Non-Coding RNA Search

Ss1.1-Pig4-TMW8030N03.3

Sequence:


               
               CTCATCCCATAATGACAGCGTGCCTAGTTACTGCAAAAATGACGAAGGGGATATATTCCT
GGCCGCTGAGTCCTGGAAGCCTGACGTGTGTACCAGCTGCGTGTGCCTCGATAGTGTGAT
TAGCTGTTTCTCTGAGTCTTGCCCTTCTGTATCCTGCGAAAGACCTGTTTTGAGAAAAGG
CCAGTGTTGTCCCTACTGCATAGAAGACACAATCCCAAAGAAGGTGCTGTGCCACTTCAG
TGGGAAGGCCTACGCCGATGAGGAGCGCTGGGACATTGACAGCTGCACACACTGCTACTG
CCTGCAGGGCCAGACCCTCTGCTCAACCGTCAGCTGCCCCCCGCTGCCCTGCGTCGAGCC
CATCAACGTGGAAGGAAGTTGCTGCCCGATGTGTCCAGAAATGTATGTCCCAGAACCAAC
CAATATACCCATTGAGAAGACAAATCATCGTGGAGAGATTGACCTGGAAGTCCCCCTGTG
GCCCACACCTAGTGAAAATGACATTATCCATCTCCCCAAAGACATGGGTCACCTCCAGGT
AGATTACAGAGACAACAACAGGCTGCATTCAGGTGAAGATTCTTCGCTGGACTCCATTGC
CTCGGTTGTGGTTCCCATAATAATAGGCCTCTCTATTATAATAGCGTTCCTCTTCATCAA
TCAGAAGAAACAGTGGATACCACTGCTTTGCTGGTATCGAACACCAACTAAGCCTTCTTC
CTTAAATAATCACCTGGTATCCGTGGACTGCAAGAAAGGAGCCCGTGTCCAGGTGGACAG
CTCCCAGAGGATGCTGAGAATCGCGGAACCGGATGCGAGGCTCAGTGGCTTCTACAGCAT
GCAAAGACAGAACCACCTACAGGCAGACAACTTCTACCAAACAGTGTGAAGCCAGGCAAC
TTGGATGAGGTTTTGAAAGACAGAAAAACGACTAAACCTGCTCTTAAAAGTAAACTAGAA
TTTGTGCACTTGCTTAGTGGATTGTGTTGGATTGTGACTTGATGTACAGCGCTGAGAACT
TACTGGGATGGGCTCTGTCTACAGCAGTGTGCAGAACAAGCATTCCCACTCTTCCTCAAG
ATAACTGACCAAGTGTTTTCTTAGAACCAAAGGTTTTCGAGTTGCTAAGATGTATTTGCT
TGTAATATAGCTGTAGAGATACTTGGGGGCGGGGACAGTGAGTTTGGTTGGGGAACATGG
GTGGGAGGGAGGTGTTGGGAAGACAAACTGGTCAGCTTGGCTCGGAGAGAAATCCAGTCA
AATAAAAGCAGTCCAGTGGCCCAGAGGGTATTTTTCCTGTTGCTTGGAAGACTGCACTGG
TTGCTGCAAAGCTCAGGCCTGAGTGAGCAGGAAAACAAAAAAAAAAAAAGCTGCCATAGC
CACCTTAGACTACCAGATAAGTGCATCAGAACCTTTCGATAGCCATCCCAGGCCTAAAGC
CACAAGCTTCTTTTCTATCCAGTCAGTAGCTGCAGTAGGCGGCGAGGAAGCCAGAGAAAT
GGGGTAGTGGCATTTCTCTAAAGCAGGTGATTAAGGATATATACAGTTATACTTTTTTGC
TGCTTTCTTTTTCTTCCAAGCCAATCAGCCAGTTCCTAGCAAAGTCAGCAAATGAATGAG
ACCCGAGTCGTTTCTTGATGTGAGCACTGGAGCTTTTCTTACAGCAGCATGGCAGGAAGG
AGGAGAGGGTGAAGGATGCCAGGCATTTCCAGGGGCTATACCTCCTTGTTTGTTGTTGCT
TCGTTCTGTTCTGTTGTTGGTTGTTCATAGTTTTTGTTGACGCTCTAGCTTAAGAAACTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCATCCCATAATGACAGCGTGCCTAGTTACTGCAAAAATGACGAAGGGGATATATTCCT
GGCCGCTGAGTCCTGGAAGCCTGACGTGTGTACCAGCTGCGTGTGCCTCGATAGTGTGAT
TAGCTGTTTCTCTGAGTCTTGCCCTTCTGTATCCTGCGAAAGACCTGTTTTGAGAAAAGG
CCAGTGTTGTCCCTACTGCATAGAAGACACAATCCCAAAGAAGGTGCTGTGCCACTTCAG
TGGGAAGGCCTACGCCGATGAGGAGCGCTGGGACATTGACAGCTGCACACACTGCTACTG
CCTGCAGGGCCAGACCCTCTGCTCAACCGTCAGCTGCCCCCCGCTGCCCTGCGTCGAGCC
CATCAACGTGGAAGGAAGTTGCTGCCCGATGTGTCCAGAAATGTATGTCCCAGAACCAAC
CAATATACCCATTGAGAAGACAAATCATCGTGGAGAGATTGACCTGGAAGTCCCCCTGTG
GCCCACACCTAGTGAAAATGACATTATCCATCTCCCCAAAGACATGGGTCACCTCCAGGT
AGATTACAGAGACAACAACAGGCTGCATTCAGGTGAAGATTCTTCGCTGGACTCCATTGC
CTCGGTTGTGGTTCCCATAATAATAGGCCTCTCTATTATAATAGCGTTCCTCTTCATCAA
TCAGAAGAAACAGTGGATACCACTGCTTTGCTGGTATCGAACACCAACTAAGCCTTCTTC
CTTAAATAATCACCTGGTATCCGTGGACTGCAAGAAAGGAGCCCGTGTCCAGGTGGACAG
