Ss1.1-Pig4-TMW8030O18.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACTTCCTTACTCTAAGGCGCGGTGCAGGGCAGGTGGTCCGGCCAAATGGACGGTTGAGGC GGGAGCGGAGCAGCTTCGGAGACTTTCTTTAAGGCGGCAAGGCTGCGGAGGGCGCGGGGT GGAGGCCCACGGCGCTATGGCTCACGTCGGCTCTCGCAAGCGCTCGAGGAGTCGCAGCCG GTCCCGGGGCAGAGGGTCGGAAAAGAAAAGGAAGAAGAGCAGTAAGGACGCTCCCAGGAG CTGCTCGGCTTCTAGATCCCAAAGCCGCAAAGCCAGCACTACCTCCTCTGGGGCGGAGGA GAGAAGCAAGCACAAGGCCCGGAGGAGACCACGATCCAGCTCTTCCTCCTCTTCTTCCAG TTCTTCTAGCTCCTCTTCCTCCTCGTCCTCCTCCTCTTCCTCCAGCGATGGCCGGAAGAA GCGGGGGAAGCACAAGGACAAGAAGAGGAAGAAGAAGAAGAAAAGGAAGAAGAAGCTGAA GAAGAGAAGCAAGGAAAAGGCCAAGGTGCAGCAAGCTGAGGCTCTGCCTGGACCTTCGCT GGACCAGTGGCACAGAGCAGCCGAGGAGGAAGAGGATGGCCCAGTCCTGACAGATGAGCA GAAGTCCCGCATCCAGGCCATGAAGCCCATGACCAAGGAAGAGTGGGATGCCCGGCAGAG CGTCATCCGCAAGGTGGTTGACCCAGAGACAGGACGCACCAGGCTCATTAAGGGAGATGG TGAGGTCTTAGAGGAGATCGTAACCAAGGAACGACACCGAGAGATCAACAAGCAAGCCAC CCGAGGGGATGGTCTGGCCTTCCAGATGCGGGCAGGGCTGCTGCCCTGAGGGCCCCCCCG CCAGAGTCTTCGGACAGTGTTGGTAGCATGGCCTGGAGGCTGGCCTCAGGGAGGGCAGCA GGAGCTCAATGGGTGCTATTTGCCTTTCACCTGCAGACCGACCTCTGGCCCAGCCTCCTC TCAGATGCAGGGGGTGGAGGGCAGAGTCACTGGCCTAGTCAGCTCTCCCATCTTCCCAAA GAGCGCAACTTCCCAGATATTAAACGTTCCCTGGTTGGAGAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACTTCCTTACTCTAAGGCGCGGTGCAGGGCAGGTGGTCCGGCCAAATGGACGGTTGAGGC GGGAGCGGAGCAGCTTCGGAGACTTTCTTTAAGGCGGCAAGGCTGCGGAGGGCGCGGGGT GGAGGCCCACGGCGCTATGGCTCACGTCGGCTCTCGCAAGCGCTCGAGGAGTCGCAGCCG GTCCCGGGGCAGAGGGTCGGAAAAGAAAAGGAAGAAGAGCAGTAAGGACGCTCCCAGGAG CTGCTCGGCTTCTAGATCCCAAAGCCGCAAAGCCAGCACTACCTCCTCTGGGGCGGAGGA GAGAAGCAAGCACAAGGCCCGGAGGAGACCACGATCCAGCTCTTCCTCCTCTTCTTCCAG TTCTTCTAGCTCCTCTTCCTCCTCGTCCTCCTCCTCTTCCTCCAGCGATGGCCGGAAGAA GCGGGGGAAGCACAAGGACAAGAAGAGGAAGAAGAAGAAGAAAAGGAAGAAGAAGCTGAA GAAGAGAAGCAAGGAAAAGGCCAAGGTGCAGCAAGCTGAGGCTCTGCCTGGACCTTCGCT GGACCAGTGGCACAGAGCAGCCGAGGAGGAAGAGGATGGCCCAGTCCTGACAGATGAGCA GAAGTCCCGCATCCAGGCCATGAAGCCCATGACCAAGGAAGAGTGGGATGCCCGGCAGAG CGTCATCCGCAAGGTGGTTGACCCAGAGACAGGACGCACCAGGCTCATTAAGGGAGATGG TGAGGTCTTAGAGGAGATCGTAACCAAGGAACGACACCGAGAGATCAACAAGCAAGCCAC CCGAGGGGATGGTCTGGCCTTCCAGATGCGGGCAGGGCTGCTGCCCTGAGGGCCCCCCCG CCAGAGTCTTCGGACAGTGTTGGTAGCATGGCCTGGAGGCTGGCCTCAGGGAGGGCAGCA GGAGCTCAATGGGTGCTATTTGCCTTTCACCTGCAGACCGACCTCTGGCCCAGCCTCCTC TCAGATGCAGGGGGTGGAGGGCAGAGTCACTGGCCTAGTCAGCTCTCCCATCTTCCCAAA GAGCGCAACTTCCCAGATATTAAACGTTCCCTGGTTGGAGAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 338-454, - strand, RNAz p=0.987972 | |
| 810-921, + strand, RNAz p=0.910315 | |
| 942-1046, - strand, RNAz p=0.576023 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 338-454, - strand, RNAz p=0.987972 | |
| 810-921, + strand, RNAz p=0.910315 | |
| 942-1046, - strand, RNAz p=0.576023 |
| Homologous human UTR: 2 entry(ies) | More info |
| Homologous human UTR: 2 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of AB040953, - | |
| 3' of BC015569, + |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 2-125, gnl|bosTau2|chr17 (27449871-27449992) | |
| 2-125, gnl|canFam2|chr26 (9541668-9541499) | |
| 2-125, gnl|echTel1|scaffold_317027 (162242-162415) | |
| 2-125, gnl|fr1|chrUn (258788482-258788416) | |
| 2-125, gnl|hg17|chr12 (121990042-121990204) | |
| 2-125, gnl|Hg17|chr12 (121990121-121990239) | |
| 2-125, gnl|loxAfr1|scaffold_106418 (1017-1196) | |
