Non-Coding RNA Search

Ss1.1-Pig4-TMW8030M24.5

Sequence:


               
               TATTAGAGCTCTTGTCAATTTCTTTGTAAACTGCATTTGAAGAAACCTAATATTGGTCAT
TTGAAAGAAGATAAACTTGAGAAACAAGAGAAGCCTGTAAATGGTGAAGATAAAGGAGAC
TCAGGAGTTGATACCCAAAACAGTGAAGGAAATGCAGATGAAGAAGACCCACTTGGACCT
AATTGTTATTATGATAAAACTAAATCCTTCTTTGATAATATTTCTTGTGATGATAATAGA
GAACGGAGACCAACCTGGGCTGAAGAACGAAGATTAAATGCAGAAACATTTGGAATCCCA
CTTCGTCCAAACCGTGGCCGTGGAGGGTACAGAGGCAGAGGAGGTCTTGGTTTCCGTGGT
GGCCGAGGGCGTGGTGGTGGCCGAGGTGGTACCTTTACCACCCCTCGAGGATTTCGTGGT
GGATTCAGAGGAGGTCGTGGGGGCAGGGAATTTGCAGATTTTGAATATAGGAAAGACAAC
AAAGTTGCTGCATAGTCTACAAACAAGTCTTTGAGAATAGATGGATTTCTAGCTCTTCAT
GGTCTCCTGAGAATTGGTTTTAGTCTTTGCGAAGAATGAAGAAGTGAATTTGCTGTATAT
TTGTCACCAGCACTGGGTTTTTGTTTGTTTGATGTTTTTCTGCTTAATTTCAAAGATACA
ATGCTATTACTTTTGGGGGGGAAGGCTCTTGAAAAAATGAGCATTCAGTATATTTGGAAT
AGCAGGTTAAGTAACTTCTTAAGTATAGTTAAACTAAAGCAGTACTCCAGTGGGACTATA
AGTATTTTTTCATCACTGAAAGGATTTTTCTTATCACTAAATTGTATTTGGCAATTATTG
CAAGTTGCCTGCAGTTAGGGCCCTAATACTGTGTTTTGAGCCACAGAAGGTTTTGTGTGT
GTGCGTGGATGTCTGTGTCTGTCTTGTCTATATCTTTTTCTTTCTCTCTTTCTCTCTTTA
CTTTTTGGAAATCCTGTCATATCCCTTTTGTAGTTGCTTATTTTGTCAATTAATTAGGGT
GCTGGATGGTGGAGAATTTTGTCAGTCAACTATGTACACACAGTAAATACTGTTTCTTAG
GCAAAGGTAACTTTTTTATATAGTTGTAAAATTCCATTATATTCCATTGCCAAAGAAACA
TTAAGAACTTTGTATAGCTGTATAAAAAGCAACTAATTTTTTAAAGAATAAACATTTTAA
AGTCAGCAAACATACTGTGTCCTTGCAGAAGTTGATGTGCTGAGGAGCAGAACAATGGGT
GGGTCTTTTTTTCAAAGCTTTCCAGGCTTAAGATTGTTGATTTTGATTTTTTTGTTTTTA
ATATTTGGAACATAAATGAAGATTTGATACATTCTTCCATTATCTAAAAAGGATAAATTA
CTCATGCTTATTATAAGAACTTTATTTTGTAGCAAATGGCATATCACAGGATTTATCCAA
ATAATAGATATTTTCAGTATACAAATGTAAATAATCATAGATAAGAATGTACTTAGCTGT
ATTTTCAAATAAGTACTTTTCCTTCTTTTTTTAAGACAATAAAACTAGGTGTCAATTAAC
CTGTTCTTCCTAATATGCCTGGAATTTTGTTGTGATACCTTGACTCATCCCATTATATTT
