Ss1.1-Pig4-TMW8030O11.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCTGTGGTTCTCAAAGGATGGCTTCAGCGGGATCGAGGATGATGCTGACGAGGCCCTGG AGATCAGCCAGGCACAGCTGTTGTACGAGAGCCGTCGCAAGGGGCAGCAGCCACTGCCAG CACCTTCCAGCGTGAAGACTGAGAGAAAACCACCCCCATGCCAGGGTGAGGCCCCTGAAG GGGCAGGGGCTCCTTCAGGGACAGAGGCTGCCACAGGCCCTGGCGGGGAAGCCAGAGATA GCAGCTCTGACAGCGACAGCAGCAGCAGTGAGGATGAAGACACTTGGAAACCACGCAGTC AGAAGCGAAGACGGGGGCCTGAGGCAGGGGATGACGACGGGTTTGAGATCGTGCCCATTG AGGACCCAGCGAGACATCGGATACTGGACCCTGAAGGCCTGGCTCTAGGCGCCATTATTG CCTCTTCCAAAAAAGCCAAGAGAGACCTCATAGATGACTCCTTCAGCCGGTACACATTTA ATGAGGATGAGGGGGAGCTTCCAGAGTGGTTTGTGCAGGAGGAGAAGCAGCACAGGATAC GACAGCTGCCTCTTGATAAGAAGGAGGTGGAGTATTACAGGAAACGCTGGCGGGAAATCA ACGCCCGTCCCATCAAGAAAGTGGCTGAGGCTAAGGCCAGAAAGAAACGGAGGATGCTGA AGAAGCTGGAGCAGACCAAGAAGAAGGCAGAAGCTGTGGTCAACACGGTGGACATCTCAG AGCGGGAGAAAGTGGCACAGCTTCGAAGTCTCTACAAGAAGGCGGGGCTTGGAAAGGAGA AACGCCAGGTCACCTATGTCGTAGCCAAAAAAGGTGTGGGCCGCAAAGTACGCCGACCAG CTGGAGTCAGAGGTCACTTCAAGGTGGTGGACTCGAGGATGAAGAAAGACCAAAGAGCAC AGCAACGGAAGGAGCAGAAGAAAAAGCACAAGCGCAAGTGAGCAGAGCTGCAGGACTTCC AGCAGGACTGTGTAAGGACGAGGCCTTCCGCCTCCTCAGTACCATCCCGTCCCTTGTTGC CAGCATCACAGTGTGAAAAGACAGGTGCCGGGCACTTGGGGGTGGTCCTGTGCTGTGAGG GGGACGTCTTCCTGGCTGGAAGAAGGGCTCCTGTTAACATGCCACTGAAATGTCCTGTTG GCACCATCCCAGACCCCACAACCGTTGTGGGGTAAGAAAATCACACCCTTTTTAAATCCT AAGCGGGGGAGTTCAGTGTTGGGATGGCACGTGCTGTAGTCTGCTCCTGGGCAGGTGGGC ATCATCTGAATAAAATCAGGATGATCAGTGCGTGGTAACTGTTGACACCACGTGCTGCAC TGTTCCAGATCACAGTTAATACGTACCGACTCGTGGTGAAGTAAATGACAAACAATCCAC AGGTCCCAGTAGTAAACCATTTACTAGAGCAAGCAGAAAGGAATGCACATCTTAAAGAAA CCTTCACAAAGTCACAAAATTTGAAGTACGTATATTTTTCCTTTTATAAACAAGATAGAA CAAAAATCATCAAAATCATTTCAGCAAAAGATTCTTCTACCATTGTGGCAAGTTAAAAAA AATACAGTGAAATAGGAGAAGACACTTTAAAAGCTGTTGTTGGATTTTTGCTTAATTTTC CATTTAGCAACATTTCAGGCCCAGCGCGGCTCTGGGTCTGGCAGGCTGCTGCTTCCTGTC TCAGGGCTGGGGAACCTGAGCATCACTTTTCCCTCAGAATCAGACATCTCCCTTCCCTGC AAATGTTTGGATGCACCAAAGTGCTTCCCACACATCCCTAACACCTCTGTGGATTGGGTT CGTAGGAGCAGCCAACTCCTGCAAAGGGGTCTGCCTGGCCACAGAAAAAGAACTTTATTT GTAGATGTTTTTAAGGTGACATTTTAGTAAAAAATATGCACTACATAGAATATAAACCTA GAATGAGTTTTGTGCCTTATAAGGCCCTTTCTTCCAAGGTTTCCTCAACTGACCCTCATG ACAACTCACCCAGAGCCAAAAGAAGCTTCTCAGGTCTCACTTCTAAGGACCAAAGCAGCT TCCCAAAAACATCTGAAAAATGACCCAGAAGAGGGGGTAATGTCTCCAAGCTCCAACTAC