| 2-125, gnl|mm7|chr5 (123361868-123362021) | |
| 2-125, gnl|monDom2|scaffold_97 (3406264-3406439) | |
| 2-125, gnl|oryCun1|scaffold_195345 (14416-14552) | |
| 2-125, gnl|rn3|chr12 (33469428-33469276) | |
| 299-584, gnl|bosTau2|chr17 (27450956-27451244) | |
| 299-584, gnl|Hg17|chr12 (121991021-121991306) | |
| 299-584, gnl|Mm7|chr5 (123362759-123363038) | |
| 771-1061, gnl|bosTau2|chr17 (27451994-27452287) | |
| 771-1061, gnl|canFam2|chr26 (9539620-9539414) | |
| 771-1061, gnl|dasNov1|scaffold_48751 (12379-12571) | |
| 771-1061, gnl|echTel1|scaffold_317027 (164195-164379) | |
| 771-1061, gnl|hg17|chr12 (121992019-121992245) | |
| 771-1061, gnl|Hg17|chr12 (121992045-121992335) | |
| 771-1061, gnl|loxAfr1|scaffold_70458 (345-115) | |
| 771-1061, gnl|mm7|chr5 (123363802-123363979) | |
| 771-1061, gnl|monDom2|scaffold_97 (3410375-3410631) | |
| 771-1061, gnl|oryCun1|scaffold_201194 (179910-180080) | |
| 771-1061, gnl|panTro1|chr10 (125072140-125072366) | |
| 771-1061, gnl|rheMac2|chr11 (124250768-124250994) | |
| 771-1061, gnl|rn3|chr12 (33467419-33467240) | |
| 771-1061, gnl|xenTro1|scaffold_100 (1849964-1850155) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-125, gnl|bosTau2|chr17 (27449871-27449992) | |
| 2-125, gnl|canFam2|chr26 (9541668-9541499) | |
| 2-125, gnl|echTel1|scaffold_317027 (162242-162415) | |
| 2-125, gnl|fr1|chrUn (258788482-258788416) | |
| 2-125, gnl|hg17|chr12 (121990042-121990204) | |
| 2-125, gnl|Hg17|chr12 (121990121-121990239) | |
| 2-125, gnl|loxAfr1|scaffold_106418 (1017-1196) | |
| 2-125, gnl|mm7|chr5 (123361868-123362021) | |
| 2-125, gnl|monDom2|scaffold_97 (3406264-3406439) | |
| 2-125, gnl|oryCun1|scaffold_195345 (14416-14552) | |
| 2-125, gnl|rn3|chr12 (33469428-33469276) | |
| 299-584, gnl|bosTau2|chr17 (27450956-27451244) | |
| 299-584, gnl|Hg17|chr12 (121991021-121991306) | |
| 299-584, gnl|Mm7|chr5 (123362759-123363038) | |
| 771-1061, gnl|bosTau2|chr17 (27451994-27452287) | |
| 771-1061, gnl|canFam2|chr26 (9539620-9539414) | |
| 771-1061, gnl|dasNov1|scaffold_48751 (12379-12571) | |
| 771-1061, gnl|echTel1|scaffold_317027 (164195-164379) | |
| 771-1061, gnl|hg17|chr12 (121992019-121992245) | |
| 771-1061, gnl|Hg17|chr12 (121992045-121992335) | |
| 771-1061, gnl|loxAfr1|scaffold_70458 (345-115) | |
| 771-1061, gnl|mm7|chr5 (123363802-123363979) | |
| 771-1061, gnl|monDom2|scaffold_97 (3410375-3410631) | |
| 771-1061, gnl|oryCun1|scaffold_201194 (179910-180080) | |
| 771-1061, gnl|panTro1|chr10 (125072140-125072366) | |
| 771-1061, gnl|rheMac2|chr11 (124250768-124250994) | |
| 771-1061, gnl|rn3|chr12 (33467419-33467240) | |
| 771-1061, gnl|xenTro1|scaffold_100 (1849964-1850155) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| mas (0.210305) | |
| eje (0.197668) | |
| fty (0.17584) | |
| ill (0.175593) | |
| nje (0.16592) | |
| cag (0.151194) | |
| hlv (0.139256) | |
| cov (0.132153) | |
| ese (0.126502) | |
| med (0.116252) | |
| jej (0.0989218) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mas (0.210305) | |
| eje (0.197668) | |
| fty (0.17584) | |
| ill (0.175593) | |
| nje (0.16592) | |
| cag (0.151194) | |
| hlv (0.139256) | |
| cov (0.132153) | |
| ese (0.126502) | |
| med (0.116252) | |
| jej (0.0989218) |