Non-Coding RNA Search

Ss1.1-Pig4-TMW8030O05.5

Sequence:


               
               ACGGGACGCTGCTTCCAGATGCCACCTGGCAGCAATGCCTTCCCCTTTCTACAGGACATT
GTGTGGCATTCAGGGTCAGGCAGGCAGTGGGAGGTGCCTTGATGAGAAAGACATGCTGGG
TGGGGCTGGGAGAGGACAATTATTGACAGTGATGTGCAATGAAGTGACAAGATGAGAGCA
GAATAATAAGAGCTTTGAATTTGAAGTGATTTTTTTTCATAAGTTATTTATTCCTTTTTT
CTGTGTAAATATATTTATTTTACTGGGGAGTTCTAACAACATCTGGATCGTAACCTGAGC
GGAATGTATGGTAGGAATGTACTCTCTTGGAGGAATGTCAATCTGTATTAAAAAGGGGTC
CGAGCCAGACCCCGGGGTCTTCTCATCGTGTGCACAGTCCGTGTTCATTTTCACTCTCGC
CTCTAATATGGGTCTATTTGAAATATGCAAAAGGGATGGATGAGGAATGTTTTAATACCT
CCAAATTTTTAAGAAAATCAAGCATCAAAGGGTTGATATTTTTAAACTTGTTTTTAGTCG
CACTTTCTCTTTATGACAGAAGGGGCAACCACACCTGACACCCTCGTTCACACCAAAGGG
TCTTTCTCAATTGTGCTGTTTATTGCCATAACCCTTGGAGTGTCCCAACTGCCCTGAGGT
CAGTCAAGGAAAATTTCTTAAATACGCTCCCAAGAGCCAAAGTGTCAACTTTACAGATCA
TTTTTAAAGCTTAAATGTATTAAACACCTTTGTGGTAAACAGTGAACTATGAATCCACAG
GGCAGCATTCTCAAATGACAGAGGTTTTAAAAAAGAGAGAGAGAGAGAGACTCTACTTTG
TGCAGCGATTGTAATTCTCTATATGAATTGTCTTAATTTCAAAATCTTGCTGTTACAAAT
TGGACCTTTACACGCTTTATGAAAATATTTGCAAAGAGCCTATTTAACCTGTTCTGGCTG
TAAATGGTTAACTTCCTGTAACTGCCAGCGGCAGTGAGGTGTGCGCGTCCTGCTAATGTA
CAGTTGTTTTCAGGGCTCCTAAGAATGAGTCTGAATGGTTCTTGAAAATTAGCCAGGATC
AAATGCTGTCACAAACAAAGCCAATAAAAATTGTGGACGTCTTTTTGGGCATAACAAGTT
TGGAAGAGAAGTGCAGTCCAGACAAGCAAACCACCAAGATTTGGAAAAGATGTACATAGT
GACATGTTTGGTGCATGGTTTTTGAGGAGGGCTTTTGTCAGAAAGGAGGTGTAACCTTTC
CCCCACAGACCTGAGAGCTGTGCCTTTTCTATGCAATATTACAGACCTTACATCGGAACC
CAGATGGCTGTATTCACATGTAAGTTCGGGCTGTAATCTAAACAATTGGACAGATTAAAT
GTACATGGAAATGAGCAGTCTTACTTTTGTAGTTTTATATTATACAATAAACAGTTAAAA
GATGAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACGGGACGCTGCTTCCAGATGCCACCTGGCAGCAATGCCTTCCCCTTTCTACAGGACATT
GTGTGGCATTCAGGGTCAGGCAGGCAGTGGGAGGTGCCTTGATGAGAAAGACATGCTGGG
TGGGGCTGGGAGAGGACAATTATTGACAGTGATGTGCAATGAAGTGACAAGATGAGAGCA
GAATAATAAGAGCTTTGAATTTGAAGTGATTTTTTTTCATAAGTTATTTATTCCTTTTTT
CTGTGTAAATATATTTATTTTACTGGGGAGTTCTAACAACATCTGGATCGTAACCTGAGC
GGAATGTATGGTAGGAATGTACTCTCTTGGAGGAATGTCAATCTGTATTAAAAAGGGGTC
CGAGCCAGACCCCGGGGTCTTCTCATCGTGTGCACAGTCCGTGTTCATTTTCACTCTCGC
CTCTAATATGGGTCTATTTGAAATATGCAAAAGGGATGGATGAGGAATGTTTTAATACCT
CCAAATTTTTAAGAAAATCAAGCATCAAAGGGTTGATATTTTTAAACTTGTTTTTAGTCG
CACTTTCTCTTTATGACAGAAGGGGCAACCACACCTGACACCCTCGTTCACACCAAAGGG
TCTTTCTCAATTGTGCTGTTTATTGCCATAACCCTTGGAGTGTCCCAACTGCCCTGAGGT
CAGTCAAGGAAAATTTCTTAAATACGCTCCCAAGAGCCAAAGTGTCAACTTTACAGATCA
TTTTTAAAGCTTAAATGTATTAAACACCTTTGTGGTAAACAGTGAACTATGAATCCACAG
GGCAGCATTCTCAAATGACAGAGGTTTTAAAAAAGAGAGAGAGAGAGAGACTCTACTTTG
TGCAGCGATTGTAATTCTCTATATGAATTGTCTTAATTTCAAAATCTTGCTGTTACAAAT
TGGACCTTTACACGCTTTATGAAAATATTTGCAAAGAGCCTATTTAACCTGTTCTGGCTG
TAAATGGTTAACTTCCTGTAACTGCCAGCGGCAGTGAGGTGTGCGCGTCCTGCTAATGTA
CAGTTGTTTTCAGGGCTCCTAAGAATGAGTCTGAATGGTTCTTGAAAATTAGCCAGGATC
AAATGCTGTCACAAACAAAGCCAATAAAAATTGTGGACGTCTTTTTGGGCATAACAAGTT
TGGAAGAGAAGTGCAGTCCAGACAAGCAAACCACCAAGATTTGGAAAAGATGTACATAGT
GACATGTTTGGTGCATGGTTTTTGAGGAGGGCTTTTGTCAGAAAGGAGGTGTAACCTTTC
CCCCACAGACCTGAGAGCTGTGCCTTTTCTATGCAATATTACAGACCTTACATCGGAACC
CAGATGGCTGTATTCACATGTAAGTTCGGGCTGTAATCTAAACAATTGGACAGATTAAAT
GTACATGGAAATGAGCAGTCTTACTTTTGTAGTTTTATATTATACAATAAACAGTTAAAA
GATGAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               3-601, gnl|bosTau2|chr11 (45502321-45501727)
               