TCACTAAGCACAGGGGGTCCTTGCACCTTGGGCCCCAACCCAGCCCTGAGACACCTAGTT ACCAAAAATCTTTCTAAAAATAAAATTAAAGACAATTGATTCACACTTCAGCACATACCC TTTAACTGTCCCATCGACTTTTCTTGCGCTTGGGCGGCTCAGGGACAGCAAACCCATCAG CTGTCTTATCTGTCTTGCTGTCTGTCTTATCCGCCTTGGTGCTGTCTGCTTTGGGGTCCA TCTTGCTCTCACGATTACAACTTTCTTTCCTGCTTTCACCATTCCGACCATCGCTTGCGC CTCGGCTCTCCCCGTGGCGGCCTCCACCTCCTCCGTGCCTGTTCTCTCCATGAGGGTGGC CATCAGTGTGACGCCGGCCATCGGCATGACGGCTGCTGCTTTCTGGGTAGCGGTATCCAT CTCCATGGCGACCACCATCTCCATGACGCGGGCTCTCACCGTGCCGATTGCCACTCTCTC CATGACTATGTCGGCTGCCACCCCGGTTCTCAGTATATCGCTCTCTCTTCCCATTGCCAC CCCCAGTCCCTTCTCGGCTGTTATTCCCTGGAGCTGTGTTGTTGACTCCCTGGGCTCCGG CAGAAGGGTAGGTCACTGGGGCGCTGCTGAGGTTGCCAGCACTGCCAAAGGCTGGGACGC CCTTGGTGGCACCGGCAATAGGGCTGTCAGGACTGTTATGACCCTGTTGGGCTGAATTAG TTGGAACTGAATTCAAGCTCCCTGCACTAGTCCATCCACTTGCTCCAGCAGCAGAGCTTC CAGCCTTCTGGTTGCTTAAGCTGGCAGCGACAAAGTGACTCTTGTACTGTGACTGGAAAG CTGCTTTCATTGCTGTCAGCCGATCTCCCATGGCTCCTGTGGAGGGCTTGTAGGCCTCAT AATTGCTCATTACATTGTTATTATTTCCTCGGTCCGAGTTCTCAGAGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCTGTGGTTCTCAAAGGATGGCTTCAGCGGGATCGAGGATGATGCTGACGAGGCCCTGG AGATCAGCCAGGCACAGCTGTTGTACGAGAGCCGTCGCAAGGGGCAGCAGCCACTGCCAG CACCTTCCAGCGTGAAGACTGAGAGAAAACCACCCCCATGCCAGGGTGAGGCCCCTGAAG GGGCAGGGGCTCCTTCAGGGACAGAGGCTGCCACAGGCCCTGGCGGGGAAGCCAGAGATA GCAGCTCTGACAGCGACAGCAGCAGCAGTGAGGATGAAGACACTTGGAAACCACGCAGTC AGAAGCGAAGACGGGGGCCTGAGGCAGGGGATGACGACGGGTTTGAGATCGTGCCCATTG AGGACCCAGCGAGACATCGGATACTGGACCCTGAAGGCCTGGCTCTAGGCGCCATTATTG CCTCTTCCAAAAAAGCCAAGAGAGACCTCATAGATGACTCCTTCAGCCGGTACACATTTA ATGAGGATGAGGGGGAGCTTCCAGAGTGGTTTGTGCAGGAGGAGAAGCAGCACAGGATAC GACAGCTGCCTCTTGATAAGAAGGAGGTGGAGTATTACAGGAAACGCTGGCGGGAAATCA ACGCCCGTCCCATCAAGAAAGTGGCTGAGGCTAAGGCCAGAAAGAAACGGAGGATGCTGA AGAAGCTGGAGCAGACCAAGAAGAAGGCAGAAGCTGTGGTCAACACGGTGGACATCTCAG AGCGGGAGAAAGTGGCACAGCTTCGAAGTCTCTACAAGAAGGCGGGGCTTGGAAAGGAGA AACGCCAGGTCACCTATGTCGTAGCCAAAAAAGGTGTGGGCCGCAAAGTACGCCGACCAG CTGGAGTCAGAGGTCACTTCAAGGTGGTGGACTCGAGGATGAAGAAAGACCAAAGAGCAC AGCAACGGAAGGAGCAGAAGAAAAAGCACAAGCGCAAGTGAGCAGAGCTGCAGGACTTCC AGCAGGACTGTGTAAGGACGAGGCCTTCCGCCTCCTCAGTACCATCCCGTCCCTTGTTGC CAGCATCACAGTGTGAAAAGACAGGTGCCGGGCACTTGGGGGTGGTCCTGTGCTGTGAGG GGGACGTCTTCCTGGCTGGAAGAAGGGCTCCTGTTAACATGCCACTGAAATGTCCTGTTG GCACCATCCCAGACCCCACAACCGTTGTGGGGTAAGAAAATCACACCCTTTTTAAATCCT