Non-Coding RNA Search

Ss1.1-Pig4-TMW8030N18.3

Sequence:


               
               GTTGTTCTTGTTAAGATCTTGTCTGAGTTTTGAATTGGGTGCCACACTTTTTCAGTCAAT
ATGATTGCTTGTTCTACTGTACCATGTATGATTCTTGTCCTTTCCTATGTCCTTCATGAC
AGATTATGATGTGGCTTTATATTGTGCCTTACTTGTACATTTAAAACAAAACGTCTTCAT
TCCCTTCCAATTCCTAAATCTTTCACTTTGACCTTTTTGGTAAGAGAATCAGAGCTATTA
TAAAAACATCATGAAGGATTTCAGATGGGTATGGGTTCAAATTCCCTCTCTTTGTTGTTA
TTTTATATTTGTATGAAAGACCAGTTTTGAATGGTCTTTGAATATGAGAGGGAAGGATGA
GCAGTAATTTCACTACATCCCTTTTTCCTAACTTTCATGAATTTGTCATACATCTTCTTT
CTGATGCTTGACTTTATTTGCTCCTTAGCAATAGTCTGCATTTAAAGAAAGGTGTGTTCA
GTTCATCAGCTTGAAATTGACTATTTCATTTTTCCAGAATTTTTTAGGAGAAGAGTACTC
GTTTTGTTTGTTTTATACAACAGATGACAAGTCTCTTTAAAAGAAACAAAAGTACAGTAC
TTTTGAAATACAATGCTGTTAGTTTGGATTTCTTTTTTATATATAATATTCATACAATTA
TCTGATGTTTGCCTTCATTAATAAAGCTGTTAGTTTATTCACCAAAACGTCAAGAATGGA
TGTGCTTTTCTTTATTCCATACATTTTAAGATATTTTAGCTGCTAAGATTTAGTTAACTT
TCTAAGAAGCGAATTCAAGTTGCCTTCAGCAGGAAATAACAAAAACTTAGGATCCCTTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTGTTCTTGTTAAGATCTTGTCTGAGTTTTGAATTGGGTGCCACACTTTTTCAGTCAAT
ATGATTGCTTGTTCTACTGTACCATGTATGATTCTTGTCCTTTCCTATGTCCTTCATGAC
AGATTATGATGTGGCTTTATATTGTGCCTTACTTGTACATTTAAAACAAAACGTCTTCAT
TCCCTTCCAATTCCTAAATCTTTCACTTTGACCTTTTTGGTAAGAGAATCAGAGCTATTA
TAAAAACATCATGAAGGATTTCAGATGGGTATGGGTTCAAATTCCCTCTCTTTGTTGTTA
TTTTATATTTGTATGAAAGACCAGTTTTGAATGGTCTTTGAATATGAGAGGGAAGGATGA
GCAGTAATTTCACTACATCCCTTTTTCCTAACTTTCATGAATTTGTCATACATCTTCTTT
CTGATGCTTGACTTTATTTGCTCCTTAGCAATAGTCTGCATTTAAAGAAAGGTGTGTTCA
GTTCATCAGCTTGAAATTGACTATTTCATTTTTCCAGAATTTTTTAGGAGAAGAGTACTC
GTTTTGTTTGTTTTATACAACAGATGACAAGTCTCTTTAAAAGAAACAAAAGTACAGTAC
TTTTGAAATACAATGCTGTTAGTTTGGATTTCTTTTTTATATATAATATTCATACAATTA
TCTGATGTTTGCCTTCATTAATAAAGCTGTTAGTTTATTCACCAAAACGTCAAGAATGGA
TGTGCTTTTCTTTATTCCATACATTTTAAGATATTTTAGCTGCTAAGATTTAGTTAACTT
TCTAAGAAGCGAATTCAAGTTGCCTTCAGCAGGAAATAACAAAAACTTAGGATCCCTTTC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               234-512, + strand, RNAz p=0.999096

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               234-512, + strand, RNAz p=0.999096

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               404-493, + strand, RNAmicro p=0.998025

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               404-493, + strand, RNAmicro p=0.998025

Similar Transcript(s): 6 entry(ies)

More info

Similar Transcript(s): 6 entry(ies)

Help | Less info


               
               234-512, LeukoN4_1_A05.b1_A026 Unstimulated peripheral blood leukocytes N4 
(gb|CD464608.1|), blast E-value=0, identity=95.7% 
               