CAGGATTCAGAGTGTTAGAAATTATTTTAGCAACATATAAGATATCATAACACTGGTCTT
TAGGCCTGTGACCCACAAATGACTCAGTATAGAGTTCATTGCTAATTATAAATTGCAAGT
AAATCTTTTTGATATTTTAAGCTATAGTGGAAAAAAAATCTGGCCGTTTTGTGTTTTTAT
GAAGGCCATGGAATAAAGGGATCCAAAGATTTAAACATTTTTATCTATTTTGATTTTTGT
TAACTTTCTCCTTAAAATATTCAGTAGTGATAAAGATATGAAAAACTCCACTATAGGAGA
ATTGGAGTATTTAAAGGCGCTTGATATTTTTAATTTAATTTTATATCTTTTGTATAGCTC
TAAAGGAAAATGTTTTGTAATTTGGTTTCATTATTAAGGTCCAGTACTTGACAGCCATAG
TTTAGATAATATTGTTTAATACTGTTTGCTTGCATGCTAACAACAAAATCTTTTGGAGGA
CCCACAAATCATGATATTGAACACATTTCTGAGGCATTCTGAACATCAAAGCAAGTTCTA
TGGCAATACCTGTGTAAACTGTTTGAGATGTCCCAGGCTGATTTGAAGAAGAAAAACTGT
AAATACTAGTTTCTACATGCTCTGAAACTATGAATTCATGCAATTTCCAAGCCCTCTGGG
TCAATAACTAGGGCATTTGGTGCCCCAATAATAACTGGCAGCATGGCATACCTGCAGTGC
ACCTTACAATATTAAAGCAAGGTTTTTATTCTAAGACAGAATAAAACTGTTCAATAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATTAGAGCTCTTGTCAATTTCTTTGTAAACTGCATTTGAAGAAACCTAATATTGGTCAT
TTGAAAGAAGATAAACTTGAGAAACAAGAGAAGCCTGTAAATGGTGAAGATAAAGGAGAC
TCAGGAGTTGATACCCAAAACAGTGAAGGAAATGCAGATGAAGAAGACCCACTTGGACCT
AATTGTTATTATGATAAAACTAAATCCTTCTTTGATAATATTTCTTGTGATGATAATAGA
GAACGGAGACCAACCTGGGCTGAAGAACGAAGATTAAATGCAGAAACATTTGGAATCCCA
CTTCGTCCAAACCGTGGCCGTGGAGGGTACAGAGGCAGAGGAGGTCTTGGTTTCCGTGGT
GGCCGAGGGCGTGGTGGTGGCCGAGGTGGTACCTTTACCACCCCTCGAGGATTTCGTGGT
GGATTCAGAGGAGGTCGTGGGGGCAGGGAATTTGCAGATTTTGAATATAGGAAAGACAAC
AAAGTTGCTGCATAGTCTACAAACAAGTCTTTGAGAATAGATGGATTTCTAGCTCTTCAT
GGTCTCCTGAGAATTGGTTTTAGTCTTTGCGAAGAATGAAGAAGTGAATTTGCTGTATAT
TTGTCACCAGCACTGGGTTTTTGTTTGTTTGATGTTTTTCTGCTTAATTTCAAAGATACA
ATGCTATTACTTTTGGGGGGGAAGGCTCTTGAAAAAATGAGCATTCAGTATATTTGGAAT
AGCAGGTTAAGTAACTTCTTAAGTATAGTTAAACTAAAGCAGTACTCCAGTGGGACTATA
AGTATTTTTTCATCACTGAAAGGATTTTTCTTATCACTAAATTGTATTTGGCAATTATTG
