Non-Coding RNA Search

Ss1.1-Pig4-TMW8030K21.3

Sequence:


               
               TCCCAGAAGACCATTTCCAAATTAATTTTTATTCTCTCTTTCCATTCTCTTCCTCCCATT
TAAAATTAAAAAAAAAAAAAAGAGGATGGAGAGGAAGGATAAAAGAAGATAAAAAAACAA
TATGCCAAGGACAGATTTTGAAATTGACTTGATAAATATTTTCCTTAACTCCTTGTATGG
GCCTGAGGGTAAGAGAAAAAATACATCCAATTAAAACTCCTGCCTGGGAAAAGAATACTG
AGACATTGTGAAATGTATGAATGTACTTCTATAACCAGAAACTTCTGCTCAAGCCTTGGG
ATTTTGTTACAGTCAGTGGGACACTGATGAAGATTTAGAGGGGAAGAACCCTGGCAGAGT
ATTTATTACACTACAGAATTGTACCAATGGCTTAGTAATAATGTGGAATCAGCTAAAACC
CAACCACATTTTTTAAATGAGCTAAAATATGAATCGAGTATGTGGTCACATAAAAACAAC
TGTGAATAAAGCACTCTTTGGTGGTGTTAAGGCATCATCCTAAGACCCTGATGCTTTTCA
TAATCTGCATCATTTATTTTGCTCTTAAGGATTCTTTATATTTTCATGTGAATCTAGATC
TTTGGAGCAATTAAAATGGAATTAAAACTTTTAGGAATATAGCTCTTGTAATTAAAAGTT
AAGGAAATTCCAAACTGCATGTGACCTTGTTTATGAAAAGAGAAAGCAAGAAAATACACA
GACCATCTGAAATTAAGTTTAAGAAAAATGTTTGACTTTTTCATAATTTCATGTCCAACA
GTATGGAATTATAACCCCAGAGTTTTTATATGAGTTTTGACTTACTGATATTTTTACTTG
TTAAAGGGGAAATAATTTTTTGATTAGTTATGCCCTAAAGAGTTTTAATTCTTTTAGAAA
TTTAACAATCATTTTCACCAGCATAATTTTATCTTAAGGGGTAACTGATAGGAAAACTTA
GCTTAATTATTCAAGGCCCTAATTTATGTTTATACTATATTGGGTGGTAATAAAAGCCTG
CCATGGAATTCGTTAAACAGTATGAATAACCCTCATATTTAGAACACATACTTTATTAAG
GGAAAAAAACTATCTTGCATCATCCTCAATATAAAATTTGCTTTCTTTTTTTTTTTCTTT
CAATTTTAGACCAAGTGCTATTTAATTCAAATCAGAGGTTGTGAATAAGTACTTTGAACT
GAGGCTAGTTTTGCTAATAATATTTGAAAGAGATTGCTTAAGGAAAAATTCAAAACCATT
TCCCCATGCACTAATATTCACAAAAGGAATTTAAGCATGCTGTCTTAGAGGATTTTCGTA
CTTCTTTTTTGTTTGTTTGTTTTAATATCTGCTTCTCGCTGCTTCTGGCAATGGTGAATT
GTTACATATACATTAATGTTTTCCCAGCCCAAGACTTGTTCATATTTTTCCTATATAAGA
TCTATGGAGTGGAGTGTATCTTTCAAAGAGAGGGAAATACAGAAATGTTAAAACAGAAAA
ACCTGAATGCGATGTGTACATTTTCATCCCACATGGACAATGTATTTGTTTTAATAAATG
GAATTTTCAGATTCAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCCAGAAGACCATTTCCAAATTAATTTTTATTCTCTCTTTCCATTCTCTTCCTCCCATT
TAAAATTAAAAAAAAAAAAAAGAGGATGGAGAGGAAGGATAAAAGAAGATAAAAAAACAA
TATGCCAAGGACAGATTTTGAAATTGACTTGATAAATATTTTCCTTAACTCCTTGTATGG
GCCTGAGGGTAAGAGAAAAAATACATCCAATTAAAACTCCTGCCTGGGAAAAGAATACTG
AGACATTGTGAAATGTATGAATGTACTTCTATAACCAGAAACTTCTGCTCAAGCCTTGGG
ATTTTGTTACAGTCAGTGGGACACTGATGAAGATTTAGAGGGGAAGAACCCTGGCAGAGT
ATTTATTACACTACAGAATTGTACCAATGGCTTAGTAATAATGTGGAATCAGCTAAAACC
CAACCACATTTTTTAAATGAGCTAAAATATGAATCGAGTATGTGGTCACATAAAAACAAC
TGTGAATAAAGCACTCTTTGGTGGTGTTAAGGCATCATCCTAAGACCCTGATGCTTTTCA
TAATCTGCATCATTTATTTTGCTCTTAAGGATTCTTTATATTTTCATGTGAATCTAGATC
TTTGGAGCAATTAAAATGGAATTAAAACTTTTAGGAATATAGCTCTTGTAATTAAAAGTT
AAGGAAATTCCAAACTGCATGTGACCTTGTTTATGAAAAGAGAAAGCAAGAAAATACACA
GACCATCTGAAATTAAGTTTAAGAAAAATGTTTGACTTTTTCATAATTTCATGTCCAACA
GTATGGAATTATAACCCCAGAGTTTTTATATGAGTTTTGACTTACTGATATTTTTACTTG
TTAAAGGGGAAATAATTTTTTGATTAGTTATGCCCTAAAGAGTTTTAATTCTTTTAGAAA
TTTAACAATCATTTTCACCAGCATAATTTTATCTTAAGGGGTAACTGATAGGAAAACTTA
GCTTAATTATTCAAGGCCCTAATTTATGTTTATACTATATTGGGTGGTAATAAAAGCCTG
CCATGGAATTCGTTAAACAGTATGAATAACCCTCATATTTAGAACACATACTTTATTAAG
GGAAAAAAACTATCTTGCATCATCCTCAATATAAAATTTGCTTTCTTTTTTTTTTTCTTT
CAATTTTAGACCAAGTGCTATTTAATTCAAATCAGAGGTTGTGAATAAGTACTTTGAACT
GAGGCTAGTTTTGCTAATAATATTTGAAAGAGATTGCTTAAGGAAAAATTCAAAACCATT
TCCCCATGCACTAATATTCACAAAAGGAATTTAAGCATGCTGTCTTAGAGGATTTTCGTA
CTTCTTTTTTGTTTGTTTGTTTTAATATCTGCTTCTCGCTGCTTCTGGCAATGGTGAATT
GTTACATATACATTAATGTTTTCCCAGCCCAAGACTTGTTCATATTTTTCCTATATAAGA
TCTATGGAGTGGAGTGTATCTTTCAAAGAGAGGGAAATACAGAAATGTTAAAACAGAAAA
ACCTGAATGCGATGTGTACATTTTCATCCCACATGGACAATGTATTTGTTTTAATAAATG
GAATTTTCAGATTCAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               32-148, - strand, RNAz p=0.641287