CTCCCAGAGGATGCTGAGAATCGCGGAACCGGATGCGAGGCTCAGTGGCTTCTACAGCAT
GCAAAGACAGAACCACCTACAGGCAGACAACTTCTACCAAACAGTGTGAAGCCAGGCAAC
TTGGATGAGGTTTTGAAAGACAGAAAAACGACTAAACCTGCTCTTAAAAGTAAACTAGAA
TTTGTGCACTTGCTTAGTGGATTGTGTTGGATTGTGACTTGATGTACAGCGCTGAGAACT
TACTGGGATGGGCTCTGTCTACAGCAGTGTGCAGAACAAGCATTCCCACTCTTCCTCAAG
ATAACTGACCAAGTGTTTTCTTAGAACCAAAGGTTTTCGAGTTGCTAAGATGTATTTGCT
TGTAATATAGCTGTAGAGATACTTGGGGGCGGGGACAGTGAGTTTGGTTGGGGAACATGG
GTGGGAGGGAGGTGTTGGGAAGACAAACTGGTCAGCTTGGCTCGGAGAGAAATCCAGTCA
AATAAAAGCAGTCCAGTGGCCCAGAGGGTATTTTTCCTGTTGCTTGGAAGACTGCACTGG
TTGCTGCAAAGCTCAGGCCTGAGTGAGCAGGAAAACAAAAAAAAAAAAAGCTGCCATAGC
CACCTTAGACTACCAGATAAGTGCATCAGAACCTTTCGATAGCCATCCCAGGCCTAAAGC
CACAAGCTTCTTTTCTATCCAGTCAGTAGCTGCAGTAGGCGGCGAGGAAGCCAGAGAAAT
GGGGTAGTGGCATTTCTCTAAAGCAGGTGATTAAGGATATATACAGTTATACTTTTTTGC
TGCTTTCTTTTTCTTCCAAGCCAATCAGCCAGTTCCTAGCAAAGTCAGCAAATGAATGAG
ACCCGAGTCGTTTCTTGATGTGAGCACTGGAGCTTTTCTTACAGCAGCATGGCAGGAAGG
AGGAGAGGGTGAAGGATGCCAGGCATTTCCAGGGGCTATACCTCCTTGTTTGTTGTTGCT
TCGTTCTGTTCTGTTGTTGGTTGTTCATAGTTTTTGTTGACGCTCTAGCTTAAGAAACTT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q8BS96_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8BS96_MOUSE

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-203, gnl|bosTau2|chr11 (15004385-15004587)
               

               
               1-203, gnl|Hg17|chr2 (36660905-36661107)
               

               
               1-203, gnl|Mm7|chr17 (76651066-76651268)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-203, gnl|bosTau2|chr11 (15004385-15004587)
               

               
               1-203, gnl|Hg17|chr2 (36660905-36661107)
               

               
               1-203, gnl|Mm7|chr17 (76651066-76651268)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               cut (0.509771)
               

               
               ute (0.398353)
               

               
               pla (0.267344)
               

               
               csp (0.161186)
               

               
               mga (0.160205)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

Expressed library(ies): 7 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cut (0.509771)
               

               
               ute (0.398353)
               

               
               pla (0.267344)
               

               
               csp (0.161186)
               

               
               mga (0.160205)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

	1-203, gnl\|bosTau2\|chr11 (15004385-15004587)
	1-203, gnl\|Hg17\|chr2 (36660905-36661107)
	1-203, gnl\|Mm7\|chr17 (76651066-76651268)

	cut (0.509771)
	ute (0.398353)
	pla (0.267344)
	csp (0.161186)
	mga (0.160205)
	cty (0.10408)
	eje (0.0988338)