Ss1.1-Pig4-TMW8030N02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCTCCTCGTCCAGCTCCCGGAGCCAGTCGGCGGCGGTCACCCCATCCTCCACCACCTCGT CCACCCGCGCCACCCCAGCCCCCGCTGCCCCAGCAGCTGCCTCAGCGACCAGCCCGAGCC CCGCGCCCAGTTCAGGGAATGGAACCAGCACGGCCGCCAGCCCGACGCAGCCCATCCAGC TGAGCGACCTGCAGAGCATTCTCGCCACGATGAACGTGCCGGCCGGGCCCGGAGGCGGCC AGCAAGTTGACCTGGCCAGCGTGCTGACACCCGAGATCATGGCCCCCATCCTCGCCAACG CGGACGTCCAGGAACGCCTGCTGCCCTACCTGCCCTCCGGGGAGTCGCTGCCGCAGACGG CGGAGGAGATTCAGAACACGCTGACCTCGCCCCAGTTCCAGCAGGCCCTGGGCATGTTCA GCGCGGCTTTGGCCTCGGGGCAGCTGGGCCCCCTCATGTGCCAGTTCGGGCTGCCCGCAG AGGCCGTGGAGGCCGCCAACAAGGGCGACGTGGAAGCCTTCGCCAAAGCCATGCAGAGCA GCGCCAGCCCCGAGCAGCAGGAGGGGGACGGCAAGGACAAGAAGGACGAGGAGGAAGACA TGAGCCTCGACTGAGGCGCCCGCGTCGGGGGGGGGGGGGGGCCGCCCCGCTCGTGCGGCC CCGGGAGCGGCGTTTGCCCTCCTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCTCCTCGTCCAGCTCCCGGAGCCAGTCGGCGGCGGTCACCCCATCCTCCACCACCTCGT CCACCCGCGCCACCCCAGCCCCCGCTGCCCCAGCAGCTGCCTCAGCGACCAGCCCGAGCC CCGCGCCCAGTTCAGGGAATGGAACCAGCACGGCCGCCAGCCCGACGCAGCCCATCCAGC TGAGCGACCTGCAGAGCATTCTCGCCACGATGAACGTGCCGGCCGGGCCCGGAGGCGGCC AGCAAGTTGACCTGGCCAGCGTGCTGACACCCGAGATCATGGCCCCCATCCTCGCCAACG CGGACGTCCAGGAACGCCTGCTGCCCTACCTGCCCTCCGGGGAGTCGCTGCCGCAGACGG CGGAGGAGATTCAGAACACGCTGACCTCGCCCCAGTTCCAGCAGGCCCTGGGCATGTTCA GCGCGGCTTTGGCCTCGGGGCAGCTGGGCCCCCTCATGTGCCAGTTCGGGCTGCCCGCAG AGGCCGTGGAGGCCGCCAACAAGGGCGACGTGGAAGCCTTCGCCAAAGCCATGCAGAGCA GCGCCAGCCCCGAGCAGCAGGAGGGGGACGGCAAGGACAAGAAGGACGAGGAGGAAGACA TGAGCCTCGACTGAGGCGCCCGCGTCGGGGGGGGGGGGGGGCCGCCCCGCTCGTGCGGCC CCGGGAGCGGCGTTTGCCCTCCTC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 10-251, gnl|bosTau2|chr13 (36067395-36067154) | |
| 10-251, gnl|Hg17|chr20 (60316043-60316284) | |
| 10-251, gnl|Mm7|chr2 (180676069-180676344) | |
| 396-505, gnl|bosTau2|chr13 (36066716-36066607) | |
| 396-505, gnl|canFam2|chr24 (49360825-49360962) | |
| 396-505, gnl|danRer3|chr23 (5721890-5722020) | |
| 396-505, gnl|dasNov1|scaffold_139767 (2155-2018) | |
| 396-505, gnl|echTel1|scaffold_294928 (705-566) | |
| 396-505, gnl|fr1|chrUn (110713165-110713285) | |
| 396-505, gnl|galGal2|chr20 (7558430-7558552) | |
| 396-505, gnl|hg17|chr20 (60316809-60316944) | |
| 396-505, gnl|Hg17|chr20 (60316810-60316919) | |
| 396-505, gnl|loxAfr1|scaffold_105472 (1310-1448) | |
| 396-505, gnl|mm7|chr2 (180676757-180676890) | |
| 396-505, gnl|Mm7|chr2 (180676758-180676867) | |
| 396-505, gnl|monDom2|scaffold_1 (179845790-179845909) | |
| 396-505, gnl|panTro1|chr21 (63322603-63322738) | |
| 396-505, gnl|rheMac2|chr10 (2232810-2232674) | |
| 396-505, gnl|rn3|chr3 (169139391-169139526) | |
| 396-505, gnl|tetNig1|chr9 (9221980-9222099) | |
| 396-505, gnl|xenTro1|scaffold_220 (555291-555407) | |
| 507-676, gnl|bosTau2|chr13 (36066403-36066238) | |
| 507-676, gnl|canFam2|chr24 (49361117-49361261) | |
| 507-676, gnl|danRer3|chr23 (5722203-5722342) | |
| 507-676, gnl|dasNov1|scaffold_139767 (1942-1796) | |
| 507-676, gnl|echTel1|scaffold_294928 (502-354) | |
| 507-676, gnl|fr1|chrUn (110713349-110713474) | |
| 507-676, gnl|galGal2|chr20 (7559194-7559349) | |
| 507-676, gnl|hg17|chr20 (60317082-60317230) | |
| 507-676, gnl|Hg17|chr20 (60317105-60317255) | |
| 507-676, gnl|loxAfr1|scaffold_105472 (1542-1696) | |
