Ss1.1-Pig4-TMW8030L19.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTAACGGCCGCGTGGTTACTGGGCACCCGGTGTGAGCTCTCAAGGCTCCGCGGGTGTTCG CGCTCAGGTGTGCAGGATGAAGATCGAGGAGGTGAAGAGCACGACCAAGACGCAGCGCAT TGCCTCCCACAGCCACGTGAAGGGGCTAGGGCTAGACGAGAATGGTCTGGCCAAGCAGGC GGCCTCGGGGCTCGTGGGCCAGGAGAACGCGCGTGAGGCATGTGGTGTGATAGTAGAATT AATCAAAAGCAAGAAAATGGCTGGAAGAGCTGTCTTGTTGGCAGGACCTCCTGGAACTGG CAAGACAGCTCTAGCTCTGGCTATTGCTCAAGAGCTGGGTAGTAAGGTCCCTTTTTGCCC GATGGTGGGGAGTGAAGTTTACTCCACGGAGATCAAGAAGACAGAAGTGCTGATGGAGAA CTTCCGCAGGGCCATTGGGCTGCGGATAAAGGAGACCAAGGAGGTCTATGAAGGCGAGGT CACGGAGCTGACGCCTTGCGAGACGGAGAACCCGATGGGGGGCTATGGCAAGACTATCAG CCACGTGGTTATCGGGCTCAAGACGGCCAAGGGCACCAAGCAGTTGAAACTGGACCCCAG CATTTTTGAAAGTTTGCAGAAAGAGCGAGTAGAGGCTGGCGATGTGATTTACATTGAAGC CAACAGTGGGGCTGTGAAGAGGCAGGGCAGGTGCGATACCTACGCCACAGAATTCGACCT TGAAGCTGAGGAGTATGTCCCCCTGCCCAAGGGGGATGTGCACAAGAAGAAGGAAATCAT CCAGGATGTGACCTTGCATGACTTGGATGTGGCCAACGCACGGCCCCAGGGGGGACAAGA TATCCTGTCTATGATGGGTCAGCTCATGAAGCCAAAGAAGACTGAGATCACAGATAAACT CCGAGGGGAGATTAACAAAGTGGTGAACAAGTACATCGACCAGGGCGTGGCCGAGCTGGT CCCGGGGGTGCTCTTTGTTGATGAGGTCCACATGCTGGACATCGAGTGCTTTACCTACTT GCACCGGGCCCTGGAGTCTTCCATCGCCCCCATTGTCATCTTTGCATCCAACCGAGGCAA CTGTGTCATCAGGGGAACGGAGGACATCACCTCTCCTCACGGCATCCCTCTTGACCTCCT GGACCGAGTGATGATCATCCGGACCATGCTGTACACCCCACAGGAGATGAAACAGATCAT TAAAATACGAGCCCAGACAGAAGGAATCAACATCAGTGAGGAGGCGCTGAACCACCTTGG GGAGATTGGTACTAAGACCACTCTGAGGTACTCGGTGCAGCTGCTGACCCCAGCCAACCT GCTGGCCAAGATCAACGGGAAAGATGGCATTGAGAAGGAGCATGTCGAGGAGATCAGTGA GCTCTTCTATGATGCCAAGTCCTCGGCCAAGATCCTGGCTGACCAGCAGGACAAGTACAT GAAGTGAGACAGCTGAGGTTACAAGGACACTGGGCAGGCTGGGCCCAATCTGGCCTGTGG GTAGGAGGCTCGCCCCAGGTTGGGTTCTGTCCTCACTCAGGCGGGTGGCAGCATTTTCAG TTTAGTGTGGAAGGGTTTCTTTTTATCATAATTCCTGGCGTGGTTGCTTTGAAGGAACCC TGGTATGTTTTCTAATAAATTCTGATGGGTTATTTGGAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTAACGGCCGCGTGGTTACTGGGCACCCGGTGTGAGCTCTCAAGGCTCCGCGGGTGTTCG CGCTCAGGTGTGCAGGATGAAGATCGAGGAGGTGAAGAGCACGACCAAGACGCAGCGCAT TGCCTCCCACAGCCACGTGAAGGGGCTAGGGCTAGACGAGAATGGTCTGGCCAAGCAGGC GGCCTCGGGGCTCGTGGGCCAGGAGAACGCGCGTGAGGCATGTGGTGTGATAGTAGAATT AATCAAAAGCAAGAAAATGGCTGGAAGAGCTGTCTTGTTGGCAGGACCTCCTGGAACTGG CAAGACAGCTCTAGCTCTGGCTATTGCTCAAGAGCTGGGTAGTAAGGTCCCTTTTTGCCC GATGGTGGGGAGTGAAGTTTACTCCACGGAGATCAAGAAGACAGAAGTGCTGATGGAGAA CTTCCGCAGGGCCATTGGGCTGCGGATAAAGGAGACCAAGGAGGTCTATGAAGGCGAGGT CACGGAGCTGACGCCTTGCGAGACGGAGAACCCGATGGGGGGCTATGGCAAGACTATCAG CCACGTGGTTATCGGGCTCAAGACGGCCAAGGGCACCAAGCAGTTGAAACTGGACCCCAG CATTTTTGAAAGTTTGCAGAAAGAGCGAGTAGAGGCTGGCGATGTGATTTACATTGAAGC CAACAGTGGGGCTGTGAAGAGGCAGGGCAGGTGCGATACCTACGCCACAGAATTCGACCT TGAAGCTGAGGAGTATGTCCCCCTGCCCAAGGGGGATGTGCACAAGAAGAAGGAAATCAT CCAGGATGTGACCTTGCATGACTTGGATGTGGCCAACGCACGGCCCCAGGGGGGACAAGA TATCCTGTCTATGATGGGTCAGCTCATGAAGCCAAAGAAGACTGAGATCACAGATAAACT CCGAGGGGAGATTAACAAAGTGGTGAACAAGTACATCGACCAGGGCGTGGCCGAGCTGGT CCCGGGGGTGCTCTTTGTTGATGAGGTCCACATGCTGGACATCGAGTGCTTTACCTACTT