Non-Coding RNA Search

Ss1.1-Pig4-TMW8030N06.3

Sequence:


               
               TTCTTAGAGTAAGAAATTCTGAGTTGCCCTCTTGGAGCCGTGGGTCTCAAAGTAGGAAAG
ATCTTTCAGGGCTGGAGACAAAAATTTGACTTGATCGTCTTTTCTCTAGCCTCAGTACTT
TTTTCTGAAGGTTGTGGTCATTTATGGATCCTAATATATCTTGTTACTAGATACTGAGAA
AAAATTCCAAGGGACTTTGGAGAAACATGTCTAGTAACGGAGATAAGAACTTTTTCAAAA
TAGCAAATGTATGTTAGTTTAAAGCTTAAGGCTGCCTTCAAATAAGAGATGTGGACAATG
GGGGTTATTGTATGAGATTTGGGGGTTAAATGTTTTATTTAGAAGACTTAATAATCACAT
GGTTTACATTTACTCAGTTACTATAGATGCTGTGTGGTGCACATTTTCATGGAATACAGG
CTTTTAAAAACAACGATTTTTGCTATATTGCTTACAGACTCCTCAAATAATACTTGGTAA
ATTAGTTTTTCCTGCTCTTATAACAAGAACAAATGTAAATTAAAGAATCTTTATATAAGA
AAAGTAAACTTTACCAAGCTGCTATGGACTAATACTTTGCTTGCCAAAGTTCTTGTCTTT
TTTTTTTTTTTCACATCCATGTAGGACAGTGTTTAGGAACTCATTAGGAAAATCATCTGA
AAAACTGTTAAGTCATGTATTACCTTTAAAAGCCTAATGCCTTTTTTTAATTATAAAATA
TTGTAAAGCATGGTCTCAAGTTTAAGTACACTTTGAATTTTTTCTTTGAATTGTTAAAGT
TATTGATGGTTTCATTTATAAACACTAAATTCTGTCACTTCCTGTCATTTTATCTTTTAT
TCATTCAAATATGTTTTTTCTTATGTGTATTATAAAAAATATATTTTATGATCTCCTACC
TAAATAAATACTTGCAAATGGAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCTTAGAGTAAGAAATTCTGAGTTGCCCTCTTGGAGCCGTGGGTCTCAAAGTAGGAAAG
ATCTTTCAGGGCTGGAGACAAAAATTTGACTTGATCGTCTTTTCTCTAGCCTCAGTACTT
TTTTCTGAAGGTTGTGGTCATTTATGGATCCTAATATATCTTGTTACTAGATACTGAGAA
AAAATTCCAAGGGACTTTGGAGAAACATGTCTAGTAACGGAGATAAGAACTTTTTCAAAA
TAGCAAATGTATGTTAGTTTAAAGCTTAAGGCTGCCTTCAAATAAGAGATGTGGACAATG
GGGGTTATTGTATGAGATTTGGGGGTTAAATGTTTTATTTAGAAGACTTAATAATCACAT
GGTTTACATTTACTCAGTTACTATAGATGCTGTGTGGTGCACATTTTCATGGAATACAGG
CTTTTAAAAACAACGATTTTTGCTATATTGCTTACAGACTCCTCAAATAATACTTGGTAA
ATTAGTTTTTCCTGCTCTTATAACAAGAACAAATGTAAATTAAAGAATCTTTATATAAGA
AAAGTAAACTTTACCAAGCTGCTATGGACTAATACTTTGCTTGCCAAAGTTCTTGTCTTT
TTTTTTTTTTTCACATCCATGTAGGACAGTGTTTAGGAACTCATTAGGAAAATCATCTGA
AAAACTGTTAAGTCATGTATTACCTTTAAAAGCCTAATGCCTTTTTTTAATTATAAAATA
TTGTAAAGCATGGTCTCAAGTTTAAGTACACTTTGAATTTTTTCTTTGAATTGTTAAAGT
TATTGATGGTTTCATTTATAAACACTAAATTCTGTCACTTCCTGTCATTTTATCTTTTAT
TCATTCAAATATGTTTTTTCTTATGTGTATTATAAAAAATATATTTTATGATCTCCTACC
TAAATAAATACTTGCAAATGGAAAAAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               4-920, gnl|bosTau2|chr4 (29105226-29106139)
               

               
               4-920, gnl|Hg17|chr7 (36265741-36266630)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-920, gnl|bosTau2|chr4 (29105226-29106139)
               

               
               4-920, gnl|Hg17|chr7 (36265741-36266630)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

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               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               fco (0.157208)
               

               
               hyp (0.142837)
               

               
               ute (0.132784)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               fco (0.157208)
               

               
               hyp (0.142837)
               

               
               ute (0.132784)

	4-920, gnl\|bosTau2\|chr4 (29105226-29106139)
	4-920, gnl\|Hg17\|chr7 (36265741-36266630)

	fbs (0.175346)
	eye (0.170503)
	fco (0.157208)
	hyp (0.142837)
	ute (0.132784)