Ss1.1-Pig4-TMW8030L01.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAGTGGGTGGGCCTGTCTGGCCAGATGGTATTTTGGCTGCACAGCCTTTACACACACACG CACGCACACACACACACGTGTTGTTAGAACGCTGAACATGGACCGTGCCCCACCCGACAT CCCCGATCCCCGATGCAAAGCAGCCAGGCTTCCAGACATAAATTAAAAAATAAAATAAAA TAAAATAAAAAAGACTTGGTCTCTGGGAGGGAGAGCTCATGCAGAGAGGAAGGCAAAGGC CCCTGGGAGCCAGGGCCAAGAAGGAGGAGAAGCCCCCACCCCGCCCCTCAGGATTCCCCA CTCCCCAGGGGCCTCAGCCCGAAGACGGGTCACTAACACCAGCCATCAGGCCTTCACCCC CTTTAATGTCCAGTCTCCCAACCTATTCGATTTTGGTGCCGGCCCCCATGTCCCCACCAC AGCCCAAGGGAATAGTGTCCTGAGGGGTGGGGAGGGGGGAGAGTGGGTGCAGCCTGCAGG TCTTTAGCTGGCTTCTCCTGGTTCTAGGTCTGGGTCGGGGGACCCGACGCACTCCTTGCT GAGCCGCACAATTTCCTGGGACAGCACTTCCATGTCCTTGTGCAAATGCATATTCTTGGT GAGCTGCTCCTCCAGCATGTTCTGTAGCTTCTTGTTCATCTCCCGAAGGTTCTCGTCGCC GGGCTTCACGAGGTCTCTCAGGACACTGCCCAGCCCGCTGCGGTCGGTGTGGCCTGCTGC CACAGACACATCGATCCGGCTGTCCATGACATAGGTCTCGATGATGGCGCTCTTCCGGCA CAGGTCCTCGGCCATGGATGCGCTGCTCACCTCCAGGTGCTTGACCTTCTCCTCCAGCAT CCATTTCTCCTGCTGCGTCTCTGCCAGGCGCTGAAAGAGCTCAGCCACTTCCTCATCTGA CAGCTCTGCGGGCCGCGGGGGCTGGGCCTGAGGGCTGCTGGATAAGGATCTGGCTGGAAC AGTTGAGCTCTCCTTTTCCCGCAAGATCTCGCGGTAGCTGAAGGAAGAGACGCTACTGCT GTCCCCGGTCTGGGTCCGGCTTGGTGAGTTCATCTCTGAGAGCACCAGCTCCTCGAGCCC TGAGCGGCTCTTGCTATTGGTGAGGATGTCCTGTAGCCGCTCCTGCAGCTTATCTGCCCG CTTCCGCTCCAGGTGCAGCTGCCGTTTGAGGTCCTTGAGCGCAGCACTGCCCTTCTTCTC CAGGATTCGCTGCCCATCTACCGTGTCCTTCACCTCCTGCTTCAGGCTGTTGATGGTCTT CAGGTGGCAGTCCCGCTCCTCCTGAGCCTGCTGGAGCTGATCCCGCACACCCTGCAGCTC CTCCTCCTTGCTCTTCAGCTCGCTGGCATGCTGCTCCCGACACTGCTTGAGGGCTTCCTC TTGTTCCTGCTGCTGCTGCTGCAGAGATTCCTCGGCCTCCTTCAAGCGCCGTTCAAACCA GCCCTTGGCTCCATCCATAGAGTGAACCTGAGCTTGAAGTTCTTCCACTGTCTGCTGGAG ATTCTCCAGCTCCCGCGTTCGGGCCTTCTCCTCGCGGATCTGCCCACGAAGCTCCTCCTC CTGCCGCTTCTTATCTTCGTGCAGCTCTCGGAGCTCACGCTCGTAGCGGGCACGCACCCC CAGCACCTCCTTCTCATGCCGGAGCCGGACTGCTCCCAGTTCCTCCTTGTGCTGGGACTT CTCCTGCAGCGTCTCCATGGCCAGCTCATCCAGCATGGCCTTCCGCTTCTCAGCACTCTT CCGAGCCTCCTGCAGTTCCTGGGTCAACTGCTCCTTCTCCTGACCGATTTCTTGAAGTTG TTCCAGCAGCCG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAGTGGGTGGGCCTGTCTGGCCAGATGGTATTTTGGCTGCACAGCCTTTACACACACACG CACGCACACACACACACGTGTTGTTAGAACGCTGAACATGGACCGTGCCCCACCCGACAT CCCCGATCCCCGATGCAAAGCAGCCAGGCTTCCAGACATAAATTAAAAAATAAAATAAAA TAAAATAAAAAAGACTTGGTCTCTGGGAGGGAGAGCTCATGCAGAGAGGAAGGCAAAGGC CCCTGGGAGCCAGGGCCAAGAAGGAGGAGAAGCCCCCACCCCGCCCCTCAGGATTCCCCA CTCCCCAGGGGCCTCAGCCCGAAGACGGGTCACTAACACCAGCCATCAGGCCTTCACCCC CTTTAATGTCCAGTCTCCCAACCTATTCGATTTTGGTGCCGGCCCCCATGTCCCCACCAC AGCCCAAGGGAATAGTGTCCTGAGGGGTGGGGAGGGGGGAGAGTGGGTGCAGCCTGCAGG TCTTTAGCTGGCTTCTCCTGGTTCTAGGTCTGGGTCGGGGGACCCGACGCACTCCTTGCT GAGCCGCACAATTTCCTGGGACAGCACTTCCATGTCCTTGTGCAAATGCATATTCTTGGT GAGCTGCTCCTCCAGCATGTTCTGTAGCTTCTTGTTCATCTCCCGAAGGTTCTCGTCGCC GGGCTTCACGAGGTCTCTCAGGACACTGCCCAGCCCGCTGCGGTCGGTGTGGCCTGCTGC CACAGACACATCGATCCGGCTGTCCATGACATAGGTCTCGATGATGGCGCTCTTCCGGCA