Ss1.1-Pig4-TMW8030O01.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCTTTTAGAAAGTCAAGGACATTTATTTCCTGAGGTCGTGACACAGGAAGTGGACGCGG CCGCAGCTGCAGCGCTCTCCCGGGGAGGCCGGAGCCGGGGCAGGCCGGGTGGATGACGCG GGCCTCCGCGGGGCTCGTGCGGCCGCCGCCCCAGCACAGAGGTCGGGAGCAGAGCCTGTG CCGGGGGCGGCCAGGCCTGAGACCCGGCCGCCAGGGCGCGGGCCACGCCGGCTTCGCTGT GAGACCTCGGGGAAGGGGCGTCAAGAATTTGCGGAGGGTCCAGCCGCTGGGTCGGATTGA GACGGACCATCGTGTGGCGGGTTCAGGTCAGCAGGCTGGAGAGGTTTCTGCTTGTCGAGC ATTATCGTTTGGGGCCCCAGGGGAGGGTCTTGGGGGCCACCTGAGCCCCGAAGCTGGGGA ACTCCTCCGAGCTGCTCATGTCGGGGGCCTTCTCGCTGCTGCTGGCGGTCCAGGGGGCGT CCCGCACCACGAAGCCCCTGGACGGCGCCTTGGCCTCCTCGTGGGCCGGGGGCTTCATGT ACAGCTGCAGCGCCTCGGTGTCCACCACGTCGGCCAGGTATTCCTCCTCCAGGTTGAGGA TGTGGTCGATGGCTTCCTCCACGTTCTCCGGCAGCCCCGTCACGGTGACGCAGTTGGGGT CGGGGGCCCCGCTCTGCGGGAAGCGAATGTCCACCTTGAACTCATCCATGATCTTGCGGA TGGCTTTGCCGCGGGCACCGATGATGCGGGCGTGGACGCGGTGGTCGAGCGGCACGTCCT CAGAAACCATCTGCTCGAGCTCCCCCACGATCTTGAGGATGGCGTCCCGGGCGGCCTCGG TGTTCTTCTCGTAGCCCGTGATGGTGATGTGGTCCTGCGGCTGGCTCCCATCGTCCTTAT CAGGAAACTGGATGTTGACGTCGTGCTCCAGGCGGATCTGGGTGATCACCGCCCCCTTCC GCCCGATGATCTTGGGGTGGTACTTGGGGTCAACGGTGACGCTCAGCTTGAAGCTCCGCA AAGCCCGGTCTTCCTGCTCCGCCTGCAGCTCCTTCACCCGCTCCAGCAGCCCAGCCTTGG CCCGGTCCAGGTTGGCAGCCAGGCCCGTGATGGCGATGACGCCTGACTGCAGCTCGGGGG CCGGGACGTGAATATTCACCTCAAACTCGTCCATCATCCTGCGGATCCCGCTCCCCTTCT GGCCGATGATGTACCGGTGAAGGTCAAGGGGCACCTCCACCTCAATGGTGACGGGAACCA GGGCCTCAAGGGCCTCCTTGGCGGCCTCGCACTTCTCCTTCCGGCCGGAGATGGTGATGA TGTCGCATCTCCTGGGGGAGCCGGGCTCGGCCTCCTTCCCGTCTCTCCCCTCCCCGGGGT CGTCGCCGTTCTCCTGGACGGCTGGCTCCGTGCCGTGCGCTGGGTTCTCCTCTCTGTCTG GGAATTTAATCTGAACGTTATGGTCGCGAGTTATCTGCTGGATTCTGGAACCTTTGGGGC CCATGACCGAGCGATGGAACTTCTGGGGAATGGCGCACTCTATGGTCACCTGGGCTTCCA GGTCCTCGATGATCTCCTGAATGCGCTTATTGGCCGCCTCCACGCAGTCCTCGGCCCCCT TCAGGGTGACTCTGTCGCTCTGCGTGCCGGAGCGGGGGAAGCTAACCATCACCCCGCCGT ACTCCTCCGCGATCTCCCGCAGGACCTGGCCTCGTCGGATGACAAAGTGACGGTGGTGCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCTTTTAGAAAGTCAAGGACATTTATTTCCTGAGGTCGTGACACAGGAAGTGGACGCGG CCGCAGCTGCAGCGCTCTCCCGGGGAGGCCGGAGCCGGGGCAGGCCGGGTGGATGACGCG GGCCTCCGCGGGGCTCGTGCGGCCGCCGCCCCAGCACAGAGGTCGGGAGCAGAGCCTGTG CCGGGGGCGGCCAGGCCTGAGACCCGGCCGCCAGGGCGCGGGCCACGCCGGCTTCGCTGT GAGACCTCGGGGAAGGGGCGTCAAGAATTTGCGGAGGGTCCAGCCGCTGGGTCGGATTGA GACGGACCATCGTGTGGCGGGTTCAGGTCAGCAGGCTGGAGAGGTTTCTGCTTGTCGAGC ATTATCGTTTGGGGCCCCAGGGGAGGGTCTTGGGGGCCACCTGAGCCCCGAAGCTGGGGA ACTCCTCCGAGCTGCTCATGTCGGGGGCCTTCTCGCTGCTGCTGGCGGTCCAGGGGGCGT CCCGCACCACGAAGCCCCTGGACGGCGCCTTGGCCTCCTCGTGGGCCGGGGGCTTCATGT ACAGCTGCAGCGCCTCGGTGTCCACCACGTCGGCCAGGTATTCCTCCTCCAGGTTGAGGA TGTGGTCGATGGCTTCCTCCACGTTCTCCGGCAGCCCCGTCACGGTGACGCAGTTGGGGT CGGGGGCCCCGCTCTGCGGGAAGCGAATGTCCACCTTGAACTCATCCATGATCTTGCGGA