Ss1.1-Pig4-TMW8030N17.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGATGGCGGTCGCAGTGAGAACTTTGCAGGAGCAGCTAGAAAAGGCCAAAGAGAGCCTAA AGAACGTAGATGAGAATATTCGCAAGCTCACCGGGCGGGATCCGAATGACGTGAGGCCCA TCCAAGCCAGATTGCTGGCCCTGTCTGGTCCTGGTGGAGGTAGAGGACGTGGTAGTTTAT TGCTGAGGCGTGGATTCTCAGATAGTGGAGGAGGACCCCCAGCCAAACAGAGAGACCTTG AAGGGGCAGTCAGTAGGCTGGGCGGGGAGCGTCGGACTCGGAGAGAATCACGCCAAGAAA GCGACCCAGAGGATGACGATGTTAAGAGGCCAGCTTTGCAGTCTTCAGTTGTAGCTACCT CCAAAGAGCGCACTCGTAGAGACCTTATCCAGGATCAAAATATGGATGAAAAGGGAAAGC AAAGGAACCGACGAATATTTGGCTTGTTGATGGGCACGCTTCAGAAATTTAAACAAGAAT CCACTGTTGCTACTGAAAGGCAAAAGAGACGTCAGGAAATTGAACAAAAACTTGAAGTGC AGGCAGAAGAAGAAAGAAAACAGGTTGAAAATGAGAGGAGAGAACTGTTTGAAGAGAGAC GTGCTAAACAGACAGAACTGCGGCTTTTGGAACAGAAGGTTGAGCTTGCGCAGCTGCAAG AAGAATGGAATGAGCATAATGCCAAGATAATTAAATATATAAGAACTAAGACAAAGCCCC ATTTGTTCTATATTCCTGGAAGAATGTGTCCAGCTACCCAAAAACTGATAGAAGAGTCAC AGAGAAAAATGAATGCTTTATTTGAAGGTAGACGCATCGAATTTGCAGAACAAATAAATA AAATGGAGGCTAGGCCTAGAAGACAATCAATGAAGGAAAAAGAGCATCAGGTGGTGCGTA ATGAAGAACAGAAGTCGGAACAAGAAGAGGGTAAGGTGGCTCAGCGAGAGGAAGAGTTGG AGGAGACAGGTAATCAGCACAATGATGTAGAAATAGAGGAAGCAGGAGAGGAAGAGGAAA AGGAAATAGGTATAGTTCATAGTGATGCAGAGAAAGAACAGGAGGAAGAGGAACAAAAAC AGGAAATGGAAGTTAAGATGGAGGAGGAAACTGAGGTAAGGGAAAGTGAGAAGCAGCAGG ATAGTCAGCCTGAAGAAGTAATGGATGTGCTAGAGATGGTGGAGAGTGTCAAAAATGTAA TTGCTGAGCAGGAAGTAATGGAAACCAATCAAGTTGAAAGTATAGAACCTTCAGAAAATG AAACTAGCAAAGAATTGGAGCCAGAGATGGAATTTGAAGTTGAGCCAGATAAAGAATGTA AATCTCTTTCTCCTGCAAAAGAGAATTCTAGTGCTCTAGAAATGGAAAATGAGCCTGAGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGATGGCGGTCGCAGTGAGAACTTTGCAGGAGCAGCTAGAAAAGGCCAAAGAGAGCCTAA AGAACGTAGATGAGAATATTCGCAAGCTCACCGGGCGGGATCCGAATGACGTGAGGCCCA TCCAAGCCAGATTGCTGGCCCTGTCTGGTCCTGGTGGAGGTAGAGGACGTGGTAGTTTAT TGCTGAGGCGTGGATTCTCAGATAGTGGAGGAGGACCCCCAGCCAAACAGAGAGACCTTG AAGGGGCAGTCAGTAGGCTGGGCGGGGAGCGTCGGACTCGGAGAGAATCACGCCAAGAAA GCGACCCAGAGGATGACGATGTTAAGAGGCCAGCTTTGCAGTCTTCAGTTGTAGCTACCT CCAAAGAGCGCACTCGTAGAGACCTTATCCAGGATCAAAATATGGATGAAAAGGGAAAGC AAAGGAACCGACGAATATTTGGCTTGTTGATGGGCACGCTTCAGAAATTTAAACAAGAAT CCACTGTTGCTACTGAAAGGCAAAAGAGACGTCAGGAAATTGAACAAAAACTTGAAGTGC AGGCAGAAGAAGAAAGAAAACAGGTTGAAAATGAGAGGAGAGAACTGTTTGAAGAGAGAC GTGCTAAACAGACAGAACTGCGGCTTTTGGAACAGAAGGTTGAGCTTGCGCAGCTGCAAG AAGAATGGAATGAGCATAATGCCAAGATAATTAAATATATAAGAACTAAGACAAAGCCCC ATTTGTTCTATATTCCTGGAAGAATGTGTCCAGCTACCCAAAAACTGATAGAAGAGTCAC AGAGAAAAATGAATGCTTTATTTGAAGGTAGACGCATCGAATTTGCAGAACAAATAAATA AAATGGAGGCTAGGCCTAGAAGACAATCAATGAAGGAAAAAGAGCATCAGGTGGTGCGTA ATGAAGAACAGAAGTCGGAACAAGAAGAGGGTAAGGTGGCTCAGCGAGAGGAAGAGTTGG AGGAGACAGGTAATCAGCACAATGATGTAGAAATAGAGGAAGCAGGAGAGGAAGAGGAAA AGGAAATAGGTATAGTTCATAGTGATGCAGAGAAAGAACAGGAGGAAGAGGAACAAAAAC AGGAAATGGAAGTTAAGATGGAGGAGGAAACTGAGGTAAGGGAAAGTGAGAAGCAGCAGG