Ss1.1-Pig4-TMW8030L03.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGGAATAGATGAGGAGAGAGCCGGCTTGCGATGTGGAACGTTTCGTTACAGTGCCAGAG AGATGGATGACATCGTTGCCGAGTTTTTCAGGAGGACCATCTTGAAAATCCCAATGACTG AAATGATGACGATCCTAAAAGCCTGGGATTTTTTGTCTGAAAGTCAACTGCAGGCCGTAA ACTTCCGGCAGAGAAAGGAGTCTCTTGCTCAGGACTTGGTTCTGCTCTGTCAGGAGAAGC GTGCACGTCTCCAGGACGCAGCCCTCTTAGACATCATTTATACGCAGTTTCATCGGCACC AGAAAGTTTGGGATGCTTTTCAGATGAGTAAAGGCGCAGGTGGAGACACTGACCTTTTTG ATATGGAGCAATTCAAAAGTTCATTCAAGAAGATTCTTCAGAGAGCCTTAAAAAATGTGA CAGTCAGCTTCAGAGATGCTGAGGAGAATGCAGTGTGGATTCGAATTGCCTGGGGAACAC AGTATAGAAAGCCAAACCAGTACAAACCTACTTACGTGGTATATTATTCCCAAGCTCCAT ACGCCTTCATTTCTTCCTCCCAGCTGAAGAGCAATCTTCCCCTTCTGGGTCAGGCACTGA CAATTGCAAGCAAACACCATCAGATTGTGAAAATGGACCTGAGAAGCCGCTACCTGGACT CTCTGAAGGCTATGGTTTTTAAACAGTATAATCAGAACTTTGAAACTCACAACTCTTCTA TACCTCTACAAGAAAGAAGCCTTGGGCTGGATATACATATGGATTCAAGGATCATTCATG AAAACAGAATTGAAAAAGAAAGAGTCCAAGGAGTGACTCGGGAAATTTTGGGAGACTATC CCCAACCAAGACTAGAGTTTGCACAGTATAAGCTTGAAACAAAATTCAGAAGTGACTTAA ATGGGGGCATCTGGGCTGACAGAGAAGAACCCCTCCGGTGCCTGGTGAAGTTCTCTAGCC CACATCTTCTGGAAGCACTGAAATCCTTAGCACCAGCCGGTATTGCAGATGCACCACTTT CTCCATGGCTCACTTGCATACCCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGGAATAGATGAGGAGAGAGCCGGCTTGCGATGTGGAACGTTTCGTTACAGTGCCAGAG AGATGGATGACATCGTTGCCGAGTTTTTCAGGAGGACCATCTTGAAAATCCCAATGACTG AAATGATGACGATCCTAAAAGCCTGGGATTTTTTGTCTGAAAGTCAACTGCAGGCCGTAA ACTTCCGGCAGAGAAAGGAGTCTCTTGCTCAGGACTTGGTTCTGCTCTGTCAGGAGAAGC GTGCACGTCTCCAGGACGCAGCCCTCTTAGACATCATTTATACGCAGTTTCATCGGCACC AGAAAGTTTGGGATGCTTTTCAGATGAGTAAAGGCGCAGGTGGAGACACTGACCTTTTTG ATATGGAGCAATTCAAAAGTTCATTCAAGAAGATTCTTCAGAGAGCCTTAAAAAATGTGA CAGTCAGCTTCAGAGATGCTGAGGAGAATGCAGTGTGGATTCGAATTGCCTGGGGAACAC AGTATAGAAAGCCAAACCAGTACAAACCTACTTACGTGGTATATTATTCCCAAGCTCCAT ACGCCTTCATTTCTTCCTCCCAGCTGAAGAGCAATCTTCCCCTTCTGGGTCAGGCACTGA CAATTGCAAGCAAACACCATCAGATTGTGAAAATGGACCTGAGAAGCCGCTACCTGGACT CTCTGAAGGCTATGGTTTTTAAACAGTATAATCAGAACTTTGAAACTCACAACTCTTCTA TACCTCTACAAGAAAGAAGCCTTGGGCTGGATATACATATGGATTCAAGGATCATTCATG AAAACAGAATTGAAAAAGAAAGAGTCCAAGGAGTGACTCGGGAAATTTTGGGAGACTATC CCCAACCAAGACTAGAGTTTGCACAGTATAAGCTTGAAACAAAATTCAGAAGTGACTTAA ATGGGGGCATCTGGGCTGACAGAGAAGAACCCCTCCGGTGCCTGGTGAAGTTCTCTAGCC CACATCTTCTGGAAGCACTGAAATCCTTAGCACCAGCCGGTATTGCAGATGCACCACTTT CTCCATGGCTCACTTGCATACCCA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 42-234, gnl|bosTau2|chr18 (7675099-7674907) | |
| 42-234, gnl|Hg17|chr16 (79603026-79603217) | |
