAAAAATCTCAATTTCCGGCACAAAATGGCGCA ATATGCTCAGCGCGCATCAGTGGCTTTTCATACCCAGTTATTCTTCAAAAGCAAAGGAAT AGTAAGTGAAGAAGCTTATATTCTGTTTGTGAGAAAGAATGCTATTGTGGTTTTGATTCC AAAGTATGGCTTAGAAGGTACAGTGTTTTTTGAAGAAAAGGACAAACCAAAGCCACGACT TATTTATGATGATGAGGTACCATCTCTTAAAATAGAAGATACAGTGTTTCACATATTTGA TAAAGTTAAAGTGAGAATCATGCTAGACTCATCTAATCTTCAGCATCAGAAAATCCGAAT GTTGCTGGTAGAACCACAGATACCAGGAATAAGTGTTCCTACTGATACCTCAAACATGGA CAATAGTGAACCAGAGAGAAAGAAGAAGAAGCTACAAAAATAGCTACAGTCAGCAACAAC AAGAACAAAAAAACCTTCAAAGATTTGTTTTCTTTAAAAAAAGCTGGAGAGAACACTTCT AAACCTAATAACTGAGTGATATAGTTTGTTACTTTTAAGTATATTTTAATAATTTTTAAA ATTTGCATTTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCATGATCCGATAGATCTGCAGACCAAGGAACTTAGAGAAACAAATTCCATGGTGGAAGA ATTTATGTTACTTGCCAATATCTCTGTTGCAAAAAAAATCCATGAAGAATTTTCTGAGCA TGCTCTGCTTCGAAAACATCCTGCTCCTCCTCCATCAAATTATGAAATTCTTGTTAAGGC AGCTAAATCCAAGAATTTGGAAATTAAAACCGATACAGCCAAGGCTCTGGCTGACTCCCT GGACCGGGTGGATTCGCCTATTTTCCCATATCTAAATACCCTGTTAAGGATATTAGCCAC CCGCTGTATGATGCAAGCTGTGTACTTCTGCTCTGGAATGGATAATGACTTTCATCACTA TGGCTTAGCATCCCCAATATACACACATTTTACCTCACCCATCCGAAGATACGCAGATAT CATTGTTCATCGTTTGTTGGCTGTGGCCATCGGGGCTGACTGTACGTACCCGGAGTTGAC AGACAAGCACAAGCTTGCAGATTTATGTAAAAATCTCAATTTCCGGCACAAAATGGCGCA ATATGCTCAGCGCGCATCAGTGGCTTTTCATACCCAGTTATTCTTCAAAAGCAAAGGAAT AGTAAGTGAAGAAGCTTATATTCTGTTTGTGAGAAAGAATGCTATTGTGGTTTTGATTCC AAAGTATGGCTTAGAAGGTACAGTGTTTTTTGAAGAAAAGGACAAACCAAAGCCACGACT TATTTATGATGATGAGGTACCATCTCTTAAAATAGAAGATACAGTGTTTCACATATTTGA TAAAGTTAAAGTGAGAATCATGCTAGACTCATCTAATCTTCAGCATCAGAAAATCCGAAT GTTGCTGGTAGAACCACAGATACCAGGAATAAGTGTTCCTACTGATACCTCAAACATGGA CAATAGTGAACCAGAGAGAAAGAAGAAGAAGCTACAAAAATAGCTACAGTCAGCAACAAC AAGAACAAAAAAACCTTCAAAGATTTGTTTTCTTTAAAAAAAGCTGGAGAGAACACTTCT AAACCTAATAACTGAGTGATATAGTTTGTTACTTTTAAGTATATTTTAATAATTTTTAAA ATTTGCATTTTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 271-390, - strand, RNAz p=0.657679 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 271-390, - strand, RNAz p=0.657679 |
| Aligned organism(s): 52 entry(ies) | More info |
| Aligned organism(s): 52 entry(ies) | Help | Less info |
| 192-412, gnl|bosTau2|chr12 (21765819-21766039) | |
| 192-412, gnl|canFam2|chr22 (29859698-29859940) | |
| 192-412, gnl|danRer3|chr17 (35126238-35125990) | |
| 192-412, gnl|dasNov1|scaffold_107852 (548-782) | |
| 192-412, gnl|echTel1|scaffold_289546 (26539-26297) | |
| 192-412, gnl|fr1|chrUn (135895613-135895394) | |
| 192-412, gnl|galGal2|chr1 (152915989-152915747) | |
| 192-412, gnl|hg17|chr13 (72234051-72234293) | |
| 192-412, gnl|Hg17|chr13 (72234278-72234059) | |
| 192-412, gnl|loxAfr1|scaffold_35547 (14775-14533) | |
| 192-412, gnl|mm7|chr14 (93480053-93480295) | |
| 192-412, gnl|Mm7|chr14 (93480282-93480062) | |
| 192-412, gnl|monDom2|scaffold_8 (9017904-9018144) | |
