Non-Coding RNA Search

Ss1.1-Pig4-TMW8030M07.3

Sequence:


               
               ATTCTTAAAGGCAGCGGTATTGGTACCAGTGCTTAGTTCGGCGGCAGGTAACAGAATTCA
ATTACAATGGGGAACGTTTTTGAAAAACTCTTTAAAAGTCTCTTTGGGAAAAAAGAGATG
CGGATTCTGATGGTGGGTTTGGATGCCGCTGGGAAAACCACCATCTTATATAAGTTGAAG
CTGGGAGAGATTGTGACGACCATCCCTACAATCGGTTTCAATGTGGAGACGGTGGAATAT
AAAAACATCAGCTTCACAGTCTGGGATGTCGGTGGCCAAGACAAAATCAGACCTTTATGG
CGACATTATTTCCAGAACACACAAGGTCTGATTTTTGTGGTCGACAGTAACGATAGAGAG
CGGGTCAATGAAGCCCGAGAAGAACTAACCAGAATGTTAGCTGAAGATGAGCTCAGAGAT
GCAGTTTTATTGGTGTTTGTAAATAAACAGGATCTTCCCAATGCTATGAATGCAGCAGAG
ATAACAGACAAGCTCGGCTTACACTCCCTCCGCCAGAGGAACTGGTACATTCAGGCTACT
TGTGCCACCAGTGGAGATGGGCTTTACGAAGGCCTGGACTGGCTCTCCAACCAGCTCAAA
AACCAGAAGTGACGGGAAGCGCTCCGTTCCCTGTGCATCATGGCCAAAGCAGCTGGCCTC
TCTGTGTGCGTGTGTGCGTGTGAGGAGCCGAGTGTGGGCGTGTGGCCGGGCGTGGGAGCA
GCTTTCTCACATGGTGCCTTATACATGTGCTAGGGAAACCAGTCTTACATGTTATGAACA
ACGAGTGTTACATTTTAAATGCTACCTTCCATTTTAATGGCTGTGATGGCCAGTTTGGCA
GTGGATGCAGGGGTCCAGGGGGCTCCGTGCACAACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTCTTAAAGGCAGCGGTATTGGTACCAGTGCTTAGTTCGGCGGCAGGTAACAGAATTCA
ATTACAATGGGGAACGTTTTTGAAAAACTCTTTAAAAGTCTCTTTGGGAAAAAAGAGATG
CGGATTCTGATGGTGGGTTTGGATGCCGCTGGGAAAACCACCATCTTATATAAGTTGAAG
CTGGGAGAGATTGTGACGACCATCCCTACAATCGGTTTCAATGTGGAGACGGTGGAATAT
AAAAACATCAGCTTCACAGTCTGGGATGTCGGTGGCCAAGACAAAATCAGACCTTTATGG
CGACATTATTTCCAGAACACACAAGGTCTGATTTTTGTGGTCGACAGTAACGATAGAGAG
CGGGTCAATGAAGCCCGAGAAGAACTAACCAGAATGTTAGCTGAAGATGAGCTCAGAGAT
GCAGTTTTATTGGTGTTTGTAAATAAACAGGATCTTCCCAATGCTATGAATGCAGCAGAG
ATAACAGACAAGCTCGGCTTACACTCCCTCCGCCAGAGGAACTGGTACATTCAGGCTACT
TGTGCCACCAGTGGAGATGGGCTTTACGAAGGCCTGGACTGGCTCTCCAACCAGCTCAAA
AACCAGAAGTGACGGGAAGCGCTCCGTTCCCTGTGCATCATGGCCAAAGCAGCTGGCCTC
TCTGTGTGCGTGTGTGCGTGTGAGGAGCCGAGTGTGGGCGTGTGGCCGGGCGTGGGAGCA
GCTTTCTCACATGGTGCCTTATACATGTGCTAGGGAAACCAGTCTTACATGTTATGAACA
ACGAGTGTTACATTTTAAATGCTACCTTCCATTTTAATGGCTGTGATGGCCAGTTTGGCA
GTGGATGCAGGGGTCCAGGGGGCTCCGTGCACAACA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|13162341|ref|NP_077064.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|13162341|ref|NP_077064.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               79-612, gnl|bosTau2|chr16 (24148731-24149244)
               

               
               79-612, gnl|Hg17|chr1 (224591563-224592449)
               

               
               79-612, gnl|Mm7|chr1 (44128452-44128982)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               79-612, gnl|bosTau2|chr16 (24148731-24149244)
               

               
               79-612, gnl|Hg17|chr1 (224591563-224592449)
               

               
               79-612, gnl|Mm7|chr1 (44128452-44128982)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               elu (0.385356)
               

               
               cst (0.280073)
               

               
               nca (0.136874)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               cst (0.280073)
               

               
               nca (0.136874)

	79-612, gnl\|bosTau2\|chr16 (24148731-24149244)
	79-612, gnl\|Hg17\|chr1 (224591563-224592449)
	79-612, gnl\|Mm7\|chr1 (44128452-44128982)