AAGCGGGGGAGTTCAGTGTTGGGATGGCACGTGCTGTAGTCTGCTCCTGGGCAGGTGGGC ATCATCTGAATAAAATCAGGATGATCAGTGCGTGGTAACTGTTGACACCACGTGCTGCAC TGTTCCAGATCACAGTTAATACGTACCGACTCGTGGTGAAGTAAATGACAAACAATCCAC AGGTCCCAGTAGTAAACCATTTACTAGAGCAAGCAGAAAGGAATGCACATCTTAAAGAAA CCTTCACAAAGTCACAAAATTTGAAGTACGTATATTTTTCCTTTTATAAACAAGATAGAA CAAAAATCATCAAAATCATTTCAGCAAAAGATTCTTCTACCATTGTGGCAAGTTAAAAAA AATACAGTGAAATAGGAGAAGACACTTTAAAAGCTGTTGTTGGATTTTTGCTTAATTTTC CATTTAGCAACATTTCAGGCCCAGCGCGGCTCTGGGTCTGGCAGGCTGCTGCTTCCTGTC TCAGGGCTGGGGAACCTGAGCATCACTTTTCCCTCAGAATCAGACATCTCCCTTCCCTGC AAATGTTTGGATGCACCAAAGTGCTTCCCACACATCCCTAACACCTCTGTGGATTGGGTT CGTAGGAGCAGCCAACTCCTGCAAAGGGGTCTGCCTGGCCACAGAAAAAGAACTTTATTT GTAGATGTTTTTAAGGTGACATTTTAGTAAAAAATATGCACTACATAGAATATAAACCTA GAATGAGTTTTGTGCCTTATAAGGCCCTTTCTTCCAAGGTTTCCTCAACTGACCCTCATG ACAACTCACCCAGAGCCAAAAGAAGCTTCTCAGGTCTCACTTCTAAGGACCAAAGCAGCT TCCCAAAAACATCTGAAAAATGACCCAGAAGAGGGGGTAATGTCTCCAAGCTCCAACTAC TCACTAAGCACAGGGGGTCCTTGCACCTTGGGCCCCAACCCAGCCCTGAGACACCTAGTT ACCAAAAATCTTTCTAAAAATAAAATTAAAGACAATTGATTCACACTTCAGCACATACCC TTTAACTGTCCCATCGACTTTTCTTGCGCTTGGGCGGCTCAGGGACAGCAAACCCATCAG CTGTCTTATCTGTCTTGCTGTCTGTCTTATCCGCCTTGGTGCTGTCTGCTTTGGGGTCCA TCTTGCTCTCACGATTACAACTTTCTTTCCTGCTTTCACCATTCCGACCATCGCTTGCGC CTCGGCTCTCCCCGTGGCGGCCTCCACCTCCTCCGTGCCTGTTCTCTCCATGAGGGTGGC CATCAGTGTGACGCCGGCCATCGGCATGACGGCTGCTGCTTTCTGGGTAGCGGTATCCAT CTCCATGGCGACCACCATCTCCATGACGCGGGCTCTCACCGTGCCGATTGCCACTCTCTC CATGACTATGTCGGCTGCCACCCCGGTTCTCAGTATATCGCTCTCTCTTCCCATTGCCAC CCCCAGTCCCTTCTCGGCTGTTATTCCCTGGAGCTGTGTTGTTGACTCCCTGGGCTCCGG CAGAAGGGTAGGTCACTGGGGCGCTGCTGAGGTTGCCAGCACTGCCAAAGGCTGGGACGC CCTTGGTGGCACCGGCAATAGGGCTGTCAGGACTGTTATGACCCTGTTGGGCTGAATTAG TTGGAACTGAATTCAAGCTCCCTGCACTAGTCCATCCACTTGCTCCAGCAGCAGAGCTTC CAGCCTTCTGGTTGCTTAAGCTGGCAGCGACAAAGTGACTCTTGTACTGTGACTGGAAAG CTGCTTTCATTGCTGTCAGCCGATCTCCCATGGCTCCTGTGGAGGGCTTGTAGGCCTCAT AATTGCTCATTACATTGTTATTATTTCCTCGGTCCGAGTTCTCAGAGC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 96-277, - strand, RNAz p=0.999914 | |
| 1914-2226, - strand, RNAz p=0.997766 | |
| 2717-2836, + strand, RNAz p=0.717383 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 96-277, - strand, RNAz p=0.999914 | |
| 1914-2226, - strand, RNAz p=0.997766 | |