CAAGTTGCCTGCAGTTAGGGCCCTAATACTGTGTTTTGAGCCACAGAAGGTTTTGTGTGT
GTGCGTGGATGTCTGTGTCTGTCTTGTCTATATCTTTTTCTTTCTCTCTTTCTCTCTTTA
CTTTTTGGAAATCCTGTCATATCCCTTTTGTAGTTGCTTATTTTGTCAATTAATTAGGGT
GCTGGATGGTGGAGAATTTTGTCAGTCAACTATGTACACACAGTAAATACTGTTTCTTAG
GCAAAGGTAACTTTTTTATATAGTTGTAAAATTCCATTATATTCCATTGCCAAAGAAACA
TTAAGAACTTTGTATAGCTGTATAAAAAGCAACTAATTTTTTAAAGAATAAACATTTTAA
AGTCAGCAAACATACTGTGTCCTTGCAGAAGTTGATGTGCTGAGGAGCAGAACAATGGGT
GGGTCTTTTTTTCAAAGCTTTCCAGGCTTAAGATTGTTGATTTTGATTTTTTTGTTTTTA
ATATTTGGAACATAAATGAAGATTTGATACATTCTTCCATTATCTAAAAAGGATAAATTA
CTCATGCTTATTATAAGAACTTTATTTTGTAGCAAATGGCATATCACAGGATTTATCCAA
ATAATAGATATTTTCAGTATACAAATGTAAATAATCATAGATAAGAATGTACTTAGCTGT
ATTTTCAAATAAGTACTTTTCCTTCTTTTTTTAAGACAATAAAACTAGGTGTCAATTAAC
CTGTTCTTCCTAATATGCCTGGAATTTTGTTGTGATACCTTGACTCATCCCATTATATTT
CAGGATTCAGAGTGTTAGAAATTATTTTAGCAACATATAAGATATCATAACACTGGTCTT
TAGGCCTGTGACCCACAAATGACTCAGTATAGAGTTCATTGCTAATTATAAATTGCAAGT
AAATCTTTTTGATATTTTAAGCTATAGTGGAAAAAAAATCTGGCCGTTTTGTGTTTTTAT
GAAGGCCATGGAATAAAGGGATCCAAAGATTTAAACATTTTTATCTATTTTGATTTTTGT
TAACTTTCTCCTTAAAATATTCAGTAGTGATAAAGATATGAAAAACTCCACTATAGGAGA
ATTGGAGTATTTAAAGGCGCTTGATATTTTTAATTTAATTTTATATCTTTTGTATAGCTC
TAAAGGAAAATGTTTTGTAATTTGGTTTCATTATTAAGGTCCAGTACTTGACAGCCATAG
TTTAGATAATATTGTTTAATACTGTTTGCTTGCATGCTAACAACAAAATCTTTTGGAGGA
CCCACAAATCATGATATTGAACACATTTCTGAGGCATTCTGAACATCAAAGCAAGTTCTA
TGGCAATACCTGTGTAAACTGTTTGAGATGTCCCAGGCTGATTTGAAGAAGAAAAACTGT
AAATACTAGTTTCTACATGCTCTGAAACTATGAATTCATGCAATTTCCAAGCCCTCTGGG
TCAATAACTAGGGCATTTGGTGCCCCAATAATAACTGGCAGCATGGCATACCTGCAGTGC
ACCTTACAATATTAAAGCAAGGTTTTTATTCTAAGACAGAATAAAACTGTTCAATAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q9UFR3_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9UFR3_HUMAN