TGGCTTTGCCGCGGGCACCGATGATGCGGGCGTGGACGCGGTGGTCGAGCGGCACGTCCT CAGAAACCATCTGCTCGAGCTCCCCCACGATCTTGAGGATGGCGTCCCGGGCGGCCTCGG TGTTCTTCTCGTAGCCCGTGATGGTGATGTGGTCCTGCGGCTGGCTCCCATCGTCCTTAT CAGGAAACTGGATGTTGACGTCGTGCTCCAGGCGGATCTGGGTGATCACCGCCCCCTTCC GCCCGATGATCTTGGGGTGGTACTTGGGGTCAACGGTGACGCTCAGCTTGAAGCTCCGCA AAGCCCGGTCTTCCTGCTCCGCCTGCAGCTCCTTCACCCGCTCCAGCAGCCCAGCCTTGG CCCGGTCCAGGTTGGCAGCCAGGCCCGTGATGGCGATGACGCCTGACTGCAGCTCGGGGG CCGGGACGTGAATATTCACCTCAAACTCGTCCATCATCCTGCGGATCCCGCTCCCCTTCT GGCCGATGATGTACCGGTGAAGGTCAAGGGGCACCTCCACCTCAATGGTGACGGGAACCA GGGCCTCAAGGGCCTCCTTGGCGGCCTCGCACTTCTCCTTCCGGCCGGAGATGGTGATGA TGTCGCATCTCCTGGGGGAGCCGGGCTCGGCCTCCTTCCCGTCTCTCCCCTCCCCGGGGT CGTCGCCGTTCTCCTGGACGGCTGGCTCCGTGCCGTGCGCTGGGTTCTCCTCTCTGTCTG GGAATTTAATCTGAACGTTATGGTCGCGAGTTATCTGCTGGATTCTGGAACCTTTGGGGC CCATGACCGAGCGATGGAACTTCTGGGGAATGGCGCACTCTATGGTCACCTGGGCTTCCA GGTCCTCGATGATCTCCTGAATGCGCTTATTGGCCGCCTCCACGCAGTCCTCGGCCCCCT TCAGGGTGACTCTGTCGCTCTGCGTGCCGGAGCGGGGGAAGCTAACCATCACCCCGCCGT ACTCCTCCGCGATCTCCCGCAGGACCTGGCCTCGTCGGATGACAAAGTGACGGTGGTGCC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 54 entry(ies) | More info |
| Aligned organism(s): 54 entry(ies) | Help | Less info |
| 1-474, gnl|bosTau2|chr26 (31997436-31996970) | |
| 1-474, gnl|Hg17|chr2 (241888620-241889101) | |
| 1-474, gnl|Mm7|chr1 (93315575-93316069) | |
| 692-883, gnl|bosTau2|chr3 (82781061-82780870) | |
| 692-883, gnl|canFam2|chr25 (54179534-54179351) | |
| 692-883, gnl|canFam2|chr25 (54179347-54179530) | |
| 692-883, gnl|danRer3|chrUn (33309285-33309464) | |
| 692-883, gnl|danRer3|chrUn (33309468-33309285) | |
| 692-883, gnl|dasNov1|scaffold_100934 (2766-2950) | |
| 692-883, gnl|dasNov1|scaffold_142815 (4008-3847) | |
| 692-883, gnl|fr1|chrUn (227743188-227743459) | |
| 692-883, gnl|fr1|chrUn (227743463-227743282) | |
| 692-883, gnl|galGal2|chr9 (8669639-8669822) | |
| 692-883, gnl|galGal2|chr9 (8669826-8669643) | |
| 692-883, gnl|hg17|chr1 (118967839-118968014) | |
| 692-883, gnl|hg17|chr2 (241890163-241890346) | |
| 692-883, gnl|Hg17|chr2 (241890161-241890352) | |
| 692-883, gnl|loxAfr1|scaffold_80607 (7253-7436) | |
| 692-883, gnl|loxAfr1|scaffold_9560 (45640-45823) | |
| 692-883, gnl|mm7|chr1 (93316946-93316763) | |
| 692-883, gnl|mm7|chr1 (93316759-93316942) | |
| 692-883, gnl|Mm7|chr1 (93316757-93316948) | |
| 692-883, gnl|monDom2|scaffold_69 (8604243-8604060) | |
| 692-883, gnl|monDom2|scaffold_69 (8604056-8604239) | |
| 692-883, gnl|oryCun1|scaffold_177688 (45045-44862) | |
| 692-883, gnl|oryCun1|scaffold_177688 (44858-45041) | |
| 692-883, gnl|panTro1|chr1 (118818823-118818998) | |
| 692-883, gnl|panTro1|chr13 (133364477-133364660) | |