| 2717-2836, + strand, RNAz p=0.717383 |
| Aligned organism(s): 29 entry(ies) | More info |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
| 16-277, gnl|bosTau2|chr19 (40495243-40494979) | |
| 16-277, gnl|Hg17|chr17 (59252737-59252449) | |
| 16-277, gnl|Mm7|chr11 (106359879-106359606) | |
| 469-656, gnl|bosTau2|chr19 (40494376-40494189) | |
| 469-656, gnl|canFam2|chr9 (14901198-14901363) | |
| 469-656, gnl|danRer3|chr2 (11359679-11359844) | |
| 469-656, gnl|dasNov1|scaffold_21495 (13793-13945) | |
| 469-656, gnl|echTel1|scaffold_313474 (61861-61696) | |
| 469-656, gnl|fr1|chrUn (100436695-100436860) | |
| 469-656, gnl|hg17|chr17 (59251343-59251508) | |
| 469-656, gnl|Hg17|chr17 (59251531-59251344) | |
| 469-656, gnl|loxAfr1|scaffold_4277 (60346-60181) | |
| 469-656, gnl|mm7|chr11 (106358910-106359075) | |
| 469-656, gnl|Mm7|chr11 (106359098-106358911) | |
| 469-656, gnl|monDom2|scaffold_18 (35686497-35686332) | |
| 469-656, gnl|oryCun1|scaffold_32453 (38-201) | |
| 469-656, gnl|panTro1|chr19 (45885026-45884861) | |
| 469-656, gnl|rheMac2|chr16 (59334082-59334247) | |
| 469-656, gnl|rn3|chr10 (95659299-95659464) | |
| 469-656, gnl|tetNig1|chr1 (11959310-11959145) | |
| 469-656, gnl|xenTro1|scaffold_1203 (94225-94390) | |
| 747-1169, gnl|bosTau2|chr19 (40493927-40493493) | |
| 747-1169, gnl|Hg17|chr17 (59251088-59250652) | |
| 1300-1654, gnl|bosTau2|chr19 (40493295-40492937) | |
| 1300-1654, gnl|Hg17|chr17 (59250487-59250135) | |
| 1300-1654, gnl|Mm7|chr11 (106358140-106357788) | |
| 1685-2934, gnl|bosTau2|chr19 (40492850-40491593) | |
| 1685-2934, gnl|Hg17|chr17 (59250024-59248784) | |
| 1685-2934, gnl|Mm7|chr11 (106357686-106356531) |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 16-277, gnl|bosTau2|chr19 (40495243-40494979) | |
| 16-277, gnl|Hg17|chr17 (59252737-59252449) | |
| 16-277, gnl|Mm7|chr11 (106359879-106359606) | |
| 469-656, gnl|bosTau2|chr19 (40494376-40494189) | |
| 469-656, gnl|canFam2|chr9 (14901198-14901363) | |
| 469-656, gnl|danRer3|chr2 (11359679-11359844) | |
| 469-656, gnl|dasNov1|scaffold_21495 (13793-13945) | |
| 469-656, gnl|echTel1|scaffold_313474 (61861-61696) | |
| 469-656, gnl|fr1|chrUn (100436695-100436860) | |
| 469-656, gnl|hg17|chr17 (59251343-59251508) | |