ATAGTCAGCCTGAAGAAGTAATGGATGTGCTAGAGATGGTGGAGAGTGTCAAAAATGTAA TTGCTGAGCAGGAAGTAATGGAAACCAATCAAGTTGAAAGTATAGAACCTTCAGAAAATG AAACTAGCAAAGAATTGGAGCCAGAGATGGAATTTGAAGTTGAGCCAGATAAAGAATGTA AATCTCTTTCTCCTGCAAAAGAGAATTCTAGTGCTCTAGAAATGGAAAATGAGCCTGAGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1151-1380, - strand, RNAz p=0.784727 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1151-1380, - strand, RNAz p=0.784727 |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 1-116, gnl|bosTau2|chr21 (33600474-33600359) | |
| 1-116, gnl|canFam2|chr8 (20360300-20360437) | |
| 1-116, gnl|danRer3|chr17 (6318668-6318542) | |
| 1-116, gnl|dasNov1|scaffold_5095 (36236-36097) | |
| 1-116, gnl|echTel1|scaffold_263920 (13348-13228) | |
| 1-116, gnl|fr1|chrUn (157980800-157980920) | |
| 1-116, gnl|galGal2|chr5 (34466630-34466769) | |
| 1-116, gnl|hg17|chr14 (38714226-38714363) | |
| 1-116, gnl|Hg17|chr14 (38714233-38714348) | |
| 1-116, gnl|loxAfr1|scaffold_12857 (8114-8251) | |
| 1-116, gnl|mm7|chr12 (57001888-57002025) | |
| 1-116, gnl|Mm7|chr12 (57001895-57002010) | |
| 1-116, gnl|monDom2|scaffold_8 (89308174-89308039) | |
| 1-116, gnl|oryCun1|scaffold_202898 (45012-44878) | |
| 1-116, gnl|panTro1|chr15 (38070879-38071016) | |
| 1-116, gnl|rheMac2|chr7 (102152839-102152976) | |
| 1-116, gnl|rn3|chr6 (79762087-79762224) | |
| 1-116, gnl|tetNig1|chr10 (2454254-2454129) | |
| 1-116, gnl|xenTro1|scaffold_33 (2412713-2412585) | |
| 500-656, gnl|bosTau2|chr21 (33597121-33596965) | |
| 500-656, gnl|canFam2|chr8 (20364071-20364238) | |
| 500-656, gnl|danRer3|chr17 (6310782-6310590) | |
| 500-656, gnl|dasNov1|scaffold_5095 (32488-32313) | |
| 500-656, gnl|echTel1|scaffold_3972 (6338-6163) | |
| 500-656, gnl|fr1|chrUn (157982756-157982940) | |
| 500-656, gnl|galGal2|chr5 (34473165-34473340) | |
| 500-656, gnl|hg17|chr14 (38718032-38718208) | |
| 500-656, gnl|Hg17|chr14 (38718045-38718201) | |
| 500-656, gnl|loxAfr1|scaffold_12857 (12037-12212) | |
| 500-656, gnl|mm7|chr12 (57005023-57005198) | |
| 500-656, gnl|Mm7|chr12 (57005035-57005191) | |
| 500-656, gnl|monDom2|scaffold_8 (89302365-89302190) | |
| 500-656, gnl|panTro1|chr15 (38074664-38074840) | |
| 500-656, gnl|rheMac2|chr7 (102156639-102156815) | |
| 500-656, gnl|rn3|chr6 (79767231-79767407) | |
| 500-656, gnl|tetNig1|chr10 (2452478-2452310) | |
| 500-656, gnl|xenTro1|scaffold_33 (2403722-2403546) | |
| 795-1380, gnl|bosTau2|chr21 (33596008-33595420) | |
| 795-1380, gnl|Hg17|chr14 (38719457-38720042) | |
| 795-1380, gnl|Mm7|chr12 (57006319-57006904) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-116, gnl|bosTau2|chr21 (33600474-33600359) | |
| 1-116, gnl|canFam2|chr8 (20360300-20360437) | |