| 692-883, gnl|rheMac2|chr1 (121640793-121640968) | |
| 692-883, gnl|rheMac2|chr1 (121640972-121640797) | |
| 692-883, gnl|rn3|chr9 (92893861-92893678) | |
| 692-883, gnl|rn3|chr9 (92893674-92893857) | |
| 692-883, gnl|tetNig1|chrUn_random (101266382-101266203) | |
| 692-883, gnl|tetNig1|chrUn_random (101266199-101266382) | |
| 692-883, gnl|xenTro1|scaffold_382 (1153627-1153810) | |
| 1024-1161, gnl|bosTau2|chr3 (82779274-82779137) | |
| 1024-1161, gnl|canFam2|chr25 (54181964-54182107) | |
| 1024-1161, gnl|danRer3|chrUn (33308918-33308777) | |
| 1024-1161, gnl|dasNov1|scaffold_100934 (3693-3827) | |
| 1024-1161, gnl|echTel1|scaffold_306526 (5935-6078) | |
| 1024-1161, gnl|fr1|chrUn (227742926-227742783) | |
| 1024-1161, gnl|galGal2|chr9 (8668748-8668607) | |
| 1024-1161, gnl|hg17|chr2 (241894520-241894663) | |
| 1024-1161, gnl|Hg17|chr2 (241894525-241894662) | |
| 1024-1161, gnl|loxAfr1|scaffold_9560 (45968-46098) | |
| 1024-1161, gnl|mm7|chr1 (93321294-93321437) | |
| 1024-1161, gnl|Mm7|chr1 (93321299-93321436) | |
| 1024-1161, gnl|monDom2|scaffold_69 (8608096-8608233) | |
| 1024-1161, gnl|oryCun1|scaffold_177688 (48527-48670) | |
| 1024-1161, gnl|panTro1|chr13 (133369123-133369266) | |
| 1024-1161, gnl|rheMac2|chr12 (105151416-105151559) | |
| 1024-1161, gnl|rn3|chr9 (92897155-92897298) | |
| 1024-1161, gnl|tetNig1|chrUn_random (101266774-101266917) | |
| 1024-1161, gnl|xenTro1|scaffold_382 (1154638-1154781) |
| Aligned organism(s): 54 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-474, gnl|bosTau2|chr26 (31997436-31996970) | |
| 1-474, gnl|Hg17|chr2 (241888620-241889101) | |
| 1-474, gnl|Mm7|chr1 (93315575-93316069) | |
| 692-883, gnl|bosTau2|chr3 (82781061-82780870) | |
| 692-883, gnl|canFam2|chr25 (54179534-54179351) | |
| 692-883, gnl|canFam2|chr25 (54179347-54179530) | |
| 692-883, gnl|danRer3|chrUn (33309285-33309464) | |
| 692-883, gnl|danRer3|chrUn (33309468-33309285) | |
| 692-883, gnl|dasNov1|scaffold_100934 (2766-2950) | |
| 692-883, gnl|dasNov1|scaffold_142815 (4008-3847) | |
| 692-883, gnl|fr1|chrUn (227743188-227743459) | |
| 692-883, gnl|fr1|chrUn (227743463-227743282) | |
| 692-883, gnl|galGal2|chr9 (8669639-8669822) | |
| 692-883, gnl|galGal2|chr9 (8669826-8669643) | |
| 692-883, gnl|hg17|chr1 (118967839-118968014) | |
| 692-883, gnl|hg17|chr2 (241890163-241890346) | |
| 692-883, gnl|Hg17|chr2 (241890161-241890352) | |
| 692-883, gnl|loxAfr1|scaffold_80607 (7253-7436) | |
| 692-883, gnl|loxAfr1|scaffold_9560 (45640-45823) | |
| 692-883, gnl|mm7|chr1 (93316946-93316763) | |
| 692-883, gnl|mm7|chr1 (93316759-93316942) | |