               
               234-512, LeukoN4_1_A05.g1_A026 Unstimulated peripheral blood leukocytes N4 
(gb|CD464649.1|), blast E-value=0, identity=95.7% 
               

               
               234-512, UMC-bmix_0B01-003-g09 Day 3 Corpus Luteum bmix Bos taurus cDNA 3', 
(gb|CV982283.1|), blast E-value=0, identity=97.13% 
               

               
               234-512, CT02040B1E09 Equine Articular Cartilage cDNA Library Equus caballus 
(gb|CX605150.1|), blast E-value=0, identity=95.7% 
               

               
               234-512, LB02816.CR_L04 GC_BGC-28 Bos taurus cDNA clone IMAGE (gb|DV910161.1|), 
blast E-value=0, identity=97.49% 
               

               
               234-512, LB02816.CR_N01 GC_BGC-28 Bos taurus cDNA clone IMAGE (gb|DV910198.1|), 
blast E-value=0, identity=97.49%

Similar Transcript(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               234-512, LeukoN4_1_A05.b1_A026 Unstimulated peripheral blood leukocytes N4 
(gb|CD464608.1|), blast E-value=0, identity=95.7% 
               

               
               234-512, LeukoN4_1_A05.g1_A026 Unstimulated peripheral blood leukocytes N4 
(gb|CD464649.1|), blast E-value=0, identity=95.7% 
               

               
               234-512, UMC-bmix_0B01-003-g09 Day 3 Corpus Luteum bmix Bos taurus cDNA 3', 
(gb|CV982283.1|), blast E-value=0, identity=97.13% 
               

               
               234-512, CT02040B1E09 Equine Articular Cartilage cDNA Library Equus caballus 
(gb|CX605150.1|), blast E-value=0, identity=95.7% 
               

               
               234-512, LB02816.CR_L04 GC_BGC-28 Bos taurus cDNA clone IMAGE (gb|DV910161.1|), 
blast E-value=0, identity=97.49% 
               

               
               234-512, LB02816.CR_N01 GC_BGC-28 Bos taurus cDNA clone IMAGE (gb|DV910198.1|), 
blast E-value=0, identity=97.49%

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-840, gnl|bosTau2|chr3 (61237030-61236190)
               

               
               1-840, gnl|Hg17|chr5 (172496662-172497498)
               

               
               1-840, gnl|Mm7|chr17 (24959399-24960190)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-840, gnl|bosTau2|chr3 (61237030-61236190)
               

               
               1-840, gnl|Hg17|chr5 (172496662-172497498)
               

               
               1-840, gnl|Mm7|chr17 (24959399-24960190)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

Help | Less info


               
               hyp (0.142837)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               clu (0.119646)
               

               
               cty (0.10408)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.142837)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               clu (0.119646)
               

               
               cty (0.10408)

	234-512, LeukoN4_1_A05.b1_A026 Unstimulated peripheral blood leukocytes N4 (gb\|CD464608.1\|), blast E-value=0, identity=95.7%
	234-512, LeukoN4_1_A05.g1_A026 Unstimulated peripheral blood leukocytes N4 (gb\|CD464649.1\|), blast E-value=0, identity=95.7%
	234-512, UMC-bmix_0B01-003-g09 Day 3 Corpus Luteum bmix Bos taurus cDNA 3', (gb\|CV982283.1\|), blast E-value=0, identity=97.13%
	234-512, CT02040B1E09 Equine Articular Cartilage cDNA Library Equus caballus (gb\|CX605150.1\|), blast E-value=0, identity=95.7%
	234-512, LB02816.CR_L04 GC_BGC-28 Bos taurus cDNA clone IMAGE (gb\|DV910161.1\|), blast E-value=0, identity=97.49%
	234-512, LB02816.CR_N01 GC_BGC-28 Bos taurus cDNA clone IMAGE (gb\|DV910198.1\|), blast E-value=0, identity=97.49%

	1-840, gnl\|bosTau2\|chr3 (61237030-61236190)
	1-840, gnl\|Hg17\|chr5 (172496662-172497498)
	1-840, gnl\|Mm7\|chr17 (24959399-24960190)

	hyp (0.142837)
	sug (0.127291)
	tra (0.123092)
	clu (0.119646)
	cty (0.10408)