| 1-116, gnl|danRer3|chr17 (6318668-6318542) | |
| 1-116, gnl|dasNov1|scaffold_5095 (36236-36097) | |
| 1-116, gnl|echTel1|scaffold_263920 (13348-13228) | |
| 1-116, gnl|fr1|chrUn (157980800-157980920) | |
| 1-116, gnl|galGal2|chr5 (34466630-34466769) | |
| 1-116, gnl|hg17|chr14 (38714226-38714363) | |
| 1-116, gnl|Hg17|chr14 (38714233-38714348) | |
| 1-116, gnl|loxAfr1|scaffold_12857 (8114-8251) | |
| 1-116, gnl|mm7|chr12 (57001888-57002025) | |
| 1-116, gnl|Mm7|chr12 (57001895-57002010) | |
| 1-116, gnl|monDom2|scaffold_8 (89308174-89308039) | |
| 1-116, gnl|oryCun1|scaffold_202898 (45012-44878) | |
| 1-116, gnl|panTro1|chr15 (38070879-38071016) | |
| 1-116, gnl|rheMac2|chr7 (102152839-102152976) | |
| 1-116, gnl|rn3|chr6 (79762087-79762224) | |
| 1-116, gnl|tetNig1|chr10 (2454254-2454129) | |
| 1-116, gnl|xenTro1|scaffold_33 (2412713-2412585) | |
| 500-656, gnl|bosTau2|chr21 (33597121-33596965) | |
| 500-656, gnl|canFam2|chr8 (20364071-20364238) | |
| 500-656, gnl|danRer3|chr17 (6310782-6310590) | |
| 500-656, gnl|dasNov1|scaffold_5095 (32488-32313) | |
| 500-656, gnl|echTel1|scaffold_3972 (6338-6163) | |
| 500-656, gnl|fr1|chrUn (157982756-157982940) | |
| 500-656, gnl|galGal2|chr5 (34473165-34473340) | |
| 500-656, gnl|hg17|chr14 (38718032-38718208) | |
| 500-656, gnl|Hg17|chr14 (38718045-38718201) | |
| 500-656, gnl|loxAfr1|scaffold_12857 (12037-12212) | |
| 500-656, gnl|mm7|chr12 (57005023-57005198) | |
| 500-656, gnl|Mm7|chr12 (57005035-57005191) | |
| 500-656, gnl|monDom2|scaffold_8 (89302365-89302190) | |
| 500-656, gnl|panTro1|chr15 (38074664-38074840) | |
| 500-656, gnl|rheMac2|chr7 (102156639-102156815) | |
| 500-656, gnl|rn3|chr6 (79767231-79767407) | |
| 500-656, gnl|tetNig1|chr10 (2452478-2452310) | |
| 500-656, gnl|xenTro1|scaffold_33 (2403722-2403546) | |
| 795-1380, gnl|bosTau2|chr21 (33596008-33595420) | |
| 795-1380, gnl|Hg17|chr14 (38719457-38720042) | |
| 795-1380, gnl|Mm7|chr12 (57006319-57006904) |
| Expressed library(ies): 14 entry(ies) | More info |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
| cmu (0.372787) | |
| nep (0.36785) | |
| cut (0.169924) | |
| nje (0.16592) | |
| ski (0.146735) | |
| spl (0.143184) | |
| ova (0.129132) | |
| sug (0.127291) | |
| ese (0.126502) | |
| bla (0.124347) | |
| eep (0.122564) | |
| jca (0.11396) | |
| spc (0.113366) | |
| ldo (0.0970026) |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cmu (0.372787) | |
| nep (0.36785) | |
| cut (0.169924) | |
| nje (0.16592) | |
| ski (0.146735) | |
| spl (0.143184) | |
| ova (0.129132) | |
| sug (0.127291) | |
| ese (0.126502) | |
| bla (0.124347) | |
| eep (0.122564) | |
| jca (0.11396) | |
| spc (0.113366) | |
| ldo (0.0970026) |