Ss1.1-Pig4-TMW8030K22.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCCTCGTGCAGATCATGCGCAACTATAGTTATGAGAAGCTGCTCTGGACCACCAGCCGCG TGCTTAAGGTGCTGTCTGTGTGTCCCAGCAATAAGCCTGCCATTGTGGAGGCCGGTGGGA TGCAGGCCCTGGGCAAACACCTGACAAGCAACAGCCCTCGCCTCGTGCAGAACTGCCTCT GGACCCTGCGTAACCTCTCGGACGTGGCCACCAAGCAGGAGGGCCTGGAGAGTGTGCTGA AGATTCTGGTGAACCAGCTGAGCGTGGACGATGTCAACGTCCTCACCTGTGCCACGGGCA CTCTGTCCAACCTGACCTGCAACAACAGCAAGAACAAGACGCTGGTGACGCAGAACAGCG GCGTGGAGGCGCTCATCCACGCCATCCTGCGCGCGGGCGACAAGGATGACATCACGGAGC CCGCCGTCTGCGCCCTGCGCCACCTCACCAGCCGCCACCCCGAGGCTGAGATGGCCCAGA ACTCCGTGCGCCTCAACTACGGCATCCCGGCCATCGTCAAGCTGCTCAATCAGCCCAACC AGTGGCCACTGGTCAAGGGCCACACTGGCAGCATCGGAAAGTTCCCAGGCCAGGCGTCGA GTCAGAGCTGCAGAGGCTGGCCTGTACCACAGCCACAGCCATGAGGGATCTGAGCGGCGT CTGCAACCTACACCATAGCTCCGGTGTTGCCGTGAGCTGTGGTGTAGGTTGCAGCTGCAG CTTGATCTGGTATTTCTGTGGTTCTGGTGTAGGCCAGCAGCTCCTTGCCTAGGAACGACC ATAAGCTGCAGGTGTGACCCTAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCCTCGTGCAGATCATGCGCAACTATAGTTATGAGAAGCTGCTCTGGACCACCAGCCGCG TGCTTAAGGTGCTGTCTGTGTGTCCCAGCAATAAGCCTGCCATTGTGGAGGCCGGTGGGA TGCAGGCCCTGGGCAAACACCTGACAAGCAACAGCCCTCGCCTCGTGCAGAACTGCCTCT GGACCCTGCGTAACCTCTCGGACGTGGCCACCAAGCAGGAGGGCCTGGAGAGTGTGCTGA AGATTCTGGTGAACCAGCTGAGCGTGGACGATGTCAACGTCCTCACCTGTGCCACGGGCA CTCTGTCCAACCTGACCTGCAACAACAGCAAGAACAAGACGCTGGTGACGCAGAACAGCG GCGTGGAGGCGCTCATCCACGCCATCCTGCGCGCGGGCGACAAGGATGACATCACGGAGC CCGCCGTCTGCGCCCTGCGCCACCTCACCAGCCGCCACCCCGAGGCTGAGATGGCCCAGA ACTCCGTGCGCCTCAACTACGGCATCCCGGCCATCGTCAAGCTGCTCAATCAGCCCAACC AGTGGCCACTGGTCAAGGGCCACACTGGCAGCATCGGAAAGTTCCCAGGCCAGGCGTCGA GTCAGAGCTGCAGAGGCTGGCCTGTACCACAGCCACAGCCATGAGGGATCTGAGCGGCGT CTGCAACCTACACCATAGCTCCGGTGTTGCCGTGAGCTGTGGTGTAGGTTGCAGCTGCAG CTTGATCTGGTATTTCTGTGGTTCTGGTGTAGGCCAGCAGCTCCTTGCCTAGGAACGACC ATAAGCTGCAGGTGTGACCCTAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 1-131, gnl|bosTau2|chr23 (186056-186188) | |
| 1-131, gnl|Hg17|chr17 (37174814-37174683) | |
| 1-131, gnl|Mm7|chr11 (100489696-100489577) | |
| 3-116, gnl|bosTau2|chr20 (14641905-14641792) | |
| 3-116, gnl|canFam2|chr23 (13572111-13572271) | |
| 3-116, gnl|danRer3|chr16 (1303580-1303745) | |
| 3-116, gnl|dasNov1|scaffold_2391 (146198-146350) | |
| 3-116, gnl|echTel1|scaffold_254111 (15232-15402) | |
| 3-116, gnl|fr1|chrUn (55441821-55441652) | |
| 3-116, gnl|galGal2|chr2 (42550408-42550580) | |
| 3-116, gnl|hg17|chr3 (41243702-41243872) | |
| 3-116, gnl|Hg17|chr3 (41243736-41243849) | |
| 3-116, gnl|loxAfr1|scaffold_47533 (18128-18293) | |
| 3-116, gnl|mm7|chr9 (120651211-120651358) | |
| 3-116, gnl|Mm7|chr9 (120651226-120651339) | |
| 3-116, gnl|monDom2|scaffold_7 (64492157-64491986) | |
| 3-116, gnl|oryCun1|scaffold_173799 (55514-55343) | |
| 3-116, gnl|panTro1|chr2 (42390293-42390463) | |
| 3-116, gnl|rheMac2|chr2 (95310112-95309942) | |
| 3-116, gnl|rn3|chr8 (126000483-126000653) | |
| 3-116, gnl|tetNig1|chr8 (3248015-3247863) | |
| 3-116, gnl|xenTro1|scaffold_807 (136164-136338) | |
| 216-558, gnl|bosTau2|chr20 (14638655-14638313) | |
| 216-558, gnl|canFam2|chr23 (13575243-13575615) | |
| 216-558, gnl|danRer3|chr16 (1304724-1305079) | |