| 507-676, gnl|mm7|chr2 (180676970-180677112) | |
| 507-676, gnl|Mm7|chr2 (180676986-180677154) | |
| 507-676, gnl|monDom2|scaffold_1 (179846283-179846422) | |
| 507-676, gnl|panTro1|chr21 (63322876-63323024) | |
| 507-676, gnl|rheMac2|chr10 (2232537-2232389) | |
| 507-676, gnl|rn3|chr3 (169139573-169139715) | |
| 507-676, gnl|tetNig1|chr9 (9222178-9222289) | |
| 507-676, gnl|xenTro1|scaffold_220 (555497-555643) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 10-251, gnl|bosTau2|chr13 (36067395-36067154) | |
| 10-251, gnl|Hg17|chr20 (60316043-60316284) | |
| 10-251, gnl|Mm7|chr2 (180676069-180676344) | |
| 396-505, gnl|bosTau2|chr13 (36066716-36066607) | |
| 396-505, gnl|canFam2|chr24 (49360825-49360962) | |
| 396-505, gnl|danRer3|chr23 (5721890-5722020) | |
| 396-505, gnl|dasNov1|scaffold_139767 (2155-2018) | |
| 396-505, gnl|echTel1|scaffold_294928 (705-566) | |
| 396-505, gnl|fr1|chrUn (110713165-110713285) | |
| 396-505, gnl|galGal2|chr20 (7558430-7558552) | |
| 396-505, gnl|hg17|chr20 (60316809-60316944) | |
| 396-505, gnl|Hg17|chr20 (60316810-60316919) | |
| 396-505, gnl|loxAfr1|scaffold_105472 (1310-1448) | |
| 396-505, gnl|mm7|chr2 (180676757-180676890) | |
| 396-505, gnl|Mm7|chr2 (180676758-180676867) | |
| 396-505, gnl|monDom2|scaffold_1 (179845790-179845909) | |
| 396-505, gnl|panTro1|chr21 (63322603-63322738) | |
| 396-505, gnl|rheMac2|chr10 (2232810-2232674) | |
| 396-505, gnl|rn3|chr3 (169139391-169139526) | |
| 396-505, gnl|tetNig1|chr9 (9221980-9222099) | |
| 396-505, gnl|xenTro1|scaffold_220 (555291-555407) | |
| 507-676, gnl|bosTau2|chr13 (36066403-36066238) | |
| 507-676, gnl|canFam2|chr24 (49361117-49361261) | |
| 507-676, gnl|danRer3|chr23 (5722203-5722342) | |
| 507-676, gnl|dasNov1|scaffold_139767 (1942-1796) | |
| 507-676, gnl|echTel1|scaffold_294928 (502-354) | |
| 507-676, gnl|fr1|chrUn (110713349-110713474) | |
| 507-676, gnl|galGal2|chr20 (7559194-7559349) | |
| 507-676, gnl|hg17|chr20 (60317082-60317230) | |
| 507-676, gnl|Hg17|chr20 (60317105-60317255) | |
| 507-676, gnl|loxAfr1|scaffold_105472 (1542-1696) | |
| 507-676, gnl|mm7|chr2 (180676970-180677112) | |
| 507-676, gnl|Mm7|chr2 (180676986-180677154) | |
| 507-676, gnl|monDom2|scaffold_1 (179846283-179846422) | |
| 507-676, gnl|panTro1|chr21 (63322876-63323024) | |
| 507-676, gnl|rheMac2|chr10 (2232537-2232389) | |
| 507-676, gnl|rn3|chr3 (169139573-169139715) | |
| 507-676, gnl|tetNig1|chr9 (9222178-9222289) | |
| 507-676, gnl|xenTro1|scaffold_220 (555497-555643) |
| Expressed library(ies): 12 entry(ies) | More info |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
| nlu (0.383362) | |
| nco (0.323468) | |
| ece (0.229305) | |
| col (0.195008) | |
| fty (0.17584) | |
| mcp (0.170648) | |
| csp (0.161186) | |
| pty (0.142714) | |
| hlv (0.139256) | |
| med (0.116252) | |
| cty (0.10408) | |
| jej (0.0989218) |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nlu (0.383362) | |
| nco (0.323468) | |
| ece (0.229305) | |
| col (0.195008) | |
| fty (0.17584) | |
| mcp (0.170648) | |
| csp (0.161186) | |
| pty (0.142714) | |
| hlv (0.139256) | |
| med (0.116252) | |
| cty (0.10408) | |
| jej (0.0989218) |