| 192-412, gnl|oryCun1|scaffold_172484 (64684-64923) | |
| 192-412, gnl|panTro1|chr14 (54778999-54779241) | |
| 192-412, gnl|rheMac2|chr17 (53205386-53205625) | |
| 192-412, gnl|rn3|chr15 (82873630-82873874) | |
| 192-412, gnl|tetNig1|chrUn_random (10005554-10005786) | |
| 192-412, gnl|xenTro1|scaffold_107 (842626-842389) | |
| 575-740, gnl|bosTau2|chr12 (21766441-21766606) | |
| 575-740, gnl|canFam2|chr22 (29858909-29859131) | |
| 575-740, gnl|danRer3|chr17 (35128731-35128507) | |
| 575-740, gnl|dasNov1|scaffold_107852 (4-198) | |
| 575-740, gnl|echTel1|scaffold_289546 (27087-26872) | |
| 575-740, gnl|fr1|chrUn (135896131-135895930) | |
| 575-740, gnl|galGal2|chr1 (152917644-152917434) | |
| 575-740, gnl|hg17|chr13 (72233471-72233689) | |
| 575-740, gnl|Hg17|chr13 (72233663-72233498) | |
| 575-740, gnl|mm7|chr14 (93479503-93479716) | |
| 575-740, gnl|Mm7|chr14 (93479690-93479525) | |
| 575-740, gnl|monDom2|scaffold_8 (9016689-9016906) | |
| 575-740, gnl|oryCun1|scaffold_172484 (64120-64341) | |
| 575-740, gnl|panTro1|chr14 (54778425-54778641) | |
| 575-740, gnl|rheMac2|chr17 (53204805-53205021) | |
| 575-740, gnl|rn3|chr15 (82873040-82873256) | |
| 575-740, gnl|tetNig1|chrUn_random (10005077-10005244) | |
| 575-740, gnl|xenTro1|scaffold_107 (847712-847507) | |
| 858-1092, gnl|bosTau2|chr12 (21767698-21767927) | |
| 858-1092, gnl|canFam2|chr22 (29857102-29857327) | |
| 858-1092, gnl|dasNov1|scaffold_22599 (85503-85286) | |
| 858-1092, gnl|echTel1|scaffold_289546 (29351-29156) | |
| 858-1092, gnl|galGal2|chr1 (152921741-152921547) | |
| 858-1092, gnl|hg17|chr13 (72231792-72231989) | |
| 858-1092, gnl|Hg17|chr13 (72232019-72231797) | |
| 858-1092, gnl|loxAfr1|scaffold_35547 (17022-16825) | |
| 858-1092, gnl|mm7|chr14 (93477659-93477838) | |
| 858-1092, gnl|Mm7|chr14 (93477868-93477664) | |
| 858-1092, gnl|monDom2|scaffold_8 (9013652-9013866) | |
| 858-1092, gnl|oryCun1|scaffold_172484 (62261-62447) | |
| 858-1092, gnl|panTro1|chr14 (54776753-54776950) | |
| 858-1092, gnl|rheMac2|chr17 (53203108-53203305) | |
| 858-1092, gnl|rn3|chr15 (82871169-82871355) |
| Aligned organism(s): 52 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 192-412, gnl|bosTau2|chr12 (21765819-21766039) | |
| 192-412, gnl|canFam2|chr22 (29859698-29859940) | |
| 192-412, gnl|danRer3|chr17 (35126238-35125990) | |
| 192-412, gnl|dasNov1|scaffold_107852 (548-782) | |
| 192-412, gnl|echTel1|scaffold_289546 (26539-26297) | |
| 192-412, gnl|fr1|chrUn (135895613-135895394) | |
| 192-412, gnl|galGal2|chr1 (152915989-152915747) | |
| 192-412, gnl|hg17|chr13 (72234051-72234293) | |
| 192-412, gnl|Hg17|chr13 (72234278-72234059) | |
| 192-412, gnl|loxAfr1|scaffold_35547 (14775-14533) | |
| 192-412, gnl|mm7|chr14 (93480053-93480295) | |