CAGGTCCTCGGCCATGGATGCGCTGCTCACCTCCAGGTGCTTGACCTTCTCCTCCAGCAT CCATTTCTCCTGCTGCGTCTCTGCCAGGCGCTGAAAGAGCTCAGCCACTTCCTCATCTGA CAGCTCTGCGGGCCGCGGGGGCTGGGCCTGAGGGCTGCTGGATAAGGATCTGGCTGGAAC AGTTGAGCTCTCCTTTTCCCGCAAGATCTCGCGGTAGCTGAAGGAAGAGACGCTACTGCT GTCCCCGGTCTGGGTCCGGCTTGGTGAGTTCATCTCTGAGAGCACCAGCTCCTCGAGCCC TGAGCGGCTCTTGCTATTGGTGAGGATGTCCTGTAGCCGCTCCTGCAGCTTATCTGCCCG CTTCCGCTCCAGGTGCAGCTGCCGTTTGAGGTCCTTGAGCGCAGCACTGCCCTTCTTCTC CAGGATTCGCTGCCCATCTACCGTGTCCTTCACCTCCTGCTTCAGGCTGTTGATGGTCTT CAGGTGGCAGTCCCGCTCCTCCTGAGCCTGCTGGAGCTGATCCCGCACACCCTGCAGCTC CTCCTCCTTGCTCTTCAGCTCGCTGGCATGCTGCTCCCGACACTGCTTGAGGGCTTCCTC TTGTTCCTGCTGCTGCTGCTGCAGAGATTCCTCGGCCTCCTTCAAGCGCCGTTCAAACCA GCCCTTGGCTCCATCCATAGAGTGAACCTGAGCTTGAAGTTCTTCCACTGTCTGCTGGAG ATTCTCCAGCTCCCGCGTTCGGGCCTTCTCCTCGCGGATCTGCCCACGAAGCTCCTCCTC CTGCCGCTTCTTATCTTCGTGCAGCTCTCGGAGCTCACGCTCGTAGCGGGCACGCACCCC CAGCACCTCCTTCTCATGCCGGAGCCGGACTGCTCCCAGTTCCTCCTTGTGCTGGGACTT CTCCTGCAGCGTCTCCATGGCCAGCTCATCCAGCATGGCCTTCCGCTTCTCAGCACTCTT CCGAGCCTCCTGCAGTTCCTGGGTCAACTGCTCCTTCTCCTGACCGATTTCTTGAAGTTG TTCCAGCAGCCG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 133-1739, - strand, RNAz p=0.994077 | |
| 950-1068, + strand, RNAz p=0.7562 | |
| 1236-1326, + strand, RNAz p=0.642753 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 133-1739, - strand, RNAz p=0.994077 | |
| 950-1068, + strand, RNAz p=0.7562 | |
| 1236-1326, + strand, RNAz p=0.642753 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_020137, - |
| Aligned organism(s): 33 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
| 68-578, gnl|bosTau2|chrX (26157948-26157446) | |
| 68-578, gnl|Hg17|chrX (48586429-48586947) | |
| 68-578, gnl|Mm7|chrX (6253666-6253150) | |
| 706-827, gnl|bosTau2|chrX (26155674-26155552) | |
| 706-827, gnl|Hg17|chrX (48588651-48588773) | |
| 706-827, gnl|Mm7|chrX (6251565-6251444) | |
| 950-1085, gnl|bosTau2|chrX (26153291-26153156) | |
| 950-1085, gnl|canFam2|chrX (42076053-42076215) | |
| 950-1085, gnl|danRer3|chrNA (124154087-124154243) | |
| 950-1085, gnl|fr1|chrUn (180862370-180862217) | |
| 950-1085, gnl|hg17|chrX (48590938-48591099) | |
| 950-1085, gnl|Hg17|chrX (48590966-48591101) | |
| 950-1085, gnl|mm7|chrX (6247860-6247716) | |
| 950-1085, gnl|Mm7|chrX (6247847-6247712) | |
| 950-1085, gnl|monDom2|scaffold_134 (182204-182062) | |
| 950-1085, gnl|rheMac2|chrX (46838213-46838374) | |
| 950-1085, gnl|rn3|chrX (26773360-26773504) | |
| 950-1085, gnl|tetNig1|chrUn_random (97045537-97045384) | |
| 1236-1337, gnl|bosTau2|chrX (26151255-26151154) | |
| 1236-1337, gnl|canFam2|chrX (42077982-42078206) | |
| 1236-1337, gnl|dasNov1|scaffold_85538 (2966-2768) | |
| 1236-1337, gnl|fr1|chrUn (300810998-300810766) | |
| 1236-1337, gnl|hg17|chrX (48594140-48594362) | |
