Ss1.1-Pig4-TMW8030N04.5
|
GATAAATAGCAGCTTTGCCTCCCTGGCTCCTCTCTGGAATGGAGCAGGTTTCCCAACGAC
ATGCGTCTTGCCAGTTTGGTCAGCTCCTGCTCCCTCCTGCTGCTACTGGGGACTCTCCCT
GGATGGGCAGCCAATGATGACCCCATCGAAAAGGTCATTGAAGGGATCAACCGAGGGCTG
AGCAATGCAGAGAGAGAGATGGGCAAGGCCTTGGAAGGCATCAATAATGGAATCACTCAA
GCTGGAAGGGAAGTAGAGAAAGTTTTTCATGGACTCAACAACATGGGGAACCAGGCCGGC
AAGGAGCTGGACAAGGGCATCCAGGGGCTCAACCATGGCATGGACAAGGTAGCCCACGAC
ATCAACCATGGCATCGGACAAGCAGGAAAGGAAGCAGAGAAGTTTGTCCATGGGGCCAAC
TACGCTGCCGGACAGGGCGGTCATCAAGGCGGATCCACCGGCCAGCACGGAGGGGCCACA
ACCACAAACTTAACATCTGGAGCTTCGGTCAACAAGCCCTTCATCGACCTTCCAGCTCTG
TGGAAGAGCGTCGCCAACATCATTCCCTAAACTGATGAACTGGTCTTGGTGAACAGACTG
ACATGCCTGTTGTCATACTGGCTGAAATGACCTGAAGGAGCTGAGGGTGGGGAATAGATT
TTTGGAGTCATTTAAGCGAGATGTCCTGAGATTTGTGAATAAATACAACACATATTGTAA
AAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GATAAATAGCAGCTTTGCCTCCCTGGCTCCTCTCTGGAATGGAGCAGGTTTCCCAACGAC
ATGCGTCTTGCCAGTTTGGTCAGCTCCTGCTCCCTCCTGCTGCTACTGGGGACTCTCCCT
GGATGGGCAGCCAATGATGACCCCATCGAAAAGGTCATTGAAGGGATCAACCGAGGGCTG
AGCAATGCAGAGAGAGAGATGGGCAAGGCCTTGGAAGGCATCAATAATGGAATCACTCAA
GCTGGAAGGGAAGTAGAGAAAGTTTTTCATGGACTCAACAACATGGGGAACCAGGCCGGC
AAGGAGCTGGACAAGGGCATCCAGGGGCTCAACCATGGCATGGACAAGGTAGCCCACGAC
ATCAACCATGGCATCGGACAAGCAGGAAAGGAAGCAGAGAAGTTTGTCCATGGGGCCAAC
TACGCTGCCGGACAGGGCGGTCATCAAGGCGGATCCACCGGCCAGCACGGAGGGGCCACA
ACCACAAACTTAACATCTGGAGCTTCGGTCAACAAGCCCTTCATCGACCTTCCAGCTCTG
TGGAAGAGCGTCGCCAACATCATTCCCTAAACTGATGAACTGGTCTTGGTGAACAGACTG
ACATGCCTGTTGTCATACTGGCTGAAATGACCTGAAGGAGCTGAGGGTGGGGAATAGATT
TTTGGAGTCATTTAAGCGAGATGTCCTGAGATTTGTGAATAAATACAACACATATTGTAA
AAAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
1-436, gnl|bosTau2|chr18 (39585885-39586320) |
|
1-436, gnl|Hg17|chr19 (40711084-40710648) |
|
1-436, gnl|Mm7|chr7 (27689351-27689764) |
| |
|
545-646, gnl|bosTau2|chr18 (39590408-39590509) |
|
545-646, gnl|canFam2|chr1 (120046763-120046597) |
|
545-646, gnl|dasNov1|scaffold_158474 (3756-3901) |
|
545-646, gnl|hg17|chr19 (40706095-40706258) |
|
545-646, gnl|Hg17|chr19 (40706277-40706180) |
|
545-646, gnl|loxAfr1|scaffold_57239 (3982-3795) |
|
545-646, gnl|mm7|chr7 (27693988-27693832) |
|
545-646, gnl|Mm7|chr7 (27693811-27693897) |
|
545-646, gnl|monDom2|scaffold_139 (1667842-1668021) |
|
545-646, gnl|oryCun1|scaffold_159911 (17826-17980) |
|
545-646, gnl|panTro1|chr20 (37299000-37299163) |
|
545-646, gnl|rheMac2|chr19 (42014843-42015006) |
|
545-646, gnl|rn3|chr1 (85878799-85878645) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-436, gnl|bosTau2|chr18 (39585885-39586320) |
|
1-436, gnl|Hg17|chr19 (40711084-40710648) |
|
1-436, gnl|Mm7|chr7 (27689351-27689764) |
| |
|
545-646, gnl|bosTau2|chr18 (39590408-39590509) |
|
545-646, gnl|canFam2|chr1 (120046763-120046597) |
|
545-646, gnl|dasNov1|scaffold_158474 (3756-3901) |
|
545-646, gnl|hg17|chr19 (40706095-40706258) |
|
545-646, gnl|Hg17|chr19 (40706277-40706180) |
|
545-646, gnl|loxAfr1|scaffold_57239 (3982-3795) |
|
545-646, gnl|mm7|chr7 (27693988-27693832) |
|
545-646, gnl|Mm7|chr7 (27693811-27693897) |
|
545-646, gnl|monDom2|scaffold_139 (1667842-1668021) |
|
545-646, gnl|oryCun1|scaffold_159911 (17826-17980) |
|
545-646, gnl|panTro1|chr20 (37299000-37299163) |
|
545-646, gnl|rheMac2|chr19 (42014843-42015006) |
|
545-646, gnl|rn3|chr1 (85878799-85878645) |
|
nep (2.2071) |
|
ton (1.755) |
|
csk (0.562984) |
|
cga (0.279096) |
|
eye (0.170503) |
|
ute (0.132784) |
|
eru (0.120048) |
|
nep (2.2071) |
|
ton (1.755) |
|
csk (0.562984) |
|
cga (0.279096) |
|
eye (0.170503) |
|
ute (0.132784) |
|
eru (0.120048) |