GCACCGGGCCCTGGAGTCTTCCATCGCCCCCATTGTCATCTTTGCATCCAACCGAGGCAA CTGTGTCATCAGGGGAACGGAGGACATCACCTCTCCTCACGGCATCCCTCTTGACCTCCT GGACCGAGTGATGATCATCCGGACCATGCTGTACACCCCACAGGAGATGAAACAGATCAT TAAAATACGAGCCCAGACAGAAGGAATCAACATCAGTGAGGAGGCGCTGAACCACCTTGG GGAGATTGGTACTAAGACCACTCTGAGGTACTCGGTGCAGCTGCTGACCCCAGCCAACCT GCTGGCCAAGATCAACGGGAAAGATGGCATTGAGAAGGAGCATGTCGAGGAGATCAGTGA GCTCTTCTATGATGCCAAGTCCTCGGCCAAGATCCTGGCTGACCAGCAGGACAAGTACAT GAAGTGAGACAGCTGAGGTTACAAGGACACTGGGCAGGCTGGGCCCAATCTGGCCTGTGG GTAGGAGGCTCGCCCCAGGTTGGGTTCTGTCCTCACTCAGGCGGGTGGCAGCATTTTCAG TTTAGTGTGGAAGGGTTTCTTTTTATCATAATTCCTGGCGTGGTTGCTTTGAAGGAACCC TGGTATGTTTTCTAATAAATTCTGATGGGTTATTTGGAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 303-1430, + strand, RNAz p=0.995709 | |
| 672-830, + strand, RNAz p=0.97244 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 303-1430, + strand, RNAz p=0.995709 | |
| 672-830, + strand, RNAz p=0.97244 |
| Aligned organism(s): 59 entry(ies) | More info |
| Aligned organism(s): 59 entry(ies) | Help | Less info |
| 20-218, gnl|bosTau2|chr22 (47103126-47103324) | |
| 20-218, gnl|Hg17|chr3 (129325340-129325124) | |
| 20-218, gnl|Mm7|chr6 (88540548-88540762) | |
| 303-438, gnl|bosTau2|chr22 (47114010-47114145) | |
| 303-438, gnl|canFam2|chr20 (5129273-5129454) | |
| 303-438, gnl|danRer3|chr24 (16501395-16501580) | |
| 303-438, gnl|dasNov1|scaffold_9943 (12008-12191) | |
| 303-438, gnl|echTel1|scaffold_224048 (4929-5114) | |
| 303-438, gnl|fr1|chrUn (169587672-169587831) | |
| 303-438, gnl|galGal2|chr12 (9530863-9530680) | |
| 303-438, gnl|hg17|chr3 (129314424-129314605) | |
| 303-438, gnl|Hg17|chr3 (129314563-129314428) | |
| 303-438, gnl|mm7|chr6 (88548309-88548135) | |
| 303-438, gnl|Mm7|chr6 (88548168-88548303) | |
| 303-438, gnl|monDom2|scaffold_5 (46688028-46688178) | |
| 303-438, gnl|panTro1|chr2 (131199080-131199261) | |
| 303-438, gnl|rheMac2|chr11 (86737100-86736919) | |
| 303-438, gnl|rn3|chr4 (122811445-122811270) | |
| 303-438, gnl|tetNig1|chrUn_random (88467995-88467842) | |
| 303-438, gnl|xenTro1|scaffold_72 (814269-814457) | |
| 672-830, gnl|bosTau2|chr22 (47123432-47123590) | |
| 672-830, gnl|canFam2|chr20 (5118007-5118175) | |
| 672-830, gnl|danRer3|chr24 (16497665-16497823) | |
| 672-830, gnl|echTel1|scaffold_279833 (37786-37618) | |
| 672-830, gnl|fr1|chrUn (169586150-169586319) | |
| 672-830, gnl|galGal2|chr12 (9537097-9536920) | |
| 672-830, gnl|hg17|chr3 (129302131-129302301) | |
| 672-830, gnl|Hg17|chr3 (129302293-129302135) | |
| 672-830, gnl|loxAfr1|scaffold_36184 (11152-11322) | |
| 672-830, gnl|mm7|chr6 (88558212-88558042) | |
| 672-830, gnl|Mm7|chr6 (88558048-88558206) | |
| 672-830, gnl|monDom2|scaffold_5 (46673829-46674008) | |
| 672-830, gnl|oryCun1|scaffold_198424 (157508-157338) | |
| 672-830, gnl|panTro1|chr2 (131186713-131186883) | |
