Non-Coding RNA Search

Ss1.1-Pig4-TMW8030M03.3

Sequence:


               
               CAATCAGATGTATTTGAAGCCTGGCGGCTGCTGCTAAAAGCCACTCCCACCCTGGCCAGC
AGCCCAGCCTTCCGCTATAACCTGGTGGACATCACTCGCCAGGCGGTCCAGGAGCTGGTC
AGCTTATACTATGAAGAGGCGAGGAGGGCCTATCTGAATAAGGAACTGGTTTCCCTGATG
CGGGCAGGAGGCATCCTGGCCTACGAGCTTCTGCCTGCTCTGGACAAGGTGCTGGCTAGT
GACAGCCACTTCCTGCTGGGCAGCTGGCTGGAGCAGGCCCGGGGGGTGGCAGTCAGTGAG
GCTGAGGCCCTTTTCTATGAGCAGAACAGCCGCTACCAGCTGACCCTGTGGGGGCCAGAA
GGCAACATCTTAGACTATGCCAACAAGCAGCTGGCGGGACTGGTGGCTGACTACTACACC
CCCCGCTGGCGGCTCTTCATGGAGATGCTGGTTGAAAGCCTGGTCCAAGGCATCCCCTTC
CAACAGCACCAGTTTGACCAGAACGTCTTCCAGTTGGAACAGACCTTTGTCCTTGGCACC
AGGAGGTACCCTAGCCAGCCCCAAGGTGACACGGTAGACCTGGCCAAGAAGCTCTTCCTC
AAATATTACCCCCGGTGGGTGGCTGGCTCCTTGTGACGTATCAACCATCCTTGGGCCACA
TTCTCCCCAAACTCCAGGCCTGGACAGGTTCCCAGGGCCTGGGGCTGGACAAGCCTCACA
GGAGTTCCCCAGGCCTGGGTGAAGGAACTCATGCTGGTGGGATCAGGCATGGAAGGTTTG
GAGGGGCCTGAGCTGCCTTCCTCCCTCATCTCAAATTTGGGATCAAAGTACTGTTTTAAT
ACAACTTAATAAACTGATGAATCACCTGGAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAATCAGATGTATTTGAAGCCTGGCGGCTGCTGCTAAAAGCCACTCCCACCCTGGCCAGC
AGCCCAGCCTTCCGCTATAACCTGGTGGACATCACTCGCCAGGCGGTCCAGGAGCTGGTC
AGCTTATACTATGAAGAGGCGAGGAGGGCCTATCTGAATAAGGAACTGGTTTCCCTGATG
CGGGCAGGAGGCATCCTGGCCTACGAGCTTCTGCCTGCTCTGGACAAGGTGCTGGCTAGT
GACAGCCACTTCCTGCTGGGCAGCTGGCTGGAGCAGGCCCGGGGGGTGGCAGTCAGTGAG
GCTGAGGCCCTTTTCTATGAGCAGAACAGCCGCTACCAGCTGACCCTGTGGGGGCCAGAA
GGCAACATCTTAGACTATGCCAACAAGCAGCTGGCGGGACTGGTGGCTGACTACTACACC
CCCCGCTGGCGGCTCTTCATGGAGATGCTGGTTGAAAGCCTGGTCCAAGGCATCCCCTTC
CAACAGCACCAGTTTGACCAGAACGTCTTCCAGTTGGAACAGACCTTTGTCCTTGGCACC
AGGAGGTACCCTAGCCAGCCCCAAGGTGACACGGTAGACCTGGCCAAGAAGCTCTTCCTC
AAATATTACCCCCGGTGGGTGGCTGGCTCCTTGTGACGTATCAACCATCCTTGGGCCACA
TTCTCCCCAAACTCCAGGCCTGGACAGGTTCCCAGGGCCTGGGGCTGGACAAGCCTCACA
GGAGTTCCCCAGGCCTGGGTGAAGGAACTCATGCTGGTGGGATCAGGCATGGAAGGTTTG
GAGGGGCCTGAGCTGCCTTCCTCCCTCATCTCAAATTTGGGATCAAAGTACTGTTTTAAT
ACAACTTAATAAACTGATGAATCACCTGGAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               3-121, - strand, RNAz p=0.636264
               

               
               202-481, - strand, RNAz p=0.982132

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               3-121, - strand, RNAz p=0.636264
               

               
               202-481, - strand, RNAz p=0.982132

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               194-309, + strand, RNAmicro p=0.971913

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               194-309, + strand, RNAmicro p=0.971913

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-870, gnl|bosTau2|chr19 (38835324-38834464)
               

               
               3-870, gnl|Hg17|chr17 (37949149-37950006)
               

               
               3-870, gnl|Mm7|chr11 (101185857-101186696)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-870, gnl|bosTau2|chr19 (38835324-38834464)
               

               
               3-870, gnl|Hg17|chr17 (37949149-37950006)
               

               
               3-870, gnl|Mm7|chr11 (101185857-101186696)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               cag (0.302389)
               

               
               pla (0.267344)
               

               
               lnt (0.142308)
               

               
               cov (0.132153)
               

               
               eru (0.120048)
               

               
               eje (0.0988338)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cag (0.302389)
               

               
               pla (0.267344)
               

               
               lnt (0.142308)
               

               
               cov (0.132153)
               

               
               eru (0.120048)
               

               
               eje (0.0988338)

	3-121, - strand, RNAz p=0.636264
	202-481, - strand, RNAz p=0.982132

	3-870, gnl\|bosTau2\|chr19 (38835324-38834464)
	3-870, gnl\|Hg17\|chr17 (37949149-37950006)
	3-870, gnl\|Mm7\|chr11 (101185857-101186696)

	cag (0.302389)
	pla (0.267344)
	lnt (0.142308)
	cov (0.132153)
	eru (0.120048)
	eje (0.0988338)