Non-Coding RNA Search

Ss1.1-Pig4-TMW8030L03.3

Sequence:


               
               CATATGGATTCAAGGATCATTCATGAAAACAGAATTGAAAAAGAAAGAGTCCAAGGAGTG
ACTCGGGAAATTTTTGGAGACTATCCCCAACCAAGACTAGAGTTTGCACAGTATAAGCTT
GAAACAAAATTCAGAAGTGACTTAAATGGGGGCATCTTGGCTGACAGAGAAGAACCCCTC
CGGTGCCTGGTGAAGTTCTCTAGCCCACATCTTCTGGAAGCACTGAAATCCTTAGCACCA
GCCGGTATTGCAGATGCACCACTTTCTCCATTGCTCACTTGCATACCCAGTAAGGGAATG
AATTATTTTAAAATTAGAGATAAATAAGGTGTATTTGGTTTTGTAAGCACAGCATCCTTG
ACTGTGTGCATATGCATTTTAGTTAATGGCAAGCTGGATAGCTTCTATCTATGAACTTGT
TTTAGAAATTCATCCTTGATACTGACAATTTAGAAATGTTAAATATAATTCTTGGGACTG
ATTCTTTCCTCCTCCTGCAAAGCATAGCAGTTGTGGGCCTTTAAAAAGTGACAGGATGCC
TTTTTTTCCCCACTCCTGGCTCTTCTTGATCCTGGTGAGGTCTGGTTCCTTGATAGTTTC
CAGGGATTTTCTCTCTTAAGCCTTGAATCATAAAAAAAAGCACCAAGAAACTATACCCAA
CTCAAAACTTCCTAGGAGAATTGCAAAATTGGTTCATCAAAGGGGCCATAAAATTATTAT
TGCAGGAGGTAGAATATCAGATTACTCAGCTATATAAAATAATGATTTCATTGTAAATAT
GATATTTCGATATTTCTTATAAATCTTTTTTATACATATGGCATCCAAATGTTATATGGA
TTTGTGAATAAAGACATTTAAAAACTGAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATATGGATTCAAGGATCATTCATGAAAACAGAATTGAAAAAGAAAGAGTCCAAGGAGTG
ACTCGGGAAATTTTTGGAGACTATCCCCAACCAAGACTAGAGTTTGCACAGTATAAGCTT
GAAACAAAATTCAGAAGTGACTTAAATGGGGGCATCTTGGCTGACAGAGAAGAACCCCTC
CGGTGCCTGGTGAAGTTCTCTAGCCCACATCTTCTGGAAGCACTGAAATCCTTAGCACCA
GCCGGTATTGCAGATGCACCACTTTCTCCATTGCTCACTTGCATACCCAGTAAGGGAATG
AATTATTTTAAAATTAGAGATAAATAAGGTGTATTTGGTTTTGTAAGCACAGCATCCTTG
ACTGTGTGCATATGCATTTTAGTTAATGGCAAGCTGGATAGCTTCTATCTATGAACTTGT
TTTAGAAATTCATCCTTGATACTGACAATTTAGAAATGTTAAATATAATTCTTGGGACTG
ATTCTTTCCTCCTCCTGCAAAGCATAGCAGTTGTGGGCCTTTAAAAAGTGACAGGATGCC
TTTTTTTCCCCACTCCTGGCTCTTCTTGATCCTGGTGAGGTCTGGTTCCTTGATAGTTTC
CAGGGATTTTCTCTCTTAAGCCTTGAATCATAAAAAAAAGCACCAAGAAACTATACCCAA
CTCAAAACTTCCTAGGAGAATTGCAAAATTGGTTCATCAAAGGGGCCATAAAATTATTAT
TGCAGGAGGTAGAATATCAGATTACTCAGCTATATAAAATAATGATTTCATTGTAAATAT
GATATTTCGATATTTCTTATAAATCTTTTTTATACATATGGCATCCAAATGTTATATGGA
TTTGTGAATAAAGACATTTAAAAACTGAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61864713|ref|XP_591247.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61864713|ref|XP_591247.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               5-117, gnl|bosTau2|chr18 (7661078-7660966)
               

               
               5-117, gnl|Hg17|chr16 (79617632-79617744)
               

               
               5-117, gnl|Mm7|chr8 (115548944-115549056)
               


               
               244-867, gnl|bosTau2|chr18 (7658612-7657988)
               

               
               244-867, gnl|Hg17|chr16 (79619674-79620417)
               

               
               244-867, gnl|Mm7|chr8 (115552616-115553285)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-117, gnl|bosTau2|chr18 (7661078-7660966)
               

               
               5-117, gnl|Hg17|chr16 (79617632-79617744)
               

               
               5-117, gnl|Mm7|chr8 (115548944-115549056)
               


               
               244-867, gnl|bosTau2|chr18 (7658612-7657988)
               

               
               244-867, gnl|Hg17|chr16 (79619674-79620417)
               

               
               244-867, gnl|Mm7|chr8 (115552616-115553285)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               nep (0.183925)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               sug (0.127291)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               sug (0.127291)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

	5-117, gnl\|bosTau2\|chr18 (7661078-7660966)
	5-117, gnl\|Hg17\|chr16 (79617632-79617744)
	5-117, gnl\|Mm7\|chr8 (115548944-115549056)

	244-867, gnl\|bosTau2\|chr18 (7658612-7657988)
	244-867, gnl\|Hg17\|chr16 (79619674-79620417)
	244-867, gnl\|Mm7\|chr8 (115552616-115553285)

	nep (0.183925)
	lin (0.145603)
	spl (0.143184)
	sug (0.127291)
	ebs (0.118301)
	ecc (0.115035)