| 1236-1337, gnl|Hg17|chrX (48594255-48594356) | |
| 1236-1337, gnl|mm7|chrX (6245826-6245606) | |
| 1236-1337, gnl|Mm7|chrX (6245711-6245610) | |
| 1236-1337, gnl|monDom2|scaffold_134 (181532-181271) | |
| 1236-1337, gnl|oryCun1|scaffold_214886 (65-262) | |
| 1236-1337, gnl|rheMac2|chrX (46841201-46841424) | |
| 1236-1337, gnl|rn3|chrX (26775410-26775639) | |
| 1524-1739, gnl|bosTau2|chrX (26149776-26149561) | |
| 1524-1739, gnl|Hg17|chrX (48595887-48596102) | |
| 1524-1739, gnl|Mm7|chrX (6243616-6243401) |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 68-578, gnl|bosTau2|chrX (26157948-26157446) | |
| 68-578, gnl|Hg17|chrX (48586429-48586947) | |
| 68-578, gnl|Mm7|chrX (6253666-6253150) | |
| 706-827, gnl|bosTau2|chrX (26155674-26155552) | |
| 706-827, gnl|Hg17|chrX (48588651-48588773) | |
| 706-827, gnl|Mm7|chrX (6251565-6251444) | |
| 950-1085, gnl|bosTau2|chrX (26153291-26153156) | |
| 950-1085, gnl|canFam2|chrX (42076053-42076215) | |
| 950-1085, gnl|danRer3|chrNA (124154087-124154243) | |
| 950-1085, gnl|fr1|chrUn (180862370-180862217) | |
| 950-1085, gnl|hg17|chrX (48590938-48591099) | |
| 950-1085, gnl|Hg17|chrX (48590966-48591101) | |
| 950-1085, gnl|mm7|chrX (6247860-6247716) | |
| 950-1085, gnl|Mm7|chrX (6247847-6247712) | |
| 950-1085, gnl|monDom2|scaffold_134 (182204-182062) | |
| 950-1085, gnl|rheMac2|chrX (46838213-46838374) | |
| 950-1085, gnl|rn3|chrX (26773360-26773504) | |
| 950-1085, gnl|tetNig1|chrUn_random (97045537-97045384) | |
| 1236-1337, gnl|bosTau2|chrX (26151255-26151154) | |
| 1236-1337, gnl|canFam2|chrX (42077982-42078206) | |
| 1236-1337, gnl|dasNov1|scaffold_85538 (2966-2768) | |
| 1236-1337, gnl|fr1|chrUn (300810998-300810766) | |
| 1236-1337, gnl|hg17|chrX (48594140-48594362) | |
| 1236-1337, gnl|Hg17|chrX (48594255-48594356) | |
| 1236-1337, gnl|mm7|chrX (6245826-6245606) | |
| 1236-1337, gnl|Mm7|chrX (6245711-6245610) | |
| 1236-1337, gnl|monDom2|scaffold_134 (181532-181271) | |
| 1236-1337, gnl|oryCun1|scaffold_214886 (65-262) | |
| 1236-1337, gnl|rheMac2|chrX (46841201-46841424) | |
| 1236-1337, gnl|rn3|chrX (26775410-26775639) | |
| 1524-1739, gnl|bosTau2|chrX (26149776-26149561) | |
| 1524-1739, gnl|Hg17|chrX (48595887-48596102) | |
| 1524-1739, gnl|Mm7|chrX (6243616-6243401) |
| Expressed library(ies): 8 entry(ies) | More info |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
| fhi (0.169578) | |
| lnt (0.142308) | |
| pla (0.133672) | |
| kid (0.129735) | |
| ebs (0.118301) | |
| jca (0.11396) | |
| nbm (0.0993246) | |
| jej (0.0989218) |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fhi (0.169578) | |
| lnt (0.142308) | |
| pla (0.133672) | |
| kid (0.129735) | |
| ebs (0.118301) | |
| jca (0.11396) | |
| nbm (0.0993246) | |
| jej (0.0989218) |