| 216-558, gnl|dasNov1|scaffold_10924 (21730-21358) | |
| 216-558, gnl|echTel1|scaffold_315032 (92886-92512) | |
| 216-558, gnl|fr1|chrUn (55441412-55440975) | |
| 216-558, gnl|galGal2|chr2 (42551203-42551571) | |
| 216-558, gnl|hg17|chr3 (41250008-41250380) | |
| 216-558, gnl|Hg17|chr3 (41250021-41250363) | |
| 216-558, gnl|loxAfr1|scaffold_62410 (12115-11748) | |
| 216-558, gnl|mm7|chr9 (120653647-120654019) | |
| 216-558, gnl|Mm7|chr9 (120653660-120654002) | |
| 216-558, gnl|monDom2|scaffold_7 (64490030-64489654) | |
| 216-558, gnl|oryCun1|scaffold_173799 (51679-51307) | |
| 216-558, gnl|panTro1|chr2 (42396598-42396970) | |
| 216-558, gnl|rheMac2|chr2 (95303559-95303187) | |
| 216-558, gnl|rn3|chr8 (126003322-126003694) | |
| 216-558, gnl|tetNig1|chr8 (3247567-3247135) | |
| 216-558, gnl|xenTro1|scaffold_807 (136693-137051) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-131, gnl|bosTau2|chr23 (186056-186188) | |
| 1-131, gnl|Hg17|chr17 (37174814-37174683) | |
| 1-131, gnl|Mm7|chr11 (100489696-100489577) | |
| 3-116, gnl|bosTau2|chr20 (14641905-14641792) | |
| 3-116, gnl|canFam2|chr23 (13572111-13572271) | |
| 3-116, gnl|danRer3|chr16 (1303580-1303745) | |
| 3-116, gnl|dasNov1|scaffold_2391 (146198-146350) | |
| 3-116, gnl|echTel1|scaffold_254111 (15232-15402) | |
| 3-116, gnl|fr1|chrUn (55441821-55441652) | |
| 3-116, gnl|galGal2|chr2 (42550408-42550580) | |
| 3-116, gnl|hg17|chr3 (41243702-41243872) | |
| 3-116, gnl|Hg17|chr3 (41243736-41243849) | |
| 3-116, gnl|loxAfr1|scaffold_47533 (18128-18293) | |
| 3-116, gnl|mm7|chr9 (120651211-120651358) | |
| 3-116, gnl|Mm7|chr9 (120651226-120651339) | |
| 3-116, gnl|monDom2|scaffold_7 (64492157-64491986) | |
| 3-116, gnl|oryCun1|scaffold_173799 (55514-55343) | |
| 3-116, gnl|panTro1|chr2 (42390293-42390463) | |
| 3-116, gnl|rheMac2|chr2 (95310112-95309942) | |
| 3-116, gnl|rn3|chr8 (126000483-126000653) | |
| 3-116, gnl|tetNig1|chr8 (3248015-3247863) | |
| 3-116, gnl|xenTro1|scaffold_807 (136164-136338) | |
| 216-558, gnl|bosTau2|chr20 (14638655-14638313) | |
| 216-558, gnl|canFam2|chr23 (13575243-13575615) | |
| 216-558, gnl|danRer3|chr16 (1304724-1305079) | |
| 216-558, gnl|dasNov1|scaffold_10924 (21730-21358) | |
| 216-558, gnl|echTel1|scaffold_315032 (92886-92512) | |
| 216-558, gnl|fr1|chrUn (55441412-55440975) | |
| 216-558, gnl|galGal2|chr2 (42551203-42551571) | |
| 216-558, gnl|hg17|chr3 (41250008-41250380) | |
| 216-558, gnl|Hg17|chr3 (41250021-41250363) | |
| 216-558, gnl|loxAfr1|scaffold_62410 (12115-11748) | |
| 216-558, gnl|mm7|chr9 (120653647-120654019) | |
| 216-558, gnl|Mm7|chr9 (120653660-120654002) | |
| 216-558, gnl|monDom2|scaffold_7 (64490030-64489654) | |
| 216-558, gnl|oryCun1|scaffold_173799 (51679-51307) | |
| 216-558, gnl|panTro1|chr2 (42396598-42396970) | |
| 216-558, gnl|rheMac2|chr2 (95303559-95303187) | |
| 216-558, gnl|rn3|chr8 (126003322-126003694) | |
| 216-558, gnl|tetNig1|chr8 (3247567-3247135) | |
| 216-558, gnl|xenTro1|scaffold_807 (136693-137051) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cty (0.10408) |