               
               3-601, gnl|Hg17|chr2 (64771863-64771294)
               

               
               3-601, gnl|Mm7|chr11 (20603642-20604212)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-601, gnl|bosTau2|chr11 (45502321-45501727)
               

               
               3-601, gnl|Hg17|chr2 (64771863-64771294)
               

               
               3-601, gnl|Mm7|chr11 (20603642-20604212)

Expressed library(ies): 14 entry(ies)

More info

Expressed library(ies): 14 entry(ies)

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               thg (0.380373)
               

               
               sin (0.349895)
               

               
               liv (0.292569)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               rec (0.17307)
               

               
               csk (0.140746)
               

               
               ova (0.129132)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               jca (0.11396)
               

               
               spc (0.113366)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.380373)
               

               
               sin (0.349895)
               

               
               liv (0.292569)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               rec (0.17307)
               

               
               csk (0.140746)
               

               
               ova (0.129132)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               jca (0.11396)
               

               
               spc (0.113366)

	3-601, gnl\|bosTau2\|chr11 (45502321-45501727)
	3-601, gnl\|Hg17\|chr2 (64771863-64771294)
	3-601, gnl\|Mm7\|chr11 (20603642-20604212)

	thg (0.380373)
	sin (0.349895)
	liv (0.292569)
	fcc (0.197785)
	aor (0.195274)
	sag (0.182715)
	gul (0.177588)
	rec (0.17307)
	csk (0.140746)
	ova (0.129132)
	bla (0.124347)
	eep (0.122564)
	jca (0.11396)
	spc (0.113366)