| 469-656, gnl|Hg17|chr17 (59251531-59251344) | |
| 469-656, gnl|loxAfr1|scaffold_4277 (60346-60181) | |
| 469-656, gnl|mm7|chr11 (106358910-106359075) | |
| 469-656, gnl|Mm7|chr11 (106359098-106358911) | |
| 469-656, gnl|monDom2|scaffold_18 (35686497-35686332) | |
| 469-656, gnl|oryCun1|scaffold_32453 (38-201) | |
| 469-656, gnl|panTro1|chr19 (45885026-45884861) | |
| 469-656, gnl|rheMac2|chr16 (59334082-59334247) | |
| 469-656, gnl|rn3|chr10 (95659299-95659464) | |
| 469-656, gnl|tetNig1|chr1 (11959310-11959145) | |
| 469-656, gnl|xenTro1|scaffold_1203 (94225-94390) | |
| 747-1169, gnl|bosTau2|chr19 (40493927-40493493) | |
| 747-1169, gnl|Hg17|chr17 (59251088-59250652) | |
| 1300-1654, gnl|bosTau2|chr19 (40493295-40492937) | |
| 1300-1654, gnl|Hg17|chr17 (59250487-59250135) | |
| 1300-1654, gnl|Mm7|chr11 (106358140-106357788) | |
| 1685-2934, gnl|bosTau2|chr19 (40492850-40491593) | |
| 1685-2934, gnl|Hg17|chr17 (59250024-59248784) | |
| 1685-2934, gnl|Mm7|chr11 (106357686-106356531) |
| Expressed library(ies): 23 entry(ies) | More info |
| Expressed library(ies): 23 entry(ies) | Help | Less info |
| gul (0.355177) | |
| fty (0.351679) | |
| fbs (0.350693) | |
| cki (0.330469) | |
| che (0.272628) | |
| cbe (0.239234) | |
| eje (0.197668) | |
| col (0.195008) | |
| mcp (0.170648) | |
| fco (0.157208) | |
| fat (0.147427) | |
| lin (0.145603) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| nmm (0.132802) | |
| thg (0.126791) | |
| eep (0.122564) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| med (0.116252) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| nbm (0.0993246) |
| Expressed library(ies): 23 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| gul (0.355177) | |
| fty (0.351679) | |
| fbs (0.350693) | |
| cki (0.330469) | |
| che (0.272628) | |
| cbe (0.239234) | |
| eje (0.197668) | |
| col (0.195008) | |
| mcp (0.170648) | |
| fco (0.157208) | |
| fat (0.147427) | |
| lin (0.145603) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| nmm (0.132802) | |
| thg (0.126791) | |
| eep (0.122564) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| med (0.116252) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| nbm (0.0993246) |