| 192-412, gnl|Mm7|chr14 (93480282-93480062) | |
| 192-412, gnl|monDom2|scaffold_8 (9017904-9018144) | |
| 192-412, gnl|oryCun1|scaffold_172484 (64684-64923) | |
| 192-412, gnl|panTro1|chr14 (54778999-54779241) | |
| 192-412, gnl|rheMac2|chr17 (53205386-53205625) | |
| 192-412, gnl|rn3|chr15 (82873630-82873874) | |
| 192-412, gnl|tetNig1|chrUn_random (10005554-10005786) | |
| 192-412, gnl|xenTro1|scaffold_107 (842626-842389) | |
| 575-740, gnl|bosTau2|chr12 (21766441-21766606) | |
| 575-740, gnl|canFam2|chr22 (29858909-29859131) | |
| 575-740, gnl|danRer3|chr17 (35128731-35128507) | |
| 575-740, gnl|dasNov1|scaffold_107852 (4-198) | |
| 575-740, gnl|echTel1|scaffold_289546 (27087-26872) | |
| 575-740, gnl|fr1|chrUn (135896131-135895930) | |
| 575-740, gnl|galGal2|chr1 (152917644-152917434) | |
| 575-740, gnl|hg17|chr13 (72233471-72233689) | |
| 575-740, gnl|Hg17|chr13 (72233663-72233498) | |
| 575-740, gnl|mm7|chr14 (93479503-93479716) | |
| 575-740, gnl|Mm7|chr14 (93479690-93479525) | |
| 575-740, gnl|monDom2|scaffold_8 (9016689-9016906) | |
| 575-740, gnl|oryCun1|scaffold_172484 (64120-64341) | |
| 575-740, gnl|panTro1|chr14 (54778425-54778641) | |
| 575-740, gnl|rheMac2|chr17 (53204805-53205021) | |
| 575-740, gnl|rn3|chr15 (82873040-82873256) | |
| 575-740, gnl|tetNig1|chrUn_random (10005077-10005244) | |
| 575-740, gnl|xenTro1|scaffold_107 (847712-847507) | |
| 858-1092, gnl|bosTau2|chr12 (21767698-21767927) | |
| 858-1092, gnl|canFam2|chr22 (29857102-29857327) | |
| 858-1092, gnl|dasNov1|scaffold_22599 (85503-85286) | |
| 858-1092, gnl|echTel1|scaffold_289546 (29351-29156) | |
| 858-1092, gnl|galGal2|chr1 (152921741-152921547) | |
| 858-1092, gnl|hg17|chr13 (72231792-72231989) | |
| 858-1092, gnl|Hg17|chr13 (72232019-72231797) | |
| 858-1092, gnl|loxAfr1|scaffold_35547 (17022-16825) | |
| 858-1092, gnl|mm7|chr14 (93477659-93477838) | |
| 858-1092, gnl|Mm7|chr14 (93477868-93477664) | |
| 858-1092, gnl|monDom2|scaffold_8 (9013652-9013866) | |
| 858-1092, gnl|oryCun1|scaffold_172484 (62261-62447) | |
| 858-1092, gnl|panTro1|chr14 (54776753-54776950) | |
| 858-1092, gnl|rheMac2|chr17 (53203108-53203305) | |
| 858-1092, gnl|rn3|chr15 (82871169-82871355) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| cbe (0.239234) | |
| sag (0.182715) | |
| gul (0.177588) | |
| fco (0.157208) | |
| fat (0.147427) | |
| ski (0.146735) | |
| lin (0.145603) | |
| spl (0.143184) | |
| csk (0.140746) | |
| nca (0.136874) | |
| ret (0.128733) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbe (0.239234) | |
| sag (0.182715) | |
| gul (0.177588) | |
| fco (0.157208) | |
| fat (0.147427) | |
| ski (0.146735) | |
| lin (0.145603) | |
| spl (0.143184) | |
| csk (0.140746) | |
| nca (0.136874) | |
| ret (0.128733) |