| 672-830, gnl|rheMac2|chr11 (86749173-86749003) | |
| 672-830, gnl|rn3|chr4 (122822709-122822539) | |
| 672-830, gnl|tetNig1|chrUn_random (88469236-88469071) | |
| 672-830, gnl|xenTro1|scaffold_72 (805854-806029) | |
| 892-1093, gnl|bosTau2|chr22 (47126225-47126426) | |
| 892-1093, gnl|canFam2|chr20 (5114379-5114593) | |
| 892-1093, gnl|dasNov1|scaffold_117776 (3266-3053) | |
| 892-1093, gnl|echTel1|scaffold_279833 (40134-39918) | |
| 892-1093, gnl|fr1|chrUn (169585716-169585936) | |
| 892-1093, gnl|galGal2|chr12 (9540843-9540640) | |
| 892-1093, gnl|hg17|chr3 (129298828-129299042) | |
| 892-1093, gnl|Hg17|chr3 (129299041-129298840) | |
| 892-1093, gnl|loxAfr1|scaffold_36184 (7681-7895) | |
| 892-1093, gnl|mm7|chr6 (88561016-88560805) | |
| 892-1093, gnl|Mm7|chr6 (88560804-88561005) | |
| 892-1093, gnl|monDom2|scaffold_5 (46670561-46670775) | |
| 892-1093, gnl|oryCun1|scaffold_198424 (161662-161454) | |
| 892-1093, gnl|panTro1|chr2 (131183409-131183623) | |
| 892-1093, gnl|rheMac2|chr11 (86752580-86752366) | |
| 892-1093, gnl|rn3|chr4 (122825735-122825522) | |
| 892-1093, gnl|tetNig1|chrUn_random (88469674-88469454) | |
| 892-1093, gnl|xenTro1|scaffold_72 (804175-804380) | |
| 1278-1653, gnl|bosTau2|chr22 (47090208-47090577) | |
| 1278-1653, gnl|Hg17|chr3 (129282966-129282559) | |
| 1278-1653, gnl|Mm7|chr6 (88572312-88572649) |
| Aligned organism(s): 59 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 20-218, gnl|bosTau2|chr22 (47103126-47103324) | |
| 20-218, gnl|Hg17|chr3 (129325340-129325124) | |
| 20-218, gnl|Mm7|chr6 (88540548-88540762) | |
| 303-438, gnl|bosTau2|chr22 (47114010-47114145) | |
| 303-438, gnl|canFam2|chr20 (5129273-5129454) | |
| 303-438, gnl|danRer3|chr24 (16501395-16501580) | |
| 303-438, gnl|dasNov1|scaffold_9943 (12008-12191) | |
| 303-438, gnl|echTel1|scaffold_224048 (4929-5114) | |
| 303-438, gnl|fr1|chrUn (169587672-169587831) | |
| 303-438, gnl|galGal2|chr12 (9530863-9530680) | |
| 303-438, gnl|hg17|chr3 (129314424-129314605) | |
| 303-438, gnl|Hg17|chr3 (129314563-129314428) | |
| 303-438, gnl|mm7|chr6 (88548309-88548135) | |
| 303-438, gnl|Mm7|chr6 (88548168-88548303) | |
| 303-438, gnl|monDom2|scaffold_5 (46688028-46688178) | |
| 303-438, gnl|panTro1|chr2 (131199080-131199261) | |
| 303-438, gnl|rheMac2|chr11 (86737100-86736919) | |
| 303-438, gnl|rn3|chr4 (122811445-122811270) | |
| 303-438, gnl|tetNig1|chrUn_random (88467995-88467842) | |
| 303-438, gnl|xenTro1|scaffold_72 (814269-814457) | |
| 672-830, gnl|bosTau2|chr22 (47123432-47123590) | |
| 672-830, gnl|canFam2|chr20 (5118007-5118175) | |
| 672-830, gnl|danRer3|chr24 (16497665-16497823) | |
| 672-830, gnl|echTel1|scaffold_279833 (37786-37618) | |
| 672-830, gnl|fr1|chrUn (169586150-169586319) | |
| 672-830, gnl|galGal2|chr12 (9537097-9536920) | |