| 692-883, gnl|Mm7|chr1 (93316757-93316948) | |
| 692-883, gnl|monDom2|scaffold_69 (8604243-8604060) | |
| 692-883, gnl|monDom2|scaffold_69 (8604056-8604239) | |
| 692-883, gnl|oryCun1|scaffold_177688 (45045-44862) | |
| 692-883, gnl|oryCun1|scaffold_177688 (44858-45041) | |
| 692-883, gnl|panTro1|chr1 (118818823-118818998) | |
| 692-883, gnl|panTro1|chr13 (133364477-133364660) | |
| 692-883, gnl|rheMac2|chr1 (121640793-121640968) | |
| 692-883, gnl|rheMac2|chr1 (121640972-121640797) | |
| 692-883, gnl|rn3|chr9 (92893861-92893678) | |
| 692-883, gnl|rn3|chr9 (92893674-92893857) | |
| 692-883, gnl|tetNig1|chrUn_random (101266382-101266203) | |
| 692-883, gnl|tetNig1|chrUn_random (101266199-101266382) | |
| 692-883, gnl|xenTro1|scaffold_382 (1153627-1153810) | |
| 1024-1161, gnl|bosTau2|chr3 (82779274-82779137) | |
| 1024-1161, gnl|canFam2|chr25 (54181964-54182107) | |
| 1024-1161, gnl|danRer3|chrUn (33308918-33308777) | |
| 1024-1161, gnl|dasNov1|scaffold_100934 (3693-3827) | |
| 1024-1161, gnl|echTel1|scaffold_306526 (5935-6078) | |
| 1024-1161, gnl|fr1|chrUn (227742926-227742783) | |
| 1024-1161, gnl|galGal2|chr9 (8668748-8668607) | |
| 1024-1161, gnl|hg17|chr2 (241894520-241894663) | |
| 1024-1161, gnl|Hg17|chr2 (241894525-241894662) | |
| 1024-1161, gnl|loxAfr1|scaffold_9560 (45968-46098) | |
| 1024-1161, gnl|mm7|chr1 (93321294-93321437) | |
| 1024-1161, gnl|Mm7|chr1 (93321299-93321436) | |
| 1024-1161, gnl|monDom2|scaffold_69 (8608096-8608233) | |
| 1024-1161, gnl|oryCun1|scaffold_177688 (48527-48670) | |
| 1024-1161, gnl|panTro1|chr13 (133369123-133369266) | |
| 1024-1161, gnl|rheMac2|chr12 (105151416-105151559) | |
| 1024-1161, gnl|rn3|chr9 (92897155-92897298) | |
| 1024-1161, gnl|tetNig1|chrUn_random (101266774-101266917) | |
| 1024-1161, gnl|xenTro1|scaffold_382 (1154638-1154781) |
| Expressed library(ies): 16 entry(ies) | More info |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
| pla (2.13875) | |
| eru (0.60024) | |
| amn (0.417711) | |
| nca (0.410621) | |
| nlu (0.383362) | |
| eep (0.367692) | |
| csp (0.322373) | |
| hyp (0.285673) | |
| pty (0.285429) | |
| cga (0.279096) | |
| nco (0.161734) | |
| cag (0.151194) | |
| ute (0.132784) | |
| ecc (0.115035) | |
| jej (0.0989218) | |
| eje (0.0988338) |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (2.13875) | |
| eru (0.60024) | |
| amn (0.417711) | |
| nca (0.410621) | |
| nlu (0.383362) | |
| eep (0.367692) | |
| csp (0.322373) | |
| hyp (0.285673) | |
| pty (0.285429) | |
| cga (0.279096) | |
| nco (0.161734) | |
| cag (0.151194) | |
| ute (0.132784) | |
| ecc (0.115035) | |
| jej (0.0989218) | |
| eje (0.0988338) |