Non-Coding RNA Search

Ss1.1-Pig4-TMW8030N20.3.5

Sequence:


               
               CCTCGAAGTCCCCACCTTCCTGACCCGACCCGAGGCCCTGGCTTCCCCCAGGAGAGTCGG
GCATCGCGTGGGAGCTCTGGGTGCCCGGGTCCCTGGGCCTCCAGTCGCCCTGGCTCCCAC
CGTGGCCCCCTTCCCGGCGGGGGCGGGCTGTACCGCGTAGGGCCTGGCGGGGCCGGTTGT
CCTCCCGCTTTCACTTCTCCCCGGTCAGTCCATCCACCGCTGTCAGTGACCGTCTAACCA
TGATGCCTTAACATGTGAACGCGTGCTGGGGGGGCGGCCCTAACCTCTAACCCCGTGTCT
GCATGAGCATGTGGTCTCCCCCGGTCCCTGCCCTGTCCGCGCTCCCTGTGGCCCGGGGAG
GTGTGTGGGGTGTGCTGCTCCCCAGTCTGCCCGGGCCTGGCCGGCCCCCCTTCCCCGGCC
AGCGCTGTGGGACGGCTCCTGGGGCTCGGGAAAGCCAAATTGCCAAAACTCCAGTGGCTT
CCACTCCCATCTGGGAGGCTGGGTGTCCTCCCGCCTCTGCCTTCTCTGGCCCGTGGGCAG
TGCCTGGAGCCCAGGCCCCGGCAGAGGGCCCTTGGCCGACGGAGCCAGTGGCCAAGCCTT
ACTTGTCCCACCTGGGCCTGCCGGCCTCGAGTCGCCTGCCTGGCCTGTCAGTATTTCTTG
CCTCCATACGTGCCGTCCTCTGGGCCCACTGGCCTGCCGCCTTGCCCCCAGGCTTGGTGC
CACCATCCCCAGCCAGGCCCTTCCTGGACCCAGCCAGGACAACTGTGGGACCAAGCTTGC
ACAGCTGGAGCCGTCCCCTCTGCCGCCCCCACACCCCCTCCCTGGTCAGGCCCCTGGCCT
AGAACGCACAGGAGCCTGTCCCTGCTTCTCCTTTTCTGACCGGGAAATAAACTCCCCCTA
AGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTCGAAGTCCCCACCTTCCTGACCCGACCCGAGGCCCTGGCTTCCCCCAGGAGAGTCGG
GCATCGCGTGGGAGCTCTGGGTGCCCGGGTCCCTGGGCCTCCAGTCGCCCTGGCTCCCAC
CGTGGCCCCCTTCCCGGCGGGGGCGGGCTGTACCGCGTAGGGCCTGGCGGGGCCGGTTGT
CCTCCCGCTTTCACTTCTCCCCGGTCAGTCCATCCACCGCTGTCAGTGACCGTCTAACCA
TGATGCCTTAACATGTGAACGCGTGCTGGGGGGGCGGCCCTAACCTCTAACCCCGTGTCT
GCATGAGCATGTGGTCTCCCCCGGTCCCTGCCCTGTCCGCGCTCCCTGTGGCCCGGGGAG
GTGTGTGGGGTGTGCTGCTCCCCAGTCTGCCCGGGCCTGGCCGGCCCCCCTTCCCCGGCC
AGCGCTGTGGGACGGCTCCTGGGGCTCGGGAAAGCCAAATTGCCAAAACTCCAGTGGCTT
CCACTCCCATCTGGGAGGCTGGGTGTCCTCCCGCCTCTGCCTTCTCTGGCCCGTGGGCAG
TGCCTGGAGCCCAGGCCCCGGCAGAGGGCCCTTGGCCGACGGAGCCAGTGGCCAAGCCTT
ACTTGTCCCACCTGGGCCTGCCGGCCTCGAGTCGCCTGCCTGGCCTGTCAGTATTTCTTG
CCTCCATACGTGCCGTCCTCTGGGCCCACTGGCCTGCCGCCTTGCCCCCAGGCTTGGTGC
CACCATCCCCAGCCAGGCCCTTCCTGGACCCAGCCAGGACAACTGTGGGACCAAGCTTGC
ACAGCTGGAGCCGTCCCCTCTGCCGCCCCCACACCCCCTCCCTGGTCAGGCCCCTGGCCT
AGAACGCACAGGAGCCTGTCCCTGCTTCTCCTTTTCTGACCGGGAAATAAACTCCCCCTA
AGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-904, gnl|bosTau2|chr19 (45385896-45384993)
               

               
               1-904, gnl|Hg17|chr17 (77419755-77418886)
               

               
               1-904, gnl|Mm7|chr11 (120688011-120687157)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-904, gnl|bosTau2|chr19 (45385896-45384993)
               

               
               1-904, gnl|Hg17|chr17 (77419755-77418886)
               

               
               1-904, gnl|Mm7|chr11 (120688011-120687157)

Expressed library(ies): 29 entry(ies)

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Expressed library(ies): 29 entry(ies)

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               cag (0.907167)
               

               
               col (0.780031)
               

               
               eru (0.480192)
               

               
               med (0.465008)
               

               
               nlu (0.383362)
               

               
               fty (0.351679)
               

               
               hyp (0.285673)
               

               
               pty (0.285429)
               

               
               ese (0.253004)
               

               
               ebs (0.236602)
               

               
               jca (0.22792)
               

               
               cty (0.20816)
               

               
               fli (0.202881)
               

               
               jej (0.197844)
               

               
               fcc (0.197785)
               

               
               ill (0.175593)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               cst (0.140036)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               eep (0.122564)
               

               
               clu (0.119646)

Expressed library(ies): 29 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cag (0.907167)
               

               
               col (0.780031)
               

               
               eru (0.480192)
               

               
               med (0.465008)
               

               
               nlu (0.383362)
               

               
               fty (0.351679)
               

               
               hyp (0.285673)
               

               
               pty (0.285429)
               

               
               ese (0.253004)
               

               
               ebs (0.236602)
               

               
               jca (0.22792)
               

               
               cty (0.20816)
               

               
               fli (0.202881)
               

               
               jej (0.197844)
               

               
               fcc (0.197785)
               

               
               ill (0.175593)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               cst (0.140036)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               eep (0.122564)
               

               
               clu (0.119646)

	1-904, gnl\|bosTau2\|chr19 (45385896-45384993)
	1-904, gnl\|Hg17\|chr17 (77419755-77418886)
	1-904, gnl\|Mm7\|chr11 (120688011-120687157)

	cag (0.907167)
	col (0.780031)
	eru (0.480192)
	med (0.465008)
	nlu (0.383362)
	fty (0.351679)
	hyp (0.285673)
	pty (0.285429)
	ese (0.253004)
	ebs (0.236602)
	jca (0.22792)
	cty (0.20816)
	fli (0.202881)
	jej (0.197844)
	fcc (0.197785)
	ill (0.175593)
	duo (0.172801)
	mcp (0.170648)
	eye (0.170503)
	nje (0.16592)
	nco (0.161734)
	csp (0.161186)
	cli (0.152812)
	cst (0.140036)
	nca (0.136874)
	pla (0.133672)
	ute (0.132784)
	eep (0.122564)
	clu (0.119646)