| 42-234, gnl|Mm7|chr8 (115537854-115538045) | |
| 414-594, gnl|bosTau2|chr18 (7666187-7666007) | |
| 414-594, gnl|Hg17|chr16 (79611203-79611383) | |
| 414-594, gnl|Mm7|chr8 (115545066-115545246) | |
| 871-1002, gnl|bosTau2|chr18 (7658968-7658837) | |
| 871-1002, gnl|canFam2|chr5 (73805453-73805311) | |
| 871-1002, gnl|dasNov1|scaffold_2109 (34993-35107) | |
| 871-1002, gnl|echTel1|scaffold_308957 (43612-43754) | |
| 871-1002, gnl|galGal2|chrUn (132118735-132118598) | |
| 871-1002, gnl|hg17|chr16 (79619267-79619409) | |
| 871-1002, gnl|Hg17|chr16 (79619275-79619406) | |
| 871-1002, gnl|loxAfr1|scaffold_9900 (58870-59012) | |
| 871-1002, gnl|mm7|chr8 (115552217-115552358) | |
| 871-1002, gnl|Mm7|chr8 (115552224-115552355) | |
| 871-1002, gnl|monDom2|scaffold_1 (134583954-134583804) | |
| 871-1002, gnl|oryCun1|scaffold_187123 (3945-4087) | |
| 871-1002, gnl|panTro1|chr18 (74488856-74488998) | |
| 871-1002, gnl|rheMac2|chr20 (79178731-79178873) | |
| 871-1002, gnl|rn3|chr19 (47055368-47055509) | |
| 871-1002, gnl|xenTro1|scaffold_519 (812540-812685) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 42-234, gnl|bosTau2|chr18 (7675099-7674907) | |
| 42-234, gnl|Hg17|chr16 (79603026-79603217) | |
| 42-234, gnl|Mm7|chr8 (115537854-115538045) | |
| 414-594, gnl|bosTau2|chr18 (7666187-7666007) | |
| 414-594, gnl|Hg17|chr16 (79611203-79611383) | |
| 414-594, gnl|Mm7|chr8 (115545066-115545246) | |
| 871-1002, gnl|bosTau2|chr18 (7658968-7658837) | |
| 871-1002, gnl|canFam2|chr5 (73805453-73805311) | |
| 871-1002, gnl|dasNov1|scaffold_2109 (34993-35107) | |
| 871-1002, gnl|echTel1|scaffold_308957 (43612-43754) | |
| 871-1002, gnl|galGal2|chrUn (132118735-132118598) | |
| 871-1002, gnl|hg17|chr16 (79619267-79619409) | |
| 871-1002, gnl|Hg17|chr16 (79619275-79619406) | |
| 871-1002, gnl|loxAfr1|scaffold_9900 (58870-59012) | |
| 871-1002, gnl|mm7|chr8 (115552217-115552358) | |
| 871-1002, gnl|Mm7|chr8 (115552224-115552355) | |
| 871-1002, gnl|monDom2|scaffold_1 (134583954-134583804) | |
| 871-1002, gnl|oryCun1|scaffold_187123 (3945-4087) | |
| 871-1002, gnl|panTro1|chr18 (74488856-74488998) | |
| 871-1002, gnl|rheMac2|chr20 (79178731-79178873) | |
| 871-1002, gnl|rn3|chr19 (47055368-47055509) | |
| 871-1002, gnl|xenTro1|scaffold_519 (812540-812685) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (0.207814) | |
| fty (0.17584) | |
| med (0.116252) |