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               32-148, - strand, RNAz p=0.641287

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               35-145, - strand, RNAmicro p=0.998672

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               35-145, - strand, RNAmicro p=0.998672

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-1575, gnl|bosTau2|chr10 (29718676-29717126)
               

               
               3-1575, gnl|Hg17|chr14 (51504760-51506263)
               

               
               3-1575, gnl|Mm7|chr14 (17532224-17530541)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-1575, gnl|bosTau2|chr10 (29718676-29717126)
               

               
               3-1575, gnl|Hg17|chr14 (51504760-51506263)
               

               
               3-1575, gnl|Mm7|chr14 (17532224-17530541)

Expressed library(ies): 20 entry(ies)

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Expressed library(ies): 20 entry(ies)

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               fco (1.57208)
               

               
               mgp (0.692042)
               

               
               fce (0.543183)
               

               
               ece (0.45861)
               

               
               spl (0.429553)
               

               
               ebs (0.236602)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               ssp (0.13552)
               

               
               kid (0.129735)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)

Expressed library(ies): 20 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (1.57208)
               

               
               mgp (0.692042)
               

               
               fce (0.543183)
               

               
               ece (0.45861)
               

               
               spl (0.429553)
               

               
               ebs (0.236602)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               ssp (0.13552)
               

               
               kid (0.129735)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)

	3-1575, gnl\|bosTau2\|chr10 (29718676-29717126)
	3-1575, gnl\|Hg17\|chr14 (51504760-51506263)
	3-1575, gnl\|Mm7\|chr14 (17532224-17530541)

	fco (1.57208)
	mgp (0.692042)
	fce (0.543183)
	ece (0.45861)
	spl (0.429553)
	ebs (0.236602)
	fcc (0.197785)
	fbs (0.175346)
	eye (0.170503)
	fhi (0.169578)
	mga (0.160205)
	lin (0.145603)
	hyp (0.142837)
	ssp (0.13552)
	kid (0.129735)
	tra (0.123092)
	eep (0.122564)
	med (0.116252)
	ecc (0.115035)
	cbl (0.114797)