Non-Coding RNA Search

Ss1.1-Pig4-TMW8030N24.3

Sequence:


               
               CTCCCAGCCACATCCCCAGCGTGGTGGTGCTGCCCATCACGCAGCAGGGTTACCAGCATG
AGTACGTGGACCAGCCCAAAATGAGCGAGGTGGCCCAGATGGCGTTGGAGGACCAGGCAG
CCACCCTGGAGTATAAGACCATCAAGGAACACCTCAGCAGCAAGAGTCCCAACCATGGCG
TGAACCTGCTGGAGAACCTGGACAGCCTGCCCCCCAAAGTCCCCCAGCGGGAGGCCTCCC
TGGGCCCTCCCGGAGCCTCCCTGTCTCAGAATGGCCTGAGCAAGCGGCTAGAGATGCACC
ACTCCTCATCCTACGGGCTTGACTATAAGAGGAGCTACCCCACGAACTCGCTCACGAGAA
GCCACCAGGCCGCCACACTCAAAAGAAACAATACTAACTCCTCCAATTCCTCCCACCTCT
CCAGAAACCAGAGCTTTGGCCGGGGGGATAACCCGCCCCCCGCCCCGCAGAGGGTGGACT
CCATCCAGGTGCACAGCTCGCAGCCCTCTGGCCAGGCCGTGACTGTTTCGAGGCAGCCAA
GCCTCAATGCCTACAACTCACTGACCAGGGCGGGGCTGAAACGCACCCCTTCGCTAAAGC
CGGACGTGCCCCCGAAACCTTCCTTTGCCCCCCTTTCCACATCCATGAAGCCCAATGACG
CGTGTACATAATCCCAGGGGGAGGGGGTCGGGGTCGAACCAGCAGGAAAGGCGAGGAGCC
CGCTCAGCTCGGCAAGGTTCGCGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCCCAGCCACATCCCCAGCGTGGTGGTGCTGCCCATCACGCAGCAGGGTTACCAGCATG
AGTACGTGGACCAGCCCAAAATGAGCGAGGTGGCCCAGATGGCGTTGGAGGACCAGGCAG
CCACCCTGGAGTATAAGACCATCAAGGAACACCTCAGCAGCAAGAGTCCCAACCATGGCG
TGAACCTGCTGGAGAACCTGGACAGCCTGCCCCCCAAAGTCCCCCAGCGGGAGGCCTCCC
TGGGCCCTCCCGGAGCCTCCCTGTCTCAGAATGGCCTGAGCAAGCGGCTAGAGATGCACC
ACTCCTCATCCTACGGGCTTGACTATAAGAGGAGCTACCCCACGAACTCGCTCACGAGAA
GCCACCAGGCCGCCACACTCAAAAGAAACAATACTAACTCCTCCAATTCCTCCCACCTCT
CCAGAAACCAGAGCTTTGGCCGGGGGGATAACCCGCCCCCCGCCCCGCAGAGGGTGGACT
CCATCCAGGTGCACAGCTCGCAGCCCTCTGGCCAGGCCGTGACTGTTTCGAGGCAGCCAA
GCCTCAATGCCTACAACTCACTGACCAGGGCGGGGCTGAAACGCACCCCTTCGCTAAAGC
CGGACGTGCCCCCGAAACCTTCCTTTGCCCCCCTTTCCACATCCATGAAGCCCAATGACG
CGTGTACATAATCCCAGGGGGAGGGGGTCGGGGTCGAACCAGCAGGAAAGGCGAGGAGCC
CGCTCAGCTCGGCAAGGTTCGCGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61869146|ref|XP_594148.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61869146|ref|XP_594148.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               3-159, - strand, RNAz p=0.764017
               

               
               360-593, - strand, RNAz p=0.788707

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               3-159, - strand, RNAz p=0.764017
               

               
               360-593, - strand, RNAz p=0.788707

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-740, gnl|bosTau2|chr7 (25545600-25544848)
               

               
               3-740, gnl|Hg17|chr5 (115810876-115810138)
               

               
               3-740, gnl|Mm7|chr18 (47626542-47625801)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-740, gnl|bosTau2|chr7 (25545600-25544848)
               

               
               3-740, gnl|Hg17|chr5 (115810876-115810138)
               

               
               3-740, gnl|Mm7|chr18 (47626542-47625801)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fbs (0.175346)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.175346)

	3-159, - strand, RNAz p=0.764017
	360-593, - strand, RNAz p=0.788707

	3-740, gnl\|bosTau2\|chr7 (25545600-25544848)
	3-740, gnl\|Hg17\|chr5 (115810876-115810138)
	3-740, gnl\|Mm7\|chr18 (47626542-47625801)