Non-Coding RNA Search

Ss1.1-Pig4-TMW8030M22.3

Sequence:


               
               GCGCAGTAGCGGGCTGAGTCCTCCCAGCGCAGTAGCGGGCCTGAACTGGGGGCTCAATCC
CGGCGCCCGTGAGCGTGATTTTTCCGTGCGAGGCCTGTGGTTCCCTGCGACCTCGTTTAT
GGAGGGCTGTAAAGTCTAGCGGCGATACATCATCCTGATAGGCCCGCGTTTCACCAAGAA
TCCTGTCTTATCTATGAAATGCAGTTAACAGAGCAACTGGACCTGTTTCCTGAGTACAGG
GTGACCCTTCTGTTATTTAAAGATGTGAAAAATGCTGGAGCCTTGAGAAAAAAGGCCATG
GAAGGTGGCATTGACGGCTCATTAATCAACCCTACAGTGATTGTCGATCCATTTCAGATA
CTTGTGGCAGCAAACAAAGCAGTTCACCTCTACAAACTGGGGAAAATGAAGACAAGAACT
CTATCTACGGAAATTATTTTCAATCTTTCCCCAAATAATAATATTTCAGAGGCCTTGAAA
AAATTTGGTATTTCGGCAAATGACACTTCAGTTCTAATTGCTTATATTGAAGAGGGAGAA
AAACAAATAAATCAAGAAGACATCATATCCCAGGTAGAAGGTCATCAAGTTCCTTTGAAA
GAACTCACTGAAATAACAGATATTACAGAAGTCAAAAAGATATATAAACTATCTTCACAA
GAAGAAAGAATTGGGACATTATTGGATGGTATCATTTGTAGAATGTCAACAAAAGATGTT
CTGTAAAATAATAAATATATTAAAAATTTTCAGCATTTATAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGCAGTAGCGGGCTGAGTCCTCCCAGCGCAGTAGCGGGCCTGAACTGGGGGCTCAATCC
CGGCGCCCGTGAGCGTGATTTTTCCGTGCGAGGCCTGTGGTTCCCTGCGACCTCGTTTAT
GGAGGGCTGTAAAGTCTAGCGGCGATACATCATCCTGATAGGCCCGCGTTTCACCAAGAA
TCCTGTCTTATCTATGAAATGCAGTTAACAGAGCAACTGGACCTGTTTCCTGAGTACAGG
GTGACCCTTCTGTTATTTAAAGATGTGAAAAATGCTGGAGCCTTGAGAAAAAAGGCCATG
GAAGGTGGCATTGACGGCTCATTAATCAACCCTACAGTGATTGTCGATCCATTTCAGATA
CTTGTGGCAGCAAACAAAGCAGTTCACCTCTACAAACTGGGGAAAATGAAGACAAGAACT
CTATCTACGGAAATTATTTTCAATCTTTCCCCAAATAATAATATTTCAGAGGCCTTGAAA
AAATTTGGTATTTCGGCAAATGACACTTCAGTTCTAATTGCTTATATTGAAGAGGGAGAA
AAACAAATAAATCAAGAAGACATCATATCCCAGGTAGAAGGTCATCAAGTTCCTTTGAAA
GAACTCACTGAAATAACAGATATTACAGAAGTCAAAAAGATATATAAACTATCTTCACAA
GAAGAAAGAATTGGGACATTATTGGATGGTATCATTTGTAGAATGTCAACAAAAGATGTT
CTGTAAAATAATAAATATATTAAAAATTTTCAGCATTTATAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|58568375|gb|AAW78986.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|58568375|gb|AAW78986.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               177-339, gnl|bosTau2|chr11 (11478056-11477895)
               

               
               177-339, gnl|Hg17|chr2 (73873372-73873211)
               

               
               177-339, gnl|Mm7|chr6 (85999447-85999608)
               


               
               463-649, gnl|bosTau2|chr11 (11475329-11475143)
               

               
               463-649, gnl|Hg17|chr2 (73869518-73869332)
               

               
               463-649, gnl|Mm7|chr6 (86002894-86003077)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               177-339, gnl|bosTau2|chr11 (11478056-11477895)
               

               
               177-339, gnl|Hg17|chr2 (73873372-73873211)
               

               
               177-339, gnl|Mm7|chr6 (85999447-85999608)
               


               
               463-649, gnl|bosTau2|chr11 (11475329-11475143)
               

               
               463-649, gnl|Hg17|chr2 (73869518-73869332)
               

               
               463-649, gnl|Mm7|chr6 (86002894-86003077)

Expressed library(ies): 28 entry(ies)

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Expressed library(ies): 28 entry(ies)

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               cbr (1.40773)
               

               
               tes (0.831255)
               

               
               lyg (0.532411)
               

               
               cbe (0.478469)
               

               
               mgp (0.461361)
               

               
               cst (0.420109)
               

               
               ste (0.405625)
               

               
               thg (0.380373)
               

               
               tra (0.369276)
               

               
               isp (0.300752)
               

               
               che (0.272628)
               

               
               pan (0.23596)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               sto (0.179824)
               

               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               cje (0.165235)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               ret (0.128733)
               

               
               ldo (0.0970026)

Expressed library(ies): 28 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbr (1.40773)
               

               
               tes (0.831255)
               

               
               lyg (0.532411)
               

               
               cbe (0.478469)
               

               
               mgp (0.461361)
               

               
               cst (0.420109)
               

               
               ste (0.405625)
               

               
               thg (0.380373)
               

               
               tra (0.369276)
               

               
               isp (0.300752)
               

               
               che (0.272628)
               

               
               pan (0.23596)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               sto (0.179824)
               

               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               cje (0.165235)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               ret (0.128733)
               

               
               ldo (0.0970026)

	177-339, gnl\|bosTau2\|chr11 (11478056-11477895)
	177-339, gnl\|Hg17\|chr2 (73873372-73873211)
	177-339, gnl\|Mm7\|chr6 (85999447-85999608)

	463-649, gnl\|bosTau2\|chr11 (11475329-11475143)
	463-649, gnl\|Hg17\|chr2 (73869518-73869332)
	463-649, gnl\|Mm7\|chr6 (86002894-86003077)

	cbr (1.40773)
	tes (0.831255)
	lyg (0.532411)
	cbe (0.478469)
	mgp (0.461361)
	cst (0.420109)
	ste (0.405625)
	thg (0.380373)
	tra (0.369276)
	isp (0.300752)
	che (0.272628)
	pan (0.23596)
	aor (0.195274)
	sag (0.182715)
	sto (0.179824)
	fty (0.17584)
	sin (0.174948)
	cje (0.165235)
	mga (0.160205)
	fco (0.157208)
	bfe (0.149858)
	ski (0.146735)
	lin (0.145603)
	ssp (0.13552)
	pla (0.133672)
	ute (0.132784)
	ret (0.128733)
	ldo (0.0970026)