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               1050-1168, - strand, RNAz p=0.855142
               

               
               2214-2401, - strand, RNAz p=0.98359

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1050-1168, - strand, RNAz p=0.855142
               

               
               2214-2401, - strand, RNAz p=0.98359

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               61-724, gnl|bosTau2|chr9 (5711395-5712044)
               

               
               61-724, gnl|Hg17|chr6 (76377898-76377231)
               


               
               217-471, gnl|bosTau2|chr18 (37809177-37809431)
               

               
               217-471, gnl|Hg17|chr19 (39404229-39404483)
               

               
               217-471, gnl|Mm7|chr7 (31239024-31238774)
               


               
               894-2401, gnl|bosTau2|chr18 (37815873-37817392)
               

               
               894-2401, gnl|Hg17|chr19 (39410564-39412033)
               

               
               894-2401, gnl|Mm7|chr7 (31233007-31231627)

Aligned organism(s): 8 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               61-724, gnl|bosTau2|chr9 (5711395-5712044)
               

               
               61-724, gnl|Hg17|chr6 (76377898-76377231)
               


               
               217-471, gnl|bosTau2|chr18 (37809177-37809431)
               

               
               217-471, gnl|Hg17|chr19 (39404229-39404483)
               

               
               217-471, gnl|Mm7|chr7 (31239024-31238774)
               


               
               894-2401, gnl|bosTau2|chr18 (37815873-37817392)
               

               
               894-2401, gnl|Hg17|chr19 (39410564-39412033)
               

               
               894-2401, gnl|Mm7|chr7 (31233007-31231627)

Expressed library(ies): 42 entry(ies)

More info

Expressed library(ies): 42 entry(ies)

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               cbe (0.717703)
               

               
               rec (0.519211)
               

               
               bfe (0.449573)
               

               
               fcc (0.39557)
               

               
               aor (0.390549)
               

               
               kid (0.389206)
               

               
               ldo (0.38801)
               

               
               sag (0.36543)
               

               
               eye (0.341006)
               

               
               nje (0.33184)
               

               
               fco (0.314416)
               

               
               lin (0.291206)
               

               
               spl (0.286369)
               

               
               lnt (0.284616)
               

               
               fce (0.271592)
               

               
               lyg (0.266205)
               

               
               ova (0.258264)
               

               
               thg (0.253582)
               

               
               bla (0.248694)
               

               
               cbl (0.229595)
               

               
               ece (0.229305)
               

               
               tes (0.207814)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               liv (0.146284)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

Expressed library(ies): 42 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.717703)
               

               
               rec (0.519211)
               

               
               bfe (0.449573)
               

               
               fcc (0.39557)
               

               
               aor (0.390549)
               

               
               kid (0.389206)
               

               
               ldo (0.38801)
               

               
               sag (0.36543)
               

               
               eye (0.341006)
               

               
               nje (0.33184)
               

               
               fco (0.314416)
               

               
               lin (0.291206)
               

               
               spl (0.286369)
               

               
               lnt (0.284616)
               

               
               fce (0.271592)
               

               
               lyg (0.266205)
               

               
               ova (0.258264)
               

               
               thg (0.253582)
               

               
               bla (0.248694)
               

               
               cbl (0.229595)
               

               
               ece (0.229305)
               

               
               tes (0.207814)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               liv (0.146284)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

	1050-1168, - strand, RNAz p=0.855142
	2214-2401, - strand, RNAz p=0.98359

	61-724, gnl\|bosTau2\|chr9 (5711395-5712044)
	61-724, gnl\|Hg17\|chr6 (76377898-76377231)

	217-471, gnl\|bosTau2\|chr18 (37809177-37809431)
	217-471, gnl\|Hg17\|chr19 (39404229-39404483)
	217-471, gnl\|Mm7\|chr7 (31239024-31238774)

	894-2401, gnl\|bosTau2\|chr18 (37815873-37817392)
	894-2401, gnl\|Hg17\|chr19 (39410564-39412033)
	894-2401, gnl\|Mm7\|chr7 (31233007-31231627)

	cbe (0.717703)
	rec (0.519211)
	bfe (0.449573)
	fcc (0.39557)
	aor (0.390549)
	kid (0.389206)
	ldo (0.38801)
	sag (0.36543)
	eye (0.341006)
	nje (0.33184)
	fco (0.314416)
	lin (0.291206)
	spl (0.286369)
	lnt (0.284616)
	fce (0.271592)
	lyg (0.266205)
	ova (0.258264)
	thg (0.253582)
	bla (0.248694)
	cbl (0.229595)
	ece (0.229305)
	tes (0.207814)
	fhi (0.169578)
	nco (0.161734)
	tbr (0.154178)
	isp (0.150376)
	liv (0.146284)
	hyp (0.142837)
	pty (0.142714)
	ste (0.135208)
	pla (0.133672)
	ute (0.132784)
	ese (0.126502)
	tra (0.123092)
	eru (0.120048)
	clu (0.119646)
	ebs (0.118301)
	med (0.116252)
	ecc (0.115035)
	jca (0.11396)
	spc (0.113366)
	cty (0.10408)