| 672-830, gnl|hg17|chr3 (129302131-129302301) | |
| 672-830, gnl|Hg17|chr3 (129302293-129302135) | |
| 672-830, gnl|loxAfr1|scaffold_36184 (11152-11322) | |
| 672-830, gnl|mm7|chr6 (88558212-88558042) | |
| 672-830, gnl|Mm7|chr6 (88558048-88558206) | |
| 672-830, gnl|monDom2|scaffold_5 (46673829-46674008) | |
| 672-830, gnl|oryCun1|scaffold_198424 (157508-157338) | |
| 672-830, gnl|panTro1|chr2 (131186713-131186883) | |
| 672-830, gnl|rheMac2|chr11 (86749173-86749003) | |
| 672-830, gnl|rn3|chr4 (122822709-122822539) | |
| 672-830, gnl|tetNig1|chrUn_random (88469236-88469071) | |
| 672-830, gnl|xenTro1|scaffold_72 (805854-806029) | |
| 892-1093, gnl|bosTau2|chr22 (47126225-47126426) | |
| 892-1093, gnl|canFam2|chr20 (5114379-5114593) | |
| 892-1093, gnl|dasNov1|scaffold_117776 (3266-3053) | |
| 892-1093, gnl|echTel1|scaffold_279833 (40134-39918) | |
| 892-1093, gnl|fr1|chrUn (169585716-169585936) | |
| 892-1093, gnl|galGal2|chr12 (9540843-9540640) | |
| 892-1093, gnl|hg17|chr3 (129298828-129299042) | |
| 892-1093, gnl|Hg17|chr3 (129299041-129298840) | |
| 892-1093, gnl|loxAfr1|scaffold_36184 (7681-7895) | |
| 892-1093, gnl|mm7|chr6 (88561016-88560805) | |
| 892-1093, gnl|Mm7|chr6 (88560804-88561005) | |
| 892-1093, gnl|monDom2|scaffold_5 (46670561-46670775) | |
| 892-1093, gnl|oryCun1|scaffold_198424 (161662-161454) | |
| 892-1093, gnl|panTro1|chr2 (131183409-131183623) | |
| 892-1093, gnl|rheMac2|chr11 (86752580-86752366) | |
| 892-1093, gnl|rn3|chr4 (122825735-122825522) | |
| 892-1093, gnl|tetNig1|chrUn_random (88469674-88469454) | |
| 892-1093, gnl|xenTro1|scaffold_72 (804175-804380) | |
| 1278-1653, gnl|bosTau2|chr22 (47090208-47090577) | |
| 1278-1653, gnl|Hg17|chr3 (129282966-129282559) | |
| 1278-1653, gnl|Mm7|chr6 (88572312-88572649) |
| Expressed library(ies): 21 entry(ies) | More info |
| Expressed library(ies): 21 entry(ies) | Help | Less info |
| elu (0.385356) | |
| nje (0.33184) | |
| cje (0.330469) | |
| clu (0.239292) | |
| ebs (0.236602) | |
| ecc (0.23007) | |
| nms (0.213858) | |
| mas (0.210305) | |
| tes (0.207814) | |
| fty (0.17584) | |
| csp (0.161186) | |
| lun (0.150489) | |
| hyp (0.142837) | |
| csk (0.140746) | |
| nca (0.136874) | |
| sug (0.127291) | |
| bla (0.124347) | |
| eep (0.122564) | |
| eru (0.120048) | |
| med (0.116252) | |
| spc (0.113366) |
| Expressed library(ies): 21 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| elu (0.385356) | |
| nje (0.33184) | |
| cje (0.330469) | |
| clu (0.239292) | |
| ebs (0.236602) | |
| ecc (0.23007) | |
| nms (0.213858) | |
| mas (0.210305) | |
| tes (0.207814) | |
| fty (0.17584) | |
| csp (0.161186) | |
| lun (0.150489) | |
| hyp (0.142837) | |
| csk (0.140746) | |
| nca (0.136874) | |
| sug (0.127291) | |
| bla (0.124347) | |
| eep (0.122564) | |
| eru (0.120048) | |
| med (0.116252